PMC:7463108 / 73539-76918 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7463108","sourcedb":"PMC","sourceid":"7463108","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7463108","text":"HIV-1 Genetics\nGenetic differences among HIV-1 variants have a significant impact on HIV transmission, disease progression, as well as the response to ARV therapy (see reviews, Geretti 2006; Taylor et al. 2008; Tyor et al. 2013; Tables 1 and 2). Pre-cART studies provide substantial evidence that HIV clade differences can influence HAND (Gupta et al. 2007; Sacktor et al. 2009; Boivin et al. 2010; McArthur et al. 2010; Rao et al. 2013), with HAND severity being highest for clade D and B strains, followed by C and A clades (Tyor et al. 2013). These findings are supported by preclinical studies in which clade B or clade C HIV-infected macrophages were intracranially injected into severe combined immunodeficient mice (SCID) mice. Exposure to clade B isolates induced more severe memory deficits, as well as greater astrogliosis and neuronal damage (Rao et al. 2008, 2013). In another example, the Tat dicysteine motif (CC) at positions 30 and 31, which is commonly found in clade B isolates, appears to worsen HAND (Mishra et al. 2008; Rao et al. 2013) and has been studied extensively in vitro (Ranga et al. 2004; Rao et al. 2008; Zou et al. 2011; Krishnan and Chatterjee 2015). Clade B Tat is more intrinsically cytotoxic to primary neurons in vitro than clade C Tat (Li et al. 2008; Campbell et al. 2011; Zou et al. 2011), resulting in increased proinflammatory cytokine production (e.g., IL-6 and TNF-α) (Gandhi et al. 2009) and monocyte recruitment/migration into the brain (Ranga et al. 2004; Rao et al. 2008), and increased disruption of the BBB (Gandhi et al. 2010). Similarly, the production of the inflammatory mediators prostaglandin E2 and the thromboxane A2 receptor by astrocytes is more significantly increased by clade B than clade C gp120 (Samikkannu et al. 2011). Sequence and structural alterations in gp120 have been demonstrated between clades B and C (Gnanakaran et al. 2007) and potentially contribute to these observed differences.\nWhen considering effects of HIV clade variants in the presence of opioids, the overall toxicity in MSNs seen with clade C Tat (30% neuronal losses) was considerably less than with clade B (70% losses) (Zou et al. 2011). Although clade B HIV predominates in Western countries, future clinical longitudinal studies are necessary that employ HIV clade testing in HIV-1 infected opioid users to confirm the hypothesis that opioid interactive effects on HAND pathogenesis depend on the HIV clade assessed.\nBesides HIV genetic diversity, differences in HIV tropism add another level of complexity. Morphine interactions can differ significantly between X4 and R5-tropic gp120 variants depending on the outcome measure (El-Hage et al. 2011b; Podhaizer et al. 2012; Balinang et al. 2017; Kim et al. 2018). Increased infectivity in the presence of morphine was noted for the R5-tropic HIV-1SF162 strain in a human hepatoma Huh7.5.1 cell line model, whereas the infectivity rate with the X4-tropic HIV-1LAI/IIIB strain was unaffected by morphine (El-Hage et al. 2011b).\nTo date, no clinical studies have assessed whether opioid interactions with R5- or R4-preferring HIV strains differentially impact the severity of HAND. However, the findings from preclinical studies indicate that HIV-1 strain-specific differences are critical determinants in shaping both the timing and pattern of neurotoxic interactions with opioid drugs.","divisions":[{"label":"title","span":{"begin":0,"end":14}},{"label":"p","span":{"begin":15,"end":1960}},{"label":"p","span":{"begin":1961,"end":2461}},{"label":"p","span":{"begin":2462,"end":3020}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T713","span":{"begin":0,"end":3},"obj":"Body_part"},{"id":"T714","span":{"begin":41,"end":44},"obj":"Body_part"},{"id":"T715","span":{"begin":85,"end":88},"obj":"Body_part"},{"id":"T716","span":{"begin":297,"end":300},"obj":"Body_part"},{"id":"T717","span":{"begin":333,"end":337},"obj":"Body_part"},{"id":"T718","span":{"begin":444,"end":448},"obj":"Body_part"},{"id":"T719","span":{"begin":626,"end":629},"obj":"Body_part"},{"id":"T720","span":{"begin":639,"end":650},"obj":"Body_part"},{"id":"T721","span":{"begin":1015,"end":1019},"obj":"Body_part"},{"id":"T722","span":{"begin":1240,"end":1247},"obj":"Body_part"},{"id":"T723","span":{"begin":1370,"end":1378},"obj":"Body_part"},{"id":"T724","span":{"begin":1438,"end":1446},"obj":"Body_part"},{"id":"T725","span":{"begin":1478,"end":1483},"obj":"Body_part"},{"id":"T726","span":{"begin":1673,"end":1675},"obj":"Body_part"},{"id":"T727","span":{"begin":1688,"end":1698},"obj":"Body_part"},{"id":"T728","span":{"begin":1989,"end":1992},"obj":"Body_part"},{"id":"T729","span":{"begin":2198,"end":2201},"obj":"Body_part"},{"id":"T730","span":{"begin":2300,"end":2303},"obj":"Body_part"},{"id":"T731","span":{"begin":2321,"end":2324},"obj":"Body_part"},{"id":"T732","span":{"begin":2410,"end":2414},"obj":"Body_part"},{"id":"T733","span":{"begin":2442,"end":2445},"obj":"Body_part"},{"id":"T734","span":{"begin":2470,"end":2473},"obj":"Body_part"},{"id":"T735","span":{"begin":2508,"end":2511},"obj":"Body_part"},{"id":"T736","span":{"begin":2837,"end":2840},"obj":"Body_part"},{"id":"T737","span":{"begin":2884,"end":2888},"obj":"Body_part"},{"id":"T738","span":{"begin":2949,"end":2952},"obj":"Body_part"},{"id":"T739","span":{"begin":3118,"end":3121},"obj":"Body_part"},{"id":"T740","span":{"begin":3168,"end":3172},"obj":"Body_part"},{"id":"T741","span":{"begin":3235,"end":3238},"obj":"Body_part"}],"attributes":[{"id":"A713","pred":"fma_id","subj":"T713","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A714","pred":"fma_id","subj":"T714","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A715","pred":"fma_id","subj":"T715","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A716","pred":"fma_id","subj":"T716","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A717","pred":"fma_id","subj":"T717","obj":"http://purl.org/sig/ont/fma/fma9712"},{"id":"A718","pred":"fma_id","subj":"T718","obj":"http://purl.org/sig/ont/fma/fma9712"},{"id":"A719","pred":"fma_id","subj":"T719","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A720","pred":"fma_id","subj":"T720","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A721","pred":"fma_id","subj":"T721","obj":"http://purl.org/sig/ont/fma/fma9712"},{"id":"A722","pred":"fma_id","subj":"T722","obj":"http://purl.org/sig/ont/fma/fma54527"},{"id":"A723","pred":"fma_id","subj":"T723","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A724","pred":"fma_id","subj":"T724","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A725","pred":"fma_id","subj":"T725","obj":"http://purl.org/sig/ont/fma/fma50801"},{"id":"A726","pred":"fma_id","subj":"T726","obj":"http://purl.org/sig/ont/fma/fma66595"},{"id":"A727","pred":"fma_id","subj":"T727","obj":"http://purl.org/sig/ont/fma/fma54537"},{"id":"A728","pred":"fma_id","subj":"T728","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A729","pred":"fma_id","subj":"T729","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A730","pred":"fma_id","subj":"T730","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A731","pred":"fma_id","subj":"T731","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A732","pred":"fma_id","subj":"T732","obj":"http://purl.org/sig/ont/fma/fma9712"},{"id":"A733","pred":"fma_id","subj":"T733","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A734","pred":"fma_id","subj":"T734","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A735","pred":"fma_id","subj":"T735","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A736","pred":"fma_id","subj":"T736","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A737","pred":"fma_id","subj":"T737","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A738","pred":"fma_id","subj":"T738","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A739","pred":"fma_id","subj":"T739","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A740","pred":"fma_id","subj":"T740","obj":"http://purl.org/sig/ont/fma/fma9712"},{"id":"A741","pred":"fma_id","subj":"T741","obj":"http://purl.org/sig/ont/fma/fma278683"},{"subj":"T713","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T714","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T715","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T716","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T717","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T718","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T719","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T720","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T721","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T722","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T723","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T724","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T725","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T726","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T727","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T728","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T729","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T730","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T731","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T732","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T733","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T734","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T735","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T736","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T737","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T738","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T739","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T740","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T741","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T167","span":{"begin":1478,"end":1483},"obj":"Body_part"}],"attributes":[{"id":"A167","pred":"uberon_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/UBERON_0000955"},{"subj":"T167","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T172","span":{"begin":685,"end":716},"obj":"Disease"},{"id":"T173","span":{"begin":723,"end":727},"obj":"Disease"},{"id":"T174","span":{"begin":2615,"end":2617},"obj":"Disease"},{"id":"T175","span":{"begin":2827,"end":2829},"obj":"Disease"},{"id":"T176","span":{"begin":2866,"end":2874},"obj":"Disease"},{"id":"T177","span":{"begin":3097,"end":3099},"obj":"Disease"},{"id":"T178","span":{"begin":3104,"end":3106},"obj":"Disease"}],"attributes":[{"id":"A172","pred":"mondo_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/MONDO_0015974"},{"id":"A173","pred":"mondo_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/MONDO_0015974"},{"id":"A174","pred":"mondo_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/MONDO_0016654"},{"id":"A175","pred":"mondo_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/MONDO_0016654"},{"id":"A176","pred":"mondo_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/MONDO_0007256"},{"id":"A177","pred":"mondo_id","subj":"T177","obj":"http://purl.obolibrary.org/obo/MONDO_0016654"},{"id":"A178","pred":"mondo_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/MONDO_0015439"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T175","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T176","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T177","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T178","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T784","span":{"begin":61,"end":62},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T785","span":{"begin":488,"end":489},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T786","span":{"begin":517,"end":518},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T787","span":{"begin":613,"end":614},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T788","span":{"begin":753,"end":754},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T789","span":{"begin":985,"end":986},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T790","span":{"begin":1062,"end":1065},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T791","span":{"begin":1191,"end":1192},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T792","span":{"begin":1275,"end":1277},"obj":"http://purl.obolibrary.org/obo/CLO_0001022"},{"id":"T793","span":{"begin":1275,"end":1277},"obj":"http://purl.obolibrary.org/obo/CLO_0007314"},{"id":"T794","span":{"begin":1438,"end":1446},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T795","span":{"begin":1478,"end":1483},"obj":"http://purl.obolibrary.org/obo/UBERON_0000955"},{"id":"T796","span":{"begin":1478,"end":1483},"obj":"http://www.ebi.ac.uk/efo/EFO_0000302"},{"id":"T797","span":{"begin":1650,"end":1652},"obj":"http://purl.obolibrary.org/obo/CLO_0002860"},{"id":"T798","span":{"begin":1673,"end":1675},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"},{"id":"T799","span":{"begin":1688,"end":1698},"obj":"http://purl.obolibrary.org/obo/CL_0000127"},{"id":"T800","span":{"begin":1740,"end":1741},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T801","span":{"begin":1870,"end":1871},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T802","span":{"begin":2147,"end":2148},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T803","span":{"begin":2196,"end":2197},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T804","span":{"begin":2310,"end":2317},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T805","span":{"begin":2752,"end":2756},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T806","span":{"begin":2858,"end":2859},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T807","span":{"begin":2860,"end":2865},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T808","span":{"begin":2884,"end":2893},"obj":"http://purl.obolibrary.org/obo/CLO_0000031"}],"attributes":[{"subj":"T784","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T785","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T786","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T787","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T788","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T789","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T790","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T791","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T792","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T793","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T794","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T795","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T796","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T797","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T798","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T799","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T800","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T801","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T802","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T803","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T804","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T805","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T806","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T807","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T808","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T58410","span":{"begin":924,"end":926},"obj":"Chemical"},{"id":"T18687","span":{"begin":1275,"end":1277},"obj":"Chemical"},{"id":"T241","span":{"begin":1397,"end":1399},"obj":"Chemical"},{"id":"T26700","span":{"begin":1636,"end":1652},"obj":"Chemical"},{"id":"T67686","span":{"begin":1636,"end":1649},"obj":"Chemical"},{"id":"T87939","span":{"begin":1661,"end":1675},"obj":"Chemical"},{"id":"T85438","span":{"begin":1661,"end":1672},"obj":"Chemical"},{"id":"T77864","span":{"begin":2553,"end":2561},"obj":"Chemical"},{"id":"T86034","span":{"begin":2800,"end":2808},"obj":"Chemical"},{"id":"T48999","span":{"begin":2988,"end":2996},"obj":"Chemical"},{"id":"T254","span":{"begin":3373,"end":3378},"obj":"Chemical"}],"attributes":[{"id":"A65970","pred":"chebi_id","subj":"T58410","obj":"http://purl.obolibrary.org/obo/CHEBI_28940"},{"id":"A28348","pred":"chebi_id","subj":"T18687","obj":"http://purl.obolibrary.org/obo/CHEBI_30145"},{"id":"A21891","pred":"chebi_id","subj":"T241","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A89061","pred":"chebi_id","subj":"T241","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A982","pred":"chebi_id","subj":"T26700","obj":"http://purl.obolibrary.org/obo/CHEBI_15551"},{"id":"A3596","pred":"chebi_id","subj":"T26700","obj":"http://purl.obolibrary.org/obo/CHEBI_606564"},{"id":"A12034","pred":"chebi_id","subj":"T67686","obj":"http://purl.obolibrary.org/obo/CHEBI_26333"},{"id":"A20280","pred":"chebi_id","subj":"T87939","obj":"http://purl.obolibrary.org/obo/CHEBI_15627"},{"id":"A35010","pred":"chebi_id","subj":"T87939","obj":"http://purl.obolibrary.org/obo/CHEBI_57445"},{"id":"A49890","pred":"chebi_id","subj":"T85438","obj":"http://purl.obolibrary.org/obo/CHEBI_26995"},{"id":"A96776","pred":"chebi_id","subj":"T77864","obj":"http://purl.obolibrary.org/obo/CHEBI_17303"},{"id":"A10395","pred":"chebi_id","subj":"T86034","obj":"http://purl.obolibrary.org/obo/CHEBI_17303"},{"id":"A86010","pred":"chebi_id","subj":"T86034","obj":"http://purl.obolibrary.org/obo/CHEBI_58097"},{"id":"A98323","pred":"chebi_id","subj":"T48999","obj":"http://purl.obolibrary.org/obo/CHEBI_17303"},{"id":"A40073","pred":"chebi_id","subj":"T48999","obj":"http://purl.obolibrary.org/obo/CHEBI_58097"},{"id":"A80037","pred":"chebi_id","subj":"T254","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"subj":"T58410","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T18687","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T241","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T26700","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T67686","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T87939","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T85438","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T77864","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T86034","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T48999","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T254","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2515","span":{"begin":0,"end":5},"obj":"Species"},{"id":"2540","span":{"begin":1193,"end":1196},"obj":"Gene"},{"id":"2541","span":{"begin":1270,"end":1273},"obj":"Gene"},{"id":"2542","span":{"begin":1397,"end":1401},"obj":"Gene"},{"id":"2543","span":{"begin":1406,"end":1411},"obj":"Gene"},{"id":"2544","span":{"begin":1755,"end":1760},"obj":"Gene"},{"id":"2545","span":{"begin":1826,"end":1831},"obj":"Gene"},{"id":"2546","span":{"begin":1504,"end":1507},"obj":"Gene"},{"id":"2547","span":{"begin":1120,"end":1123},"obj":"Gene"},{"id":"2548","span":{"begin":1041,"end":1044},"obj":"Gene"},{"id":"2549","span":{"begin":854,"end":857},"obj":"Gene"},{"id":"2551","span":{"begin":41,"end":46},"obj":"Species"},{"id":"2552","span":{"begin":717,"end":721},"obj":"Species"},{"id":"2553","span":{"begin":729,"end":733},"obj":"Species"},{"id":"2554","span":{"begin":85,"end":88},"obj":"Species"},{"id":"2555","span":{"begin":297,"end":300},"obj":"Species"},{"id":"2556","span":{"begin":1673,"end":1675},"obj":"Gene"},{"id":"2557","span":{"begin":902,"end":905},"obj":"Gene"},{"id":"2558","span":{"begin":1636,"end":1652},"obj":"Chemical"},{"id":"2559","span":{"begin":624,"end":638},"obj":"Disease"},{"id":"2560","span":{"begin":701,"end":716},"obj":"Disease"},{"id":"2561","span":{"begin":723,"end":727},"obj":"Disease"},{"id":"2562","span":{"begin":784,"end":799},"obj":"Disease"},{"id":"2563","span":{"begin":820,"end":852},"obj":"Disease"},{"id":"2571","span":{"begin":2083,"end":2086},"obj":"Gene"},{"id":"2572","span":{"begin":1989,"end":1992},"obj":"Species"},{"id":"2573","span":{"begin":2198,"end":2201},"obj":"Species"},{"id":"2574","span":{"begin":2300,"end":2303},"obj":"Species"},{"id":"2575","span":{"begin":2442,"end":2445},"obj":"Species"},{"id":"2576","span":{"begin":2048,"end":2056},"obj":"Disease"},{"id":"2577","span":{"begin":2321,"end":2335},"obj":"Disease"},{"id":"2591","span":{"begin":2625,"end":2630},"obj":"Gene"},{"id":"2592","span":{"begin":3001,"end":3005},"obj":"Gene"},{"id":"2593","span":{"begin":2677,"end":2681},"obj":"Gene"},{"id":"2594","span":{"begin":2837,"end":2842},"obj":"Species"},{"id":"2595","span":{"begin":2860,"end":2865},"obj":"Species"},{"id":"2596","span":{"begin":2949,"end":2954},"obj":"Species"},{"id":"2597","span":{"begin":2470,"end":2473},"obj":"Species"},{"id":"2598","span":{"begin":2553,"end":2561},"obj":"Chemical"},{"id":"2599","span":{"begin":2800,"end":2808},"obj":"Chemical"},{"id":"2600","span":{"begin":2988,"end":2996},"obj":"Chemical"},{"id":"2601","span":{"begin":2508,"end":2519},"obj":"Disease"},{"id":"2602","span":{"begin":2866,"end":2874},"obj":"Disease"},{"id":"2603","span":{"begin":2875,"end":2883},"obj":"CellLine"},{"id":"2607","span":{"begin":3235,"end":3240},"obj":"Species"},{"id":"2608","span":{"begin":3118,"end":3121},"obj":"Species"},{"id":"2609","span":{"begin":3337,"end":3347},"obj":"Disease"}],"attributes":[{"id":"A2515","pred":"tao:has_database_id","subj":"2515","obj":"Tax:11676"},{"id":"A2540","pred":"tao:has_database_id","subj":"2540","obj":"Gene:6898"},{"id":"A2541","pred":"tao:has_database_id","subj":"2541","obj":"Gene:6898"},{"id":"A2542","pred":"tao:has_database_id","subj":"2542","obj":"Gene:3569"},{"id":"A2543","pred":"tao:has_database_id","subj":"2543","obj":"Gene:7124"},{"id":"A2544","pred":"tao:has_database_id","subj":"2544","obj":"Gene:3700"},{"id":"A2545","pred":"tao:has_database_id","subj":"2545","obj":"Gene:3700"},{"id":"A2546","pred":"tao:has_database_id","subj":"2546","obj":"Gene:237940"},{"id":"A2547","pred":"tao:has_database_id","subj":"2547","obj":"Gene:237940"},{"id":"A2548","pred":"tao:has_database_id","subj":"2548","obj":"Gene:237940"},{"id":"A2549","pred":"tao:has_database_id","subj":"2549","obj":"Gene:237940"},{"id":"A2551","pred":"tao:has_database_id","subj":"2551","obj":"Tax:11676"},{"id":"A2552","pred":"tao:has_database_id","subj":"2552","obj":"Tax:10090"},{"id":"A2553","pred":"tao:has_database_id","subj":"2553","obj":"Tax:10090"},{"id":"A2554","pred":"tao:has_database_id","subj":"2554","obj":"Tax:12721"},{"id":"A2555","pred":"tao:has_database_id","subj":"2555","obj":"Tax:12721"},{"id":"A2556","pred":"tao:has_database_id","subj":"2556","obj":"Gene:170589"},{"id":"A2557","pred":"tao:has_database_id","subj":"2557","obj":"Gene:6898"},{"id":"A2558","pred":"tao:has_database_id","subj":"2558","obj":"MESH:D015232"},{"id":"A2559","pred":"tao:has_database_id","subj":"2559","obj":"MESH:D015658"},{"id":"A2560","pred":"tao:has_database_id","subj":"2560","obj":"MESH:D007153"},{"id":"A2561","pred":"tao:has_database_id","subj":"2561","obj":"MESH:D053632"},{"id":"A2562","pred":"tao:has_database_id","subj":"2562","obj":"MESH:D008569"},{"id":"A2563","pred":"tao:has_database_id","subj":"2563","obj":"MESH:D009410"},{"id":"A2571","pred":"tao:has_database_id","subj":"2571","obj":"Gene:6898"},{"id":"A2572","pred":"tao:has_database_id","subj":"2572","obj":"Tax:12721"},{"id":"A2573","pred":"tao:has_database_id","subj":"2573","obj":"Tax:12721"},{"id":"A2574","pred":"tao:has_database_id","subj":"2574","obj":"Tax:12721"},{"id":"A2575","pred":"tao:has_database_id","subj":"2575","obj":"Tax:12721"},{"id":"A2576","pred":"tao:has_database_id","subj":"2576","obj":"MESH:D064420"},{"id":"A2577","pred":"tao:has_database_id","subj":"2577","obj":"MESH:D015658"},{"id":"A2591","pred":"tao:has_database_id","subj":"2591","obj":"Gene:3700"},{"id":"A2592","pred":"tao:has_database_id","subj":"2592","obj":"Gene:55510"},{"id":"A2593","pred":"tao:has_database_id","subj":"2593","obj":"Gene:55510"},{"id":"A2594","pred":"tao:has_database_id","subj":"2594","obj":"Tax:11676"},{"id":"A2595","pred":"tao:has_database_id","subj":"2595","obj":"Tax:9606"},{"id":"A2596","pred":"tao:has_database_id","subj":"2596","obj":"Tax:11676"},{"id":"A2597","pred":"tao:has_database_id","subj":"2597","obj":"Tax:12721"},{"id":"A2598","pred":"tao:has_database_id","subj":"2598","obj":"MESH:D009020"},{"id":"A2599","pred":"tao:has_database_id","subj":"2599","obj":"MESH:D009020"},{"id":"A2600","pred":"tao:has_database_id","subj":"2600","obj":"MESH:D009020"},{"id":"A2601","pred":"tao:has_database_id","subj":"2601","obj":"MESH:D015658"},{"id":"A2602","pred":"tao:has_database_id","subj":"2602","obj":"MESH:D006528"},{"id":"A2603","pred":"tao:has_database_id","subj":"2603","obj":"CVCL:E049"},{"id":"A2607","pred":"tao:has_database_id","subj":"2607","obj":"Tax:11676"},{"id":"A2608","pred":"tao:has_database_id","subj":"2608","obj":"Tax:12721"},{"id":"A2609","pred":"tao:has_database_id","subj":"2609","obj":"MESH:D020258"},{"subj":"2515","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2540","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2541","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2542","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2543","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2544","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2545","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2546","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2547","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2548","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2549","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2551","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2552","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2553","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2554","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2555","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2556","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2557","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2558","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2559","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2560","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2561","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2562","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2563","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2571","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2572","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2573","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2574","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2575","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2576","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2577","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2591","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2592","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2593","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2594","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2595","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2596","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2597","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2598","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2599","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2600","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2601","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2602","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2603","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2607","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2608","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2609","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T146","span":{"begin":784,"end":790},"obj":"http://purl.obolibrary.org/obo/GO_0007613"},{"id":"T147","span":{"begin":1370,"end":1389},"obj":"http://purl.obolibrary.org/obo/GO_0001816"},{"id":"T148","span":{"begin":2415,"end":2427},"obj":"http://purl.obolibrary.org/obo/GO_0009405"},{"id":"T149","span":{"begin":2512,"end":2519},"obj":"http://purl.obolibrary.org/obo/GO_0009606"}],"attributes":[{"subj":"T146","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T147","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T148","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T149","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1003","span":{"begin":0,"end":14},"obj":"Sentence"},{"id":"T1004","span":{"begin":15,"end":204},"obj":"Sentence"},{"id":"T1005","span":{"begin":205,"end":222},"obj":"Sentence"},{"id":"T1006","span":{"begin":223,"end":245},"obj":"Sentence"},{"id":"T1007","span":{"begin":246,"end":351},"obj":"Sentence"},{"id":"T1008","span":{"begin":352,"end":372},"obj":"Sentence"},{"id":"T1009","span":{"begin":373,"end":392},"obj":"Sentence"},{"id":"T1010","span":{"begin":393,"end":414},"obj":"Sentence"},{"id":"T1011","span":{"begin":415,"end":431},"obj":"Sentence"},{"id":"T1012","span":{"begin":432,"end":538},"obj":"Sentence"},{"id":"T1013","span":{"begin":539,"end":545},"obj":"Sentence"},{"id":"T1014","span":{"begin":546,"end":734},"obj":"Sentence"},{"id":"T1015","span":{"begin":735,"end":864},"obj":"Sentence"},{"id":"T1016","span":{"begin":865,"end":877},"obj":"Sentence"},{"id":"T1017","span":{"begin":878,"end":1034},"obj":"Sentence"},{"id":"T1018","span":{"begin":1035,"end":1051},"obj":"Sentence"},{"id":"T1019","span":{"begin":1052,"end":1113},"obj":"Sentence"},{"id":"T1020","span":{"begin":1114,"end":1130},"obj":"Sentence"},{"id":"T1021","span":{"begin":1131,"end":1147},"obj":"Sentence"},{"id":"T1022","span":{"begin":1148,"end":1184},"obj":"Sentence"},{"id":"T1023","span":{"begin":1185,"end":1284},"obj":"Sentence"},{"id":"T1024","span":{"begin":1285,"end":1306},"obj":"Sentence"},{"id":"T1025","span":{"begin":1307,"end":1323},"obj":"Sentence"},{"id":"T1026","span":{"begin":1324,"end":1427},"obj":"Sentence"},{"id":"T1027","span":{"begin":1428,"end":1497},"obj":"Sentence"},{"id":"T1028","span":{"begin":1498,"end":1514},"obj":"Sentence"},{"id":"T1029","span":{"begin":1515,"end":1572},"obj":"Sentence"},{"id":"T1030","span":{"begin":1573,"end":1579},"obj":"Sentence"},{"id":"T1031","span":{"begin":1580,"end":1779},"obj":"Sentence"},{"id":"T1032","span":{"begin":1780,"end":1786},"obj":"Sentence"},{"id":"T1033","span":{"begin":1787,"end":1896},"obj":"Sentence"},{"id":"T1034","span":{"begin":1897,"end":1960},"obj":"Sentence"},{"id":"T1035","span":{"begin":1961,"end":2173},"obj":"Sentence"},{"id":"T1036","span":{"begin":2174,"end":2180},"obj":"Sentence"},{"id":"T1037","span":{"begin":2181,"end":2461},"obj":"Sentence"},{"id":"T1038","span":{"begin":2462,"end":2552},"obj":"Sentence"},{"id":"T1039","span":{"begin":2553,"end":2688},"obj":"Sentence"},{"id":"T1040","span":{"begin":2689,"end":2712},"obj":"Sentence"},{"id":"T1041","span":{"begin":2713,"end":2734},"obj":"Sentence"},{"id":"T1042","span":{"begin":2735,"end":2751},"obj":"Sentence"},{"id":"T1043","span":{"begin":2752,"end":2758},"obj":"Sentence"},{"id":"T1044","span":{"begin":2759,"end":3012},"obj":"Sentence"},{"id":"T1045","span":{"begin":3013,"end":3020},"obj":"Sentence"},{"id":"T1046","span":{"begin":3021,"end":3173},"obj":"Sentence"},{"id":"T1047","span":{"begin":3174,"end":3379},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1003","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1004","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1005","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1006","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1007","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1008","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1009","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1010","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1011","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1012","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1013","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1014","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1015","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1016","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1017","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1018","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1019","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1020","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1021","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1022","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1023","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1024","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1025","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1026","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1027","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1028","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1029","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1030","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1031","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1032","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1033","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1034","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1035","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1036","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1037","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1038","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1039","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1040","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1041","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1042","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1043","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1044","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1045","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1046","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1047","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T57","span":{"begin":685,"end":716},"obj":"Phenotype"},{"id":"T58","span":{"begin":2092,"end":2107},"obj":"Phenotype"}],"attributes":[{"id":"A57","pred":"hp_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/HP_0004430"},{"id":"A58","pred":"hp_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/HP_0002529"},{"subj":"T57","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"2_test","denotations":[{"id":"32876803-16374210-62958230","span":{"begin":185,"end":189},"obj":"16374210"},{"id":"32876803-18403767-62958231","span":{"begin":205,"end":209},"obj":"18403767"},{"id":"32876803-20517932-62958232","span":{"begin":415,"end":419},"obj":"20517932"},{"id":"32876803-23758766-62958233","span":{"begin":432,"end":436},"obj":"23758766"},{"id":"32876803-18829958-62958234","span":{"begin":865,"end":869},"obj":"18829958"},{"id":"32876803-23758766-62958235","span":{"begin":871,"end":875},"obj":"23758766"},{"id":"32876803-18074388-62958236","span":{"begin":1035,"end":1039},"obj":"18074388"},{"id":"32876803-23758766-62958237","span":{"begin":1052,"end":1056},"obj":"23758766"},{"id":"32876803-14963162-62958238","span":{"begin":1114,"end":1118},"obj":"14963162"},{"id":"32876803-18829958-62958239","span":{"begin":1131,"end":1135},"obj":"18829958"},{"id":"32876803-14963162-62958240","span":{"begin":1498,"end":1502},"obj":"14963162"},{"id":"32876803-18829958-62958241","span":{"begin":1515,"end":1519},"obj":"18829958"},{"id":"32876803-17166900-62958242","span":{"begin":1897,"end":1901},"obj":"17166900"},{"id":"32876803-22101471-62958244","span":{"begin":2713,"end":2717},"obj":"22101471"},{"id":"32876803-28099189-62958245","span":{"begin":2735,"end":2739},"obj":"28099189"}],"attributes":[{"subj":"32876803-16374210-62958230","pred":"source","obj":"2_test"},{"subj":"32876803-18403767-62958231","pred":"source","obj":"2_test"},{"subj":"32876803-20517932-62958232","pred":"source","obj":"2_test"},{"subj":"32876803-23758766-62958233","pred":"source","obj":"2_test"},{"subj":"32876803-18829958-62958234","pred":"source","obj":"2_test"},{"subj":"32876803-23758766-62958235","pred":"source","obj":"2_test"},{"subj":"32876803-18074388-62958236","pred":"source","obj":"2_test"},{"subj":"32876803-23758766-62958237","pred":"source","obj":"2_test"},{"subj":"32876803-14963162-62958238","pred":"source","obj":"2_test"},{"subj":"32876803-18829958-62958239","pred":"source","obj":"2_test"},{"subj":"32876803-14963162-62958240","pred":"source","obj":"2_test"},{"subj":"32876803-18829958-62958241","pred":"source","obj":"2_test"},{"subj":"32876803-17166900-62958242","pred":"source","obj":"2_test"},{"subj":"32876803-22101471-62958244","pred":"source","obj":"2_test"},{"subj":"32876803-28099189-62958245","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecd9","default":true},{"id":"LitCovid-PD-UBERON","color":"#ecbf93"},{"id":"LitCovid-PD-MONDO","color":"#a593ec"},{"id":"LitCovid-PD-CLO","color":"#9aec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93b4"},{"id":"LitCovid-PubTator","color":"#93ceec"},{"id":"LitCovid-PD-GO-BP","color":"#e8ec93"},{"id":"LitCovid-sentences","color":"#d693ec"},{"id":"LitCovid-PD-HP","color":"#93ecbb"},{"id":"2_test","color":"#eca193"}]}]}}