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PMC:7473770 / 14056-15074 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T50 64-72 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T51 73-83 Body_part denotes parenchyma http://purl.org/sig/ont/fma/fma45732
T52 193-204 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T53 258-273 Body_part denotes pulmonary veins http://purl.org/sig/ont/fma/fma70827
T54 354-363 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T55 364-377 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T56 364-369 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T57 403-419 Body_part denotes endothelial cell http://purl.org/sig/ont/fma/fma66772
T58 415-419 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 516-524 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T60 547-558 Body_part denotes lymphocytic http://purl.org/sig/ont/fma/fma62863
T61 630-636 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T62 649-661 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T63 863-875 Body_part denotes blood vessel http://purl.org/sig/ont/fma/fma63183
T64 936-953 Body_part denotes connective tissue http://purl.org/sig/ont/fma/fma9640
T65 964-978 Body_part denotes elastic fibers http://purl.org/sig/ont/fma/fma63868
T66 983-991 Body_part denotes collagen http://purl.org/sig/ont/fma/fma63891
T67 1011-1017 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T49 73-83 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T50 258-273 Body_part denotes pulmonary veins http://purl.obolibrary.org/obo/UBERON_0002016
T51 354-369 Body_part denotes capillary blood http://purl.obolibrary.org/obo/UBERON_0013757
T52 354-363 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T53 364-369 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T54 370-377 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T55 415-425 Body_part denotes cell layer http://purl.obolibrary.org/obo/UBERON_0000119
T56 630-636 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T57 714-721 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T58 863-875 Body_part denotes blood vessel http://purl.obolibrary.org/obo/UBERON_0001981
T59 863-868 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T60 869-875 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T61 936-953 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T62 947-953 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 193-227 Disease denotes lymphocytic interstitial pneumonia http://purl.obolibrary.org/obo/MONDO_0009537
T27 218-227 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 456-465 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T29 559-571 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T95 139-148 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T96 165-175 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T97 258-273 http://purl.obolibrary.org/obo/UBERON_0002016 denotes pulmonary veins
T98 284-285 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 364-377 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T100 364-377 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T101 403-419 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cell
T102 622-623 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 630-636 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T104 630-636 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T105 649-661 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T106 714-721 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T107 863-875 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessel
T108 863-875 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessel
T109 936-953 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T110 936-953 http://www.ebi.ac.uk/efo/EFO_0000952 denotes connective tissue
T111 983-991 http://purl.obolibrary.org/obo/CHEBI_3815 denotes collagen
T112 1011-1017 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T113 1011-1017 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T114 1011-1017 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T115 1011-1017 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T13 118-127 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T14 559-571 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T91 0-274 Sentence denotes By conventional histopathological assessment, the peribronchial alveolar parenchyma of sample I showed DAD with focal formation of hyaline membranes adjacent to the epithelial lining, moderate lymphocytic interstitial pneumonia and singular thrombi in small pulmonary veins.
T92 275-496 Sentence denotes There is a moderate hypertrophy of the muscular media in smaller pre- and post-capillary blood vessels with desquamation of the endothelial cell layer as well as mild centrilobular emphysema (original magnification 100×).
T93 497-586 Sentence denotes In PC-CT, enlarged alveolar septa with pronounced lymphocytic inflammation are displayed.
T94 587-722 Sentence denotes The reconstruction volume contains a large artery filled with erythrocytes (Figure 3-I, lower left), which bifurcates into two vessels.
T95 723-788 Sentence denotes This area was then selected for the 1 mm biopsy punch extraction.
T96 789-876 Sentence denotes The cone-beam zoom tomogram was then centered around the perimeter of the blood vessel.
T97 877-1018 Sentence denotes This volume is particularly well suited to investigate the connective tissue including elastic fibers and collagen, as well as smooth muscle.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 221-230 Phenotype denotes umonia an http://purl.obolibrary.org/obo/HP_0002090
T16 386-398 Phenotype denotes quamation of http://purl.obolibrary.org/obo/HP_0040189
T17 445-468 Phenotype denotes trilobular emphysema (o http://purl.obolibrary.org/obo/HP_0032966

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
153 193-227 Disease denotes lymphocytic interstitial pneumonia MESH:D009395
154 295-306 Disease denotes hypertrophy MESH:D006984
155 456-465 Disease denotes emphysema MESH:D004646
156 547-571 Disease denotes lymphocytic inflammation MESH:D007249
157 500-505 CellLine denotes PC-CT CVCL:B848