PMC:7464116 / 0-613
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 17-23 | Body_part | denotes | Kidney | http://purl.org/sig/ont/fma/fma7203 |
| T2 | 481-487 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T3 | 581-589 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 17-23 | Body_part | denotes | Kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T2 | 481-487 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 0-8 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 94-112 | Disease | denotes | infectious disease | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T3 | 113-137 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T4 | 139-147 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T5 | 257-304 | Disease | denotes | severe acute respiratory syndrome-coronavirus-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T6 | 257-290 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 306-314 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T8 | 306-310 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T9 | 473-495 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T10 | 481-495 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
| T12 | 497-500 | Disease | denotes | CKD | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T13 | 525-533 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T14 | 525-529 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T15 | 536-545 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 17-23 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | Kidney |
| T2 | 17-23 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | Kidney |
| T3 | 17-23 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | Kidney |
| T4 | 213-214 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5 | 327-330 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T6 | 481-487 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T7 | 481-487 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T8 | 481-487 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-24 | Sentence | denotes | COVID-19 and the Kidney: |
| T2 | 25-63 | Sentence | denotes | From Epidemiology to Clinical Practice |
| T3 | 65-73 | Sentence | denotes | Abstract |
| T4 | 74-397 | Sentence | denotes | The new respiratory infectious disease coronavirus disease 2019 (COVID-19) that originated in Wuhan, China, in December 2019 and caused by a new strain of zoonotic coronavirus, named severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2), to date has killed over 630,000 people and infected over 15,000,000 worldwide. |
| T5 | 398-502 | Sentence | denotes | Most of the deceased patients had pre-existing comorbidities; over 20% had chronic kidney disease (CKD). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 473-495 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
| T2 | 497-500 | Phenotype | denotes | CKD | http://purl.obolibrary.org/obo/HP_0012622 |
| T3 | 573-596 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 0-8 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 25 | 257-304 | Species | denotes | severe acute respiratory syndrome-coronavirus-2 | Tax:2697049 |
| 26 | 306-316 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 27 | 351-357 | Species | denotes | people | Tax:9606 |
| 28 | 419-427 | Species | denotes | patients | Tax:9606 |
| 31 | 94-112 | Disease | denotes | infectious disease | MESH:D003141 |
| 32 | 113-137 | Disease | denotes | coronavirus disease 2019 | MESH:C000657245 |
| 33 | 139-147 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 34 | 229-249 | Disease | denotes | zoonotic coronavirus | MESH:D015047 |
| 35 | 362-370 | Disease | denotes | infected | MESH:D007239 |
| 36 | 473-495 | Disease | denotes | chronic kidney disease | MESH:D051436 |
| 37 | 497-500 | Disease | denotes | CKD | MESH:D012080 |
| 38 | 525-545 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 39 | 581-596 | Disease | denotes | alveolar damage | MESH:D055370 |