PMC:7473770 / 16032-16751 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T83","span":{"begin":58,"end":66},"obj":"Body_part"},{"id":"T84","span":{"begin":67,"end":77},"obj":"Body_part"},{"id":"T85","span":{"begin":90,"end":101},"obj":"Body_part"},{"id":"T86","span":{"begin":378,"end":390},"obj":"Body_part"},{"id":"T87","span":{"begin":506,"end":518},"obj":"Body_part"},{"id":"T88","span":{"begin":572,"end":578},"obj":"Body_part"},{"id":"T89","span":{"begin":630,"end":636},"obj":"Body_part"},{"id":"T90","span":{"begin":691,"end":696},"obj":"Body_part"}],"attributes":[{"id":"A83","pred":"fma_id","subj":"T83","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma45732"},{"id":"A85","pred":"fma_id","subj":"T85","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A86","pred":"fma_id","subj":"T86","obj":"http://purl.org/sig/ont/fma/fma63183"},{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma63183"},{"id":"A88","pred":"fma_id","subj":"T88","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A89","pred":"fma_id","subj":"T89","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T83","span":{"begin":67,"end":77},"obj":"Body_part"},{"id":"T84","span":{"begin":378,"end":390},"obj":"Body_part"},{"id":"T85","span":{"begin":378,"end":383},"obj":"Body_part"},{"id":"T86","span":{"begin":384,"end":390},"obj":"Body_part"},{"id":"T87","span":{"begin":506,"end":518},"obj":"Body_part"},{"id":"T88","span":{"begin":506,"end":511},"obj":"Body_part"},{"id":"T89","span":{"begin":512,"end":518},"obj":"Body_part"},{"id":"T90","span":{"begin":572,"end":578},"obj":"Body_part"},{"id":"T91","span":{"begin":630,"end":636},"obj":"Body_part"},{"id":"T92","span":{"begin":707,"end":713},"obj":"Body_part"}],"attributes":[{"id":"A83","pred":"uberon_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/UBERON_0000353"},{"id":"A84","pred":"uberon_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/UBERON_0001981"},{"id":"A85","pred":"uberon_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A86","pred":"uberon_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"A87","pred":"uberon_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/UBERON_0001981"},{"id":"A88","pred":"uberon_id","subj":"T88","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A89","pred":"uberon_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"A90","pred":"uberon_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A91","pred":"uberon_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A92","pred":"uberon_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/UBERON_0003037"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T33","span":{"begin":90,"end":124},"obj":"Disease"},{"id":"T34","span":{"begin":115,"end":124},"obj":"Disease"},{"id":"T35","span":{"begin":254,"end":263},"obj":"Disease"},{"id":"T36","span":{"begin":342,"end":351},"obj":"Disease"}],"attributes":[{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0009537"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0004849"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0004849"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T136","span":{"begin":233,"end":234},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T137","span":{"begin":305,"end":306},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T138","span":{"begin":364,"end":365},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T139","span":{"begin":378,"end":390},"obj":"http://purl.obolibrary.org/obo/UBERON_0001981"},{"id":"T140","span":{"begin":378,"end":390},"obj":"http://www.ebi.ac.uk/efo/EFO_0000817"},{"id":"T141","span":{"begin":506,"end":518},"obj":"http://purl.obolibrary.org/obo/UBERON_0001981"},{"id":"T142","span":{"begin":506,"end":518},"obj":"http://www.ebi.ac.uk/efo/EFO_0000817"},{"id":"T143","span":{"begin":668,"end":669},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T144","span":{"begin":691,"end":696},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T145","span":{"begin":705,"end":706},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-sentences","denotations":[{"id":"T108","span":{"begin":0,"end":9},"obj":"Sentence"},{"id":"T109","span":{"begin":10,"end":210},"obj":"Sentence"},{"id":"T110","span":{"begin":211,"end":294},"obj":"Sentence"},{"id":"T111","span":{"begin":295,"end":399},"obj":"Sentence"},{"id":"T112","span":{"begin":400,"end":454},"obj":"Sentence"},{"id":"T113","span":{"begin":455,"end":539},"obj":"Sentence"},{"id":"T114","span":{"begin":540,"end":603},"obj":"Sentence"},{"id":"T115","span":{"begin":604,"end":719},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T20","span":{"begin":118,"end":127},"obj":"Phenotype"},{"id":"T21","span":{"begin":243,"end":266},"obj":"Phenotype"},{"id":"T22","span":{"begin":345,"end":354},"obj":"Phenotype"}],"attributes":[{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0032966"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0002097"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}

{"project":"LitCovid-PubTator","denotations":[{"id":"175","span":{"begin":90,"end":124},"obj":"Disease"},{"id":"176","span":{"begin":126,"end":151},"obj":"Disease"},{"id":"177","span":{"begin":254,"end":263},"obj":"Disease"},{"id":"178","span":{"begin":330,"end":351},"obj":"Disease"},{"id":"179","span":{"begin":298,"end":303},"obj":"CellLine"}],"attributes":[{"id":"A175","pred":"tao:has_database_id","subj":"175","obj":"MESH:D009395"},{"id":"A177","pred":"tao:has_database_id","subj":"177","obj":"MESH:D004646"},{"id":"A178","pred":"tao:has_database_id","subj":"178","obj":"MESH:D004646"},{"id":"A179","pred":"tao:has_database_id","subj":"179","obj":"CVCL:B848"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Sample IV\nHistomorphological analysis shows peribronchial alveolar parenchyma with marked lymphocytic interstitial pneumonia, multifocal venous thrombi and focal intraalveolar fibrin deposition in terms of DAD. Furthermore, there is a mild centrilobular emphysema (original magnification 100×). In PC-CT, a network of thin septa, thrombi and emphysema, as well as a large empty blood vessel appears. Electron-rich diffuse black granules are also visible. The biopsy punch was selected to contain the empty blood vessel, some small thrombi. It also includes thin septa and tissue embedded dirt-particles. The zoom tomogram covered tissue with black granules as well as a band of inflammatory cells next to a septum wall."}