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PMC:7473770 / 16762-17882 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T91 76-84 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T92 85-95 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T93 112-123 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T94 201-209 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T95 217-229 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T96 263-272 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T97 332-357 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T98 352-357 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T99 419-439 Body_part denotes alveolar macrophages http://purl.org/sig/ont/fma/fma83023
T100 480-492 Body_part denotes neutrophilic http://purl.org/sig/ont/fma/fma62860
T101 493-505 Body_part denotes granulocytes http://purl.org/sig/ont/fma/fma62854
T102 757-768 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T103 863-874 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T104 878-890 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T105 922-935 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T106 922-927 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T107 1027-1031 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T108 1041-1052 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T109 1056-1061 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T110 1065-1077 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T93 85-95 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T94 201-215 Body_part denotes alveolar walls http://purl.obolibrary.org/obo/UBERON_0004894
T95 263-272 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T96 878-890 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T97 878-883 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T98 884-890 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T99 922-935 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T100 922-927 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T101 928-935 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 112-146 Disease denotes lymphocytic interstitial pneumonia http://purl.obolibrary.org/obo/MONDO_0009537
T38 137-146 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T39 531-547 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T40 696-708 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T146 171-180 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T147 341-351 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T148 352-357 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T149 522-523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 729-738 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T151 850-858 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T152 876-877 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T153 878-890 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T154 878-890 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T155 922-935 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T156 922-935 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T157 1027-1037 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T158 1054-1061 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T159 1065-1077 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T15 696-708 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T117 0-304 Sentence denotes By conventional histological assessment, Sample V consists of peribronchial alveolar parenchyma showing massive lymphocytic interstitial pneumonia with ubiquitous hyaline membranes superimposed on the alveolar walls, neutrophilic capillaritis and multifocal post-capillary thrombi in terms of severe DAD.
T118 305-440 Sentence denotes Furthermore, bronchialized alveolar epithelial cells show cytopathic changes and multifocal desquamation, as does alveolar macrophages.
T119 441-594 Sentence denotes Focally, accumulation of intraalveolar neutrophilic granulocytes in the sense of a florid bronchopneumonia can be observed (original magnification 100×).
T120 595-769 Sentence denotes PC-CT data give rise to alterations of the overall morphology due to Covid-19, including substantial inflammation, pronounced hyaline membranes, and high load of lymphocytes.
T121 770-875 Sentence denotes The biopsy punch was chosen to include areas with increased presence of hyaline membrane and lymphocytes.
T122 876-1004 Sentence denotes A blood vessel splitting into several smaller blood vessels is easily recognized when browsing through the reconstructed volume.
T123 1005-1120 Sentence denotes Noteworthy, different cell types as macrophages, T-cells or erythrocytes can be distinguished in the zoom tomogram.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T23 140-149 Phenotype denotes umonia wi http://purl.obolibrary.org/obo/HP_0002090
T24 400-412 Phenotype denotes quamation, a http://purl.obolibrary.org/obo/HP_0040189

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
186 112-146 Disease denotes lymphocytic interstitial pneumonia MESH:D009395
187 217-242 Disease denotes neutrophilic capillaritis MESH:C564275
188 531-547 Disease denotes bronchopneumonia MESH:D001996
189 664-672 Disease denotes Covid-19 MESH:C000657245
190 696-708 Disease denotes inflammation MESH:D007249
191 595-600 CellLine denotes PC-CT CVCL:B848