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PMC:7461420 / 19353-20038 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T109 254-259 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T110 303-314 Body_part denotes endothelium http://purl.org/sig/ont/fma/fma63916
T111 327-331 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T112 356-381 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T113 376-381 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T114 426-433 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T115 465-475 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T116 528-535 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T117 554-561 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T118 680-684 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 303-314 Body_part denotes endothelium http://purl.obolibrary.org/obo/UBERON_0001986
T7 327-331 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 680-684 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T105 20-24 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 67-71 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 96-100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 189-198 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T109 200-204 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T110 387-391 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 439-443 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 515-519 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 541-545 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T218 152-159 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T219 235-236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T220 254-259 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T221 267-270 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T222 303-314 http://purl.obolibrary.org/obo/UBERON_0001986 denotes endothelium
T223 327-331 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T224 327-331 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T225 365-375 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T226 376-381 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T227 405-415 http://purl.obolibrary.org/obo/CLO_0009900 denotes 76% of its
T228 459-460 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T229 603-605 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T230 680-684 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T231 680-684 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T148 426-433 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T149 465-475 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T150 465-470 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T151 471-475 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T152 528-535 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T153 554-561 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T18 647-656 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T19 647-656 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
617 227-231 Gene denotes ACE2 Gene:59272
618 416-421 Gene denotes spike Gene:43740568
619 423-424 Gene denotes S Gene:43740568
620 571-575 Gene denotes ACE2 Gene:59272
621 552-553 Gene denotes S Gene:43740568
622 20-30 Species denotes SARS‐CoV‐2 Tax:2697049
623 67-75 Species denotes SARS‐CoV Tax:694009
624 200-208 Species denotes SARS‐CoV Tax:694009
625 387-397 Species denotes SARS‐CoV‐2 Tax:2697049
626 439-447 Species denotes SARS‐CoV Tax:694009
627 515-523 Species denotes SARS‐CoV Tax:694009
628 541-551 Species denotes SARS‐CoV‐2 Tax:2697049
629 189-198 Disease denotes infection MESH:D007239

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T193 0-118 Sentence denotes The genetic code of SARS‐CoV‐2 shares noticeable similarities with SARS‐CoV‐1, which caused the SARS epidemic in 2002.
T194 119-199 Sentence denotes 26 , 54 More importantly, both viruses have identical mechanisms of infection.
T195 200-382 Sentence denotes SARS‐CoV‐1 uses the host's ACE2 as a portal to infect cells, which has high expression in the vascular endothelium 55 and the lung, particularly in type 2 alveolar epithelial cells.
T196 383-450 Sentence denotes 56 SARS‐CoV‐2 shares 76% of its spike (S) protein with SARS‐CoV‐1.
T197 451-685 Sentence denotes Despite a few amino acid differences in its RBD compared to the SARS‐CoV‐1 S protein, the SARS‐CoV‐2 S protein binds to ACE2 with even greater affinity 27 offering an explanation for its greater virulence and preference for the lung.