PMC:7463108 / 105197-111927 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 53-56 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T39 511-514 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T40 876-880 Body_part denotes bile http://purl.org/sig/ont/fma/fma62971
T41 2387-2393 Body_part denotes Plasma http://purl.org/sig/ont/fma/fma62970
T42 2457-2463 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T43 2485-2488 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T44 2562-2565 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T45 2576-2579 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T46 2619-2624 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T47 2712-2715 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T48 2738-2743 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T49 2744-2750 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T50 2910-2915 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T51 2916-2919 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T52 3014-3017 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T53 3025-3030 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T54 3116-3121 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T55 3140-3143 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T56 3234-3239 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T57 3263-3266 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T58 3325-3330 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T59 3331-3337 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T60 3471-3476 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T61 3598-3603 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T62 3685-3690 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T63 4045-4052 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T64 4123-4128 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T65 4170-4173 Body_part denotes CNS http://purl.org/sig/ont/fma/fma55675
T66 4188-4191 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T67 4215-4224 Body_part denotes microglia http://purl.org/sig/ont/fma/fma68923
T68 4242-4253 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T69 4265-4270 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T70 4288-4298 Body_part denotes astrocytes http://purl.org/sig/ont/fma/fma54537
T71 4304-4313 Body_part denotes pericytes http://purl.org/sig/ont/fma/fma63174
T72 4545-4556 Body_part denotes neural cell http://purl.org/sig/ont/fma/fma70333
T73 4552-4556 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T74 4585-4590 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T75 4795-4803 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T76 4812-4823 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T77 4913-4923 Body_part denotes astrocytes http://purl.org/sig/ont/fma/fma54537
T78 5010-5020 Body_part denotes astrocytes http://purl.org/sig/ont/fma/fma54537
T79 5176-5185 Body_part denotes microglia http://purl.org/sig/ont/fma/fma68923
T80 5338-5348 Body_part denotes astrocytes http://purl.org/sig/ont/fma/fma54537
T81 5350-5359 Body_part denotes microglia http://purl.org/sig/ont/fma/fma68923
T82 5361-5370 Body_part denotes pericytes http://purl.org/sig/ont/fma/fma63174
T83 5498-5503 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T84 5504-5508 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T85 5586-5590 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T86 5796-5806 Body_part denotes astrocytes http://purl.org/sig/ont/fma/fma54537
T87 6158-6163 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T190 53-56 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017
T191 511-514 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017
T192 876-880 Body_part denotes bile http://purl.obolibrary.org/obo/UBERON_0001970
T193 2457-2463 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T194 2485-2488 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017
T195 2619-2624 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T196 2738-2743 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T197 2744-2750 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T198 2910-2915 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T199 3025-3030 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T200 3116-3121 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T201 3234-3239 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T202 3325-3330 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T203 3331-3337 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T204 3471-3476 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T205 3598-3603 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T206 3685-3690 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T207 4123-4128 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T208 4170-4173 Body_part denotes CNS http://purl.obolibrary.org/obo/UBERON_0001017
T209 4265-4270 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T210 5498-5503 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T210 4447-4456 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T211 6034-6037 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T212 6192-6195 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T213 6196-6205 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T46 53-56 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T47 53-56 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T48 86-89 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T49 511-514 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T50 511-514 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T51 758-764 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T52 1442-1443 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 2340-2347 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T54 2387-2393 http://purl.obolibrary.org/obo/UBERON_0001969 denotes Plasma
T55 2485-2488 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T56 2485-2488 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T57 2619-2624 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T58 2619-2624 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T59 2673-2683 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T60 2738-2743 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T61 2738-2743 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T62 2910-2915 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T63 2910-2915 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T64 2940-2941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 3025-3030 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T66 3025-3030 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T67 3116-3121 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T68 3116-3121 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T69 3234-3239 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T70 3234-3239 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T71 3325-3330 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T72 3325-3330 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T73 3356-3362 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T74 3471-3476 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T75 3471-3476 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T76 3487-3488 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T77 3598-3603 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T78 3598-3603 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T79 3685-3690 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T80 3685-3690 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T81 4123-4128 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T82 4123-4128 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T83 4170-4173 http://www.ebi.ac.uk/efo/EFO_0000302 denotes CNS
T84 4170-4173 http://www.ebi.ac.uk/efo/EFO_0000908 denotes CNS
T85 4174-4180 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T86 4215-4224 http://purl.obolibrary.org/obo/CL_0000129 denotes microglia
T87 4265-4270 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T88 4265-4270 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T89 4288-4298 http://purl.obolibrary.org/obo/CL_0000127 denotes astrocytes
T90 4552-4562 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T91 4585-4590 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T92 4795-4803 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T93 4830-4831 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 4913-4923 http://purl.obolibrary.org/obo/CL_0000127 denotes astrocytes
T95 4959-4960 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 5010-5020 http://purl.obolibrary.org/obo/CL_0000127 denotes astrocytes
T97 5176-5185 http://purl.obolibrary.org/obo/CL_0000129 denotes microglia
T98 5332-5337 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T99 5338-5348 http://purl.obolibrary.org/obo/CL_0000127 denotes astrocytes
T100 5350-5359 http://purl.obolibrary.org/obo/CL_0000129 denotes microglia
T101 5498-5503 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T102 5498-5503 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T103 5504-5514 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T104 5586-5595 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T105 5796-5806 http://purl.obolibrary.org/obo/CL_0000127 denotes astrocytes
T106 5961-5962 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 6158-6163 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T108 6316-6317 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 6361-6364 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T110 6511-6518 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T77414 540-544 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T35911 545-549 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T93114 637-651 Chemical denotes opioid agonist http://purl.obolibrary.org/obo/CHEBI_60606
T82 644-651 Chemical denotes agonist http://purl.obolibrary.org/obo/CHEBI_48705
T50219 653-666 Chemical denotes buprenorphine http://purl.obolibrary.org/obo/CHEBI_3216
T84 696-711 Chemical denotes cytochrome P450 http://purl.obolibrary.org/obo/CHEBI_38559
T97276 696-706 Chemical denotes cytochrome http://purl.obolibrary.org/obo/CHEBI_4056
T22765 713-716 Chemical denotes CYP http://purl.obolibrary.org/obo/CHEBI_38559
T14085 736-749 Chemical denotes buprenorphine http://purl.obolibrary.org/obo/CHEBI_3216
T55445 765-775 Chemical denotes metabolite http://purl.obolibrary.org/obo/CHEBI_25212
T52742 817-820 Chemical denotes UDP http://purl.obolibrary.org/obo/CHEBI_17659|http://purl.obolibrary.org/obo/CHEBI_58223
T91 1006-1024 Chemical denotes protease inhibitor http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T93 1015-1024 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T84290 1038-1048 Chemical denotes atazanavir http://purl.obolibrary.org/obo/CHEBI_37924
T94858 1049-1058 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T64009 1069-1072 Chemical denotes CYP http://purl.obolibrary.org/obo/CHEBI_38559
T31065 1143-1156 Chemical denotes buprenorphine http://purl.obolibrary.org/obo/CHEBI_3216
T66339 1323-1336 Chemical denotes buprenorphine http://purl.obolibrary.org/obo/CHEBI_3216
T71773 1382-1392 Chemical denotes atazanavir http://purl.obolibrary.org/obo/CHEBI_37924
T59554 1510-1513 Chemical denotes CYP http://purl.obolibrary.org/obo/CHEBI_38559
T96679 1602-1611 Chemical denotes methadone http://purl.obolibrary.org/obo/CHEBI_6807
T13987 1616-1635 Chemical denotes protease inhibitors http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T71378 1625-1635 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T12801 1783-1792 Chemical denotes efavirenz http://purl.obolibrary.org/obo/CHEBI_119486
T21399 1797-1807 Chemical denotes nevirapine http://purl.obolibrary.org/obo/CHEBI_63613
T63149 1815-1818 Chemical denotes CYP http://purl.obolibrary.org/obo/CHEBI_38559
T42314 1874-1883 Chemical denotes methadone http://purl.obolibrary.org/obo/CHEBI_6807
T83783 1973-1982 Chemical denotes methadone http://purl.obolibrary.org/obo/CHEBI_6807
T110 2017-2026 Chemical denotes efavirenz http://purl.obolibrary.org/obo/CHEBI_119486
T76240 2030-2040 Chemical denotes nevirapine http://purl.obolibrary.org/obo/CHEBI_63613
T112 2128-2137 Chemical denotes Oxycodone http://purl.obolibrary.org/obo/CHEBI_7852
T10495 2165-2184 Chemical denotes lopinavir/ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T70158 2165-2174 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T42172 2175-2184 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T41667 2197-2206 Chemical denotes oxycodone http://purl.obolibrary.org/obo/CHEBI_7852
T51574 2251-2255 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T68581 2380-2385 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T94849 2489-2493 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T61019 2531-2535 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T121 2580-2584 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T51878 2650-2655 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T55237 2959-2963 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T22828 2964-2974 Chemical denotes amprenavir http://purl.obolibrary.org/obo/CHEBI_40050
T81667 3000-3010 Chemical denotes amprenavir http://purl.obolibrary.org/obo/CHEBI_40050
T37855 3229-3233 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T15495 3567-3571 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T47874 3669-3677 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T35335 3707-3719 Chemical denotes dolutegravir http://purl.obolibrary.org/obo/CHEBI_76010
T1635 3721-3731 Chemical denotes lamivudine http://purl.obolibrary.org/obo/CHEBI_63577
T51586 3736-3744 Chemical denotes abacavir http://purl.obolibrary.org/obo/CHEBI_421707
T133 3768-3776 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T135 3864-3869 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T25577 3953-3965 Chemical denotes dolutegravir http://purl.obolibrary.org/obo/CHEBI_76010
T137 3970-3978 Chemical denotes abacavir http://purl.obolibrary.org/obo/CHEBI_421707
T2314 4023-4027 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T98558 4045-4052 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T45522 4083-4091 Chemical denotes Morphine http://purl.obolibrary.org/obo/CHEBI_17303
T60669 4181-4186 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T25269 4496-4501 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T54061 4627-4637 Chemical denotes nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T71638 4638-4670 Chemical denotes reverse transcriptase inhibitors http://purl.obolibrary.org/obo/CHEBI_53756|http://purl.obolibrary.org/obo/CHEBI_59897
T38912 4646-4670 Chemical denotes transcriptase inhibitors http://purl.obolibrary.org/obo/CHEBI_37416
T147 4660-4670 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T31350 4687-4697 Chemical denotes nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T149 4698-4730 Chemical denotes reverse transcriptase inhibitors http://purl.obolibrary.org/obo/CHEBI_53756|http://purl.obolibrary.org/obo/CHEBI_59897
T20701 4706-4730 Chemical denotes transcriptase inhibitors http://purl.obolibrary.org/obo/CHEBI_37416
T94314 4720-4730 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T20334 4836-4841 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T8519 5057-5066 Chemical denotes darunavir http://purl.obolibrary.org/obo/CHEBI_367163
T1783 5071-5082 Chemical denotes raltegravir http://purl.obolibrary.org/obo/CHEBI_82960
T11420 5279-5291 Chemical denotes dolutegravir http://purl.obolibrary.org/obo/CHEBI_76010
T157 5293-5302 Chemical denotes tenofovir http://purl.obolibrary.org/obo/CHEBI_134504|http://purl.obolibrary.org/obo/CHEBI_63625|http://purl.obolibrary.org/obo/CHEBI_63716
T41404 5307-5320 Chemical denotes emtricitabine http://purl.obolibrary.org/obo/CHEBI_31536
T85995 5605-5614 Chemical denotes tenofovir http://purl.obolibrary.org/obo/CHEBI_134504|http://purl.obolibrary.org/obo/CHEBI_63625|http://purl.obolibrary.org/obo/CHEBI_63716
T97760 5691-5699 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T53034 5821-5829 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T72635 5887-5892 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T51837 5952-5957 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T75569 6048-6056 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T74415 6112-6120 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T27245 6410-6418 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T2343 6534-6542 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097
T65582 6595-6603 Chemical denotes morphine http://purl.obolibrary.org/obo/CHEBI_17303|http://purl.obolibrary.org/obo/CHEBI_58097

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3595 696-729 Gene denotes cytochrome P450 (CYP) 3A4 and 2C8 Gene:1576
3596 817-854 Gene denotes UDP-glucuronosyltransferase (UGT) 1A1 Gene:54658
3597 1069-1076 Gene denotes CYP 3A4 Gene:1576
3598 1081-1088 Gene denotes UGT 1A1 Gene:54658
3599 1510-1517 Gene denotes CYP 3A4 Gene:1576
3600 1815-1822 Gene denotes CYP 3A4 Gene:1576
3601 653-666 Chemical denotes buprenorphine MESH:D002047
3602 736-749 Chemical denotes buprenorphine MESH:D002047
3603 777-793 Chemical denotes norbuprenorphine MESH:C043585
3604 1038-1048 Chemical denotes atazanavir MESH:D000069446
3605 1049-1058 Chemical denotes ritonavir MESH:D019438
3606 1143-1156 Chemical denotes buprenorphine MESH:D002047
3607 1161-1177 Chemical denotes norbuprenorphine MESH:C043585
3608 1323-1336 Chemical denotes buprenorphine MESH:D002047
3609 1382-1392 Chemical denotes atazanavir MESH:D000069446
3610 1429-1438 Chemical denotes Methadone MESH:D008691
3611 1602-1611 Chemical denotes methadone MESH:D008691
3612 1783-1792 Chemical denotes efavirenz MESH:C098320
3613 1797-1807 Chemical denotes nevirapine MESH:D019829
3614 1874-1883 Chemical denotes methadone MESH:D008691
3615 1973-1982 Chemical denotes methadone MESH:D008691
3616 2017-2026 Chemical denotes efavirenz MESH:C098320
3617 2030-2040 Chemical denotes nevirapine MESH:D019829
3618 2128-2137 Chemical denotes Oxycodone MESH:D010098
3619 2165-2184 Chemical denotes lopinavir/ritonavir MESH:C558899
3620 2197-2206 Chemical denotes oxycodone MESH:D010098
3621 583-587 Disease denotes ARVs
3622 890-894 Disease denotes ARVs
3623 1907-1933 Disease denotes opioid withdrawal symptoms MESH:D013375
3635 2705-2709 Gene denotes P-gp Gene:5243
3636 2576-2579 Gene denotes CSF Gene:3918
3637 2712-2715 Gene denotes CSF Gene:3918
3638 3263-3266 Gene denotes CSF Gene:3918
3639 3140-3143 Gene denotes CSF Gene:3918
3640 3014-3017 Gene denotes CSF Gene:3918
3641 2916-2919 Gene denotes CSF Gene:3918
3642 2562-2565 Gene denotes CSF Gene:3918
3643 2964-2974 Chemical denotes amprenavir MESH:C095108
3644 2994-3010 Chemical denotes [14C]-amprenavir
3645 3433-3437 Disease denotes ARVs
3656 4054-4058 Gene denotes P-gp Gene:5243
3657 4107-4111 Gene denotes P-gp Gene:5243
3658 3669-3677 Chemical denotes morphine MESH:D009020
3659 3707-3719 Chemical denotes dolutegravir MESH:C562325
3660 3721-3731 Chemical denotes lamivudine MESH:D019259
3661 3736-3744 Chemical denotes abacavir MESH:C106538
3662 3768-3776 Chemical denotes morphine MESH:D009020
3663 3953-3965 Chemical denotes dolutegravir MESH:C562325
3664 3970-3978 Chemical denotes abacavir MESH:C106538
3665 4083-4091 Chemical denotes Morphine MESH:D009020
3671 4188-4191 Species denotes HIV Tax:12721
3672 5057-5066 Chemical denotes darunavir MESH:D000069454
3673 5071-5082 Chemical denotes raltegravir MESH:D000068898
3674 4326-4334 Disease denotes infected MESH:D007239
3675 4447-4456 Disease denotes infection MESH:D007239
3684 5332-5337 Species denotes human Tax:9606
3685 5279-5291 Chemical denotes dolutegravir MESH:C562325
3686 5293-5302 Chemical denotes tenofovir MESH:D000068698
3687 5307-5320 Chemical denotes emtricitabine MESH:D000068679
3701 6361-6364 Gene denotes CD4 Gene:920
3702 6048-6056 Chemical denotes morphine MESH:D009020
3703 6112-6120 Chemical denotes morphine MESH:D009020
3704 6410-6418 Chemical denotes morphine MESH:D009020
3705 6534-6542 Chemical denotes morphine MESH:D009020
3706 6595-6603 Chemical denotes morphine MESH:D009020
3707 6687-6695 Chemical denotes morphine MESH:D009020
3708 6034-6046 Disease denotes SIV-infected MESH:D012857
3709 6192-6205 Disease denotes SIV infection MESH:D012857

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T20 696-706 http://purl.obolibrary.org/obo/GO_0045158 denotes cytochrome
T21 696-706 http://purl.obolibrary.org/obo/GO_0045157 denotes cytochrome
T22 696-706 http://purl.obolibrary.org/obo/GO_0045156 denotes cytochrome
T23 696-706 http://purl.obolibrary.org/obo/GO_0008121 denotes cytochrome
T24 1265-1274 http://purl.obolibrary.org/obo/GO_0050890 denotes cognition
T25 2138-2148 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T26 2666-2672 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T27 2666-2672 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T28 4009-4015 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T29 4009-4015 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T30 4028-4034 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T31 4028-4034 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T32 4035-4044 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T33 4646-4659 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T34 4646-4659 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T35 4706-4719 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T36 4706-4719 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T37 4759-4787 http://purl.obolibrary.org/obo/GO_1903901 denotes inhibiting viral replication
T38 4770-4787 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T39 4770-4787 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T40 4880-4905 http://purl.obolibrary.org/obo/GO_1903901 denotes inhibit viral replication
T41 4888-4905 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T42 4888-4905 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1322 0-71 Sentence denotes Opioid Effects on Antiretroviral Efficacy within the CNS and Vice Versa
T1323 72-145 Sentence denotes Opioid misuse has been linked to poor adherence to cART (Jeevanjee et al.
T1324 146-152 Sentence denotes 2014).
T1325 153-257 Sentence denotes However, adherence to ARV therapy improves after initiation of opioid substitution therapy (Nosyk et al.
T1326 258-274 Sentence denotes 2015; Low et al.
T1327 275-293 Sentence denotes 2016; Adams et al.
T1328 294-300 Sentence denotes 2020).
T1329 301-515 Sentence denotes Although better adherence can improve therapeutic outcomes in PWH, little information is currently available on the interaction between opioids or opioid substitution therapies and cART specifically within the CNS.
T1330 516-624 Sentence denotes There are several known drug-drug interactions between opioids and ARVs that affect systemic concentrations.
T1331 625-730 Sentence denotes The partial opioid agonist, buprenorphine, is metabolized primarily by cytochrome P450 (CYP) 3A4 and 2C8.
T1332 731-881 Sentence denotes Both buprenorphine and its active metabolite, norbuprenorphine, are glucuronidated by UDP-glucuronosyltransferase (UGT) 1A1 and then excreted in bile.
T1333 882-938 Sentence denotes Several ARVs inhibit or induce these metabolic pathways.
T1334 939-993 Sentence denotes However, not all interactions are clinically relevant.
T1335 994-1295 Sentence denotes The boosted protease inhibitor combination, atazanavir/ritonavir, inhibits CYP 3A4 and UGT 1A1, leading to increases in overall systemic exposure of buprenorphine and norbuprenorphine and also results in symptoms of opioid excess, such as increased sedation and impaired cognition (McCance-Katz et al.
T1336 1296-1302 Sentence denotes 2007).
T1337 1303-1428 Sentence denotes Dose adjustments of buprenorphine are recommended when initiating therapy with atazanavir to avoid symptoms of opioid excess.
T1338 1429-1543 Sentence denotes Methadone is a full opioid substrate with multiple metabolic pathways, including CYP 3A4, 2B6, 2C19, 2C9, and 2D6.
T1339 1544-1636 Sentence denotes Several pharmacokinetic interactions are reported between methadone and protease inhibitors.
T1340 1637-1741 Sentence denotes However, withdrawal symptoms are rare, and therefore, dose adjustments are not recommended (Bruce et al.
T1341 1742-1762 Sentence denotes 2006; Meemken et al.
T1342 1763-1769 Sentence denotes 2015).
T1343 1770-1934 Sentence denotes In contrast, efavirenz and nevirapine induce CYP 3A4, resulting in decreased systemic concentrations of methadone and the development of opioid withdrawal symptoms.
T1344 1935-2079 Sentence denotes To avoid opioid withdrawal, increased methadone dosing is recommended when either efavirenz or nevirapine therapy is initiated (Marzolini et al.
T1345 2080-2099 Sentence denotes 2000; Clarke et al.
T1346 2100-2120 Sentence denotes 2001; Meemken et al.
T1347 2121-2127 Sentence denotes 2015).
T1348 2128-2280 Sentence denotes Oxycodone metabolism is inhibited by lopinavir/ritonavir, increasing oxycodone concentrations as well as the self-reported drug effects (Nieminen et al.
T1349 2281-2298 Sentence denotes 2010; Feng et al.
T1350 2299-2305 Sentence denotes 2017).
T1351 2306-2386 Sentence denotes The pharmacokinetic studies above focused on overall systemic exposure of drugs.
T1352 2387-2473 Sentence denotes Plasma concentrations, however, are not always accurate indicators of tissue exposure.
T1353 2474-2566 Sentence denotes Similarly, CNS drug exposure is often estimated based on drug concentrations within the CSF.
T1354 2567-2640 Sentence denotes However, CSF drug levels may not accurately predict brain concentrations.
T1355 2641-2777 Sentence denotes For many drugs with high efflux activities (e.g., substrates of P-gp), CSF tends to over-predict brain tissue concentrations (Liu et al.
T1356 2778-2797 Sentence denotes 2006; Friden et al.
T1357 2798-2818 Sentence denotes 2009; Kodaira et al.
T1358 2819-2831 Sentence denotes 2011, 2014).
T1359 2832-2936 Sentence denotes This could be due, in part, to differential expression of transporters at the blood-CSF barrier vs. BBB.
T1360 2937-3157 Sentence denotes In a study of the ARV drug amprenavir, concentrations of [14C]-amprenavir in CSF versus brain were 23.3 ± 11.2 and 3.33 ± 0.6 nCi/g, respectively, demonstrating overprediction of brain concentrations by CSF (Polli et al.
T1361 3158-3164 Sentence denotes 1999).
T1362 3165-3291 Sentence denotes These studies illustrate the high likelihood of misinterpreting drug brain penetration when using CSF as the surrogate marker.
T1363 3292-3486 Sentence denotes Therefore, direct measurement of brain tissue concentrations in animal models are likely to be more predictive of the interactive effects of ARVs and opioids on ARV and/or opioid brain exposure.
T1364 3487-3604 Sentence denotes A few studies have investigated the impact of opioids and ARV administration on drug concentrations within the brain.
T1365 3605-3886 Sentence denotes One study investigated the impact of 5 d continuous exposure to morphine on ARV brain concentrations (dolutegravir, lamivudine and abacavir) and demonstrated that morphine exposure resulted in regionally specific decreases in the concentrations of select ARV drugs (Leibrand et al.
T1366 3887-4075 Sentence denotes 2019) and, furthermore, that the decreases in ARV concentrations (dolutegravir and abacavir) were likely due to increased efflux by the drug efflux transport protein, P-gp (Leibrand et al.
T1367 4076-4082 Sentence denotes 2019).
T1368 4083-4187 Sentence denotes Morphine alterations in P-gp within the brain could have wide reaching impact on other CNS active drugs.
T1369 4188-4358 Sentence denotes HIV preferentially infects microglia and perivascular macrophages within the brain, although BMECs, astrocytes, and pericytes can also be infected (Kramer-Hammerle et al.
T1370 4359-4365 Sentence denotes 2005).
T1371 4366-4457 Sentence denotes Achieving optimal intracellular ARV concentrations are essential to suppress the infection.
T1372 4458-4617 Sentence denotes Few studies have examined whether ARV drugs differentially accumulate within different neural cell types and especially within cells of the neurovascular unit.
T1373 4618-4936 Sentence denotes Although nucleoside reverse transcriptase inhibitors (NRTIs) and non-nucleoside reverse transcriptase inhibitors (NNRTIs) are efficacious in inhibiting viral replication within monocyte-derived macrophages, only a few drugs within each ARV class can effectively inhibit viral replication within astrocytes (Gray et al.
T1374 4937-5021 Sentence denotes 2013), which could be a result of poor intracellular accumulation within astrocytes.
T1375 5022-5216 Sentence denotes In vitro studies have demonstrated darunavir and raltegravir intracellular concentrations to be approximately 100-fold lower (with higher EC50 values) in microglia than in PBMCs (Asahchop et al.
T1376 5217-5223 Sentence denotes 2017).
T1377 5224-5394 Sentence denotes Another study measured intracellular concentrations of dolutegravir, tenofovir and emtricitabine in primary human astrocytes, microglia, pericytes and BMECs (Patel et al.
T1378 5395-5401 Sentence denotes 2019).
T1379 5402-5515 Sentence denotes Intracellular ARV concentrations were typically significantly higher in BMECs than in the other brain cell types.
T1380 5516-5650 Sentence denotes Dolutegravir achieved the highest relative concentrations within each cell type, whereas tenofovir accumulated the least (Patel et al.
T1381 5651-5657 Sentence denotes 2019).
T1382 5658-5807 Sentence denotes Furthermore, 24 h treatment with morphine significantly decreased intracellular accumulation of composite ARV concentrations, but only in astrocytes.
T1383 5808-5927 Sentence denotes In contrast, morphine exposure significantly increased the net accumulation of drugs within BMECs compared to controls.
T1384 5928-5997 Sentence denotes BMECs may sequester ARV drugs as a protective mechanism (Patel et al.
T1385 5998-6004 Sentence denotes 2019).
T1386 6005-6283 Sentence denotes Using experimental data from SIV-infected, morphine-addicted macaques, mathematical modeling suggests that morphine exposure increases the proportion of cells with high susceptibility to SIV infection, at least in part, because of increased co-receptor expression (Vaidya et al.
T1387 6284-6290 Sentence denotes 2016).
T1388 6291-6557 Sentence denotes In addition to promoting a higher steady state viral loads and larger CD4 count declines, the model also predicts that morphine exposure results in the need for more efficacious ARV treatment than would be necessary for animals not exposed to morphine (Vaidya et al.
T1389 6558-6564 Sentence denotes 2016).
T1390 6565-6730 Sentence denotes Although the direct impact of morphine on ARV concentrations was not investigated, the study provides evidence supporting morphine’s negative impact on ARV efficacy.

2_test

Id Subject Object Predicate Lexical cue
32876803-24077929-62958376 146-150 24077929 denotes 2014
32876803-25915170-62958377 258-262 25915170 denotes 2015
32876803-27343545-62958378 275-279 27343545 denotes 2016
32876803-31711873-62958379 294-298 31711873 denotes 2020
32876803-17643869-62958380 1296-1300 17643869 denotes 2007
32876803-17109308-62958381 1742-1746 17109308 denotes 2006
32876803-25902733-62958382 1763-1767 25902733 denotes 2015
32876803-10894303-62958383 2080-2084 10894303 denotes 2000
32876803-11298066-62958384 2100-2104 11298066 denotes 2001
32876803-25902733-62958385 2121-2125 25902733 denotes 2015
32876803-20697700-62958386 2281-2285 20697700 denotes 2010
32876803-28579821-62958387 2299-2303 28579821 denotes 2017
32876803-16760229-62958388 2778-2782 16760229 denotes 2006
32876803-19764786-62958389 2798-2802 19764786 denotes 2009
32876803-24644297-62958390 2825-2829 24644297 denotes 2014
32876803-10468021-62958391 3158-3162 10468021 denotes 1999
32876803-15885841-62958392 4359-4363 15885841 denotes 2005
32876803-23614033-62958393 4937-4941 23614033 denotes 2013
32876803-29037245-62958394 5217-5221 29037245 denotes 2017
32876803-27668463-62958395 6284-6288 27668463 denotes 2016
32876803-27668463-62958396 6558-6562 27668463 denotes 2016