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PMC:7473770 / 17894-18784 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T111 48-56 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T112 57-67 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T113 73-84 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T114 145-149 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T115 155-167 Body_part denotes interstitium http://purl.org/sig/ont/fma/fma86301
T116 175-183 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T117 294-310 Body_part denotes bronchial mucosa http://purl.org/sig/ont/fma/fma62652
T118 304-310 Body_part denotes mucosa http://purl.org/sig/ont/fma/fma85355
T119 336-347 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T120 396-409 Body_part denotes bronchiolitis http://purl.org/sig/ont/fma/fma76497
T121 562-568 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T122 610-621 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T123 714-720 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T124 802-808 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T125 841-852 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T102 57-67 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T103 145-149 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T104 294-310 Body_part denotes bronchial mucosa http://purl.obolibrary.org/obo/UBERON_0000410
T105 304-310 Body_part denotes mucosa http://purl.obolibrary.org/obo/UBERON_0000344
T106 562-568 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T107 714-720 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T108 802-808 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 73-109 Disease denotes lymphocytic interstitial pneumonitis http://purl.obolibrary.org/obo/MONDO_0009537
T42 98-109 Disease denotes pneumonitis http://purl.obolibrary.org/obo/MONDO_0043905
T43 125-133 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T44 250-259 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T45 264-275 Disease denotes anthracosis http://purl.obolibrary.org/obo/MONDO_0006654
T46 348-360 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T47 377-395 Disease denotes chronic bronchitis http://purl.obolibrary.org/obo/MONDO_0005607
T48 385-395 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T49 396-409 Disease denotes bronchiolitis http://purl.obolibrary.org/obo/MONDO_0002465
T50 828-836 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T160 114-115 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 137-138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 145-149 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T163 145-149 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T164 155-167 http://purl.obolibrary.org/obo/UBERON_0005169 denotes interstitium
T165 304-310 http://purl.obolibrary.org/obo/UBERON_0000344 denotes mucosa
T166 396-409 http://purl.obolibrary.org/obo/UBERON_0002186 denotes bronchiolitis
T167 826-827 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T16 214-224 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T17 348-360 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T125 0-150 Sentence denotes Histomorphological analysis shows peribronchial alveolar parenchyma with lymphocytic interstitial pneumonitis and a singular thrombus in a small vein.
T126 151-225 Sentence denotes The interstitium of the alveolar septae is widened by myogenic metaplasia.
T127 226-289 Sentence denotes Adjacent, centrilobular emphysema and anthracosis are observed.
T128 290-440 Sentence denotes The bronchial mucosa shows varying degrees of lymphocytic inflammation in the sense of chronic bronchitis/bronchiolitis (original magnification 100×).
T129 441-595 Sentence denotes From PC-CT reconstructions, the sample consists of thin alveoli (Figure 3VI, upper left) evolving into compact, fibrotic tissue (Figure 3VI, lower right).
T130 596-651 Sentence denotes The amount of lymphocytes is rather low in this sample.
T131 652-727 Sentence denotes Black granules and some thrombi are embedded within the bulky tissue parts.
T132 728-890 Sentence denotes The biopsy punch covers the region of transition from alveoli to fibrotic tissue, containing also a thrombus and capillaries as identified from the zoom tomogram.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T25 88-112 Phenotype denotes erstitial pneumonitis an http://purl.obolibrary.org/obo/HP_0006515
T26 239-262 Phenotype denotes trilobular emphysema an http://purl.obolibrary.org/obo/HP_0032966
T27 380-398 Phenotype denotes onic bronchitis/br http://purl.obolibrary.org/obo/HP_0004469
T28 399-412 Phenotype denotes nchiolitis (o http://purl.obolibrary.org/obo/HP_0011950

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
199 73-109 Disease denotes lymphocytic interstitial pneumonitis MESH:D017563
200 125-133 Disease denotes thrombus MESH:D013927
201 250-259 Disease denotes emphysema MESH:D004646
202 336-360 Disease denotes lymphocytic inflammation MESH:D007249
203 385-409 Disease denotes bronchitis/bronchiolitis MESH:D001991
204 828-836 Disease denotes thrombus MESH:D013927
205 446-451 CellLine denotes PC-CT CVCL:B848