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PMC:7473770 / 21347-23350 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T142 104-112 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T143 143-156 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T144 143-148 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T145 243-246 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T146 310-316 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T147 511-517 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T148 808-819 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T149 834-838 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T150 839-845 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T151 922-928 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T152 967-970 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T153 1020-1033 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T154 1020-1025 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T155 1125-1129 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T156 1350-1360 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T157 1398-1409 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T158 1653-1657 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T159 1658-1664 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T130 104-118 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T131 143-156 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T132 143-148 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T133 149-156 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T134 310-316 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T135 511-517 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T136 834-838 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T137 839-845 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T138 922-928 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T139 967-970 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T140 1020-1033 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T141 1020-1025 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T142 1026-1033 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T143 1125-1129 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T144 1653-1657 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T145 1658-1664 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 1624-1636 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T52 1860-1872 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T191 47-48 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 143-156 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T193 143-156 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T194 820-822 http://purl.obolibrary.org/obo/CLO_0052906 denotes cl
T195 834-838 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T196 834-838 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T197 967-970 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T198 985-986 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 1020-1033 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T200 1020-1033 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T201 1052-1061 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T202 1070-1071 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 1125-1129 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T204 1146-1147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T205 1468-1470 http://purl.obolibrary.org/obo/CL_0000453 denotes Lc
T206 1653-1657 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T207 1653-1657 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T208 1699-1702 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T209 1769-1770 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T210 1902-1911 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T21 1624-1636 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T22 1860-1872 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T23 1881-1890 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T155 0-83 Sentence denotes The distribution of the distances obtained for a given slice is shown in Figure 6e.
T156 84-269 Sentence denotes The swelling of the alveolar walls as well as the inflamed blood vessels can be identified by comparing the reconstructed electron density and the 3D-distance map (see Figure 6f and g).
T157 270-408 Sentence denotes Figure 6h shows the distribution of the tissue-air distances (histogram) for all samples, following the workflow illustrated in Figure 6e.
T158 409-462 Sentence denotes The binning of distances was set to one voxel length.
T159 463-576 Sentence denotes The figure underlines the high diversity of the tissue structure which could already be seen in the 3D histology.
T160 577-684 Sentence denotes Further, it directly informs about the specific surface SV, which is given by the first point of the graph.
T161 685-767 Sentence denotes The corresponding parameters and metrics are tabulated in Table 1 for all samples.
T162 768-872 Sentence denotes Additionally, the mean concentration of lymphocytes cl within the lung tissue is listed for all samples.
T163 873-971 Sentence denotes The values quantify the general structure of the tissue which is qualitatively discernible by eye.
T164 972-1101 Sentence denotes Samples with a high amount of swollen, inflamed blood vessels and thick hyaline membranes exhibit a larger characteristic length.
T165 1102-1239 Sentence denotes Note, that the control lung was prepared in a hydrated environment and shrinking due to further preparation of the sample does not occur.
T166 1240-1320 Sentence denotes Hence, the results cannot be directly compared to the paraffin embedded samples.
T167 1321-1449 Sentence denotes Further, the analysis of the lymphocyte concentration was performed since no lymphocytes were found in the reconstructed volume.
T168 1450-1563 Sentence denotes The low values of Lc and dO2¯ for sample II correlate with the lack of ground-glass opacification in clinical CT.
T169 1564-1682 Sentence denotes Based on the extracted structural parameters, the degree of inflammation and swelling of lung tissue can be evaluated.
T170 1683-1803 Sentence denotes E.g. patient II has the highest surface area volume-ratios while sample I and VI have a relatively low specific surface.
T171 1804-2003 Sentence denotes Larger characteristic lengths may also be indicative of inflammation and the formation of hyaline membranes, which will be evaluated in the following based on ROI and high-resolution reconstructions.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
220 1688-1695 Species denotes patient Tax:9606
221 1294-1302 Chemical denotes paraffin MESH:D010232
222 88-96 Disease denotes swelling MESH:D004487
223 1624-1636 Disease denotes inflammation MESH:D007249
224 1641-1649 Disease denotes swelling MESH:D004487
225 1860-1872 Disease denotes inflammation MESH:D007249