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PMC:7457008 / 1805-25727 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 6760-6763 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T2 9002-9007 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T3 9618-9626 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T4 12640-12648 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T5 13173-13177 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T6 13178-13181 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T7 13320-13323 Body_part denotes Eye http://purl.org/sig/ont/fma/fma54448
T8 13324-13328 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T9 13365-13369 Body_part denotes Hand http://purl.org/sig/ont/fma/fma9712
T10 13382-13386 Body_part denotes Body http://purl.org/sig/ont/fma/fma256135
T11 18988-18991 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T12 18992-18996 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T13 19211-19214 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T14 19356-19359 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T15 19360-19364 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T16 19742-19745 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T17 19746-19750 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T18 19861-19864 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T19 19865-19869 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T20 22293-22296 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T21 22297-22301 Body_part denotes face http://purl.org/sig/ont/fma/fma24728

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 6760-6763 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T2 9002-9007 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 9511-9516 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T4 13173-13177 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T5 13178-13181 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T6 13324-13328 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T7 13365-13369 Body_part denotes Hand http://purl.obolibrary.org/obo/UBERON_0002398
T8 14767-14772 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T9 18988-18991 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T10 18992-18996 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T11 19211-19214 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T12 19356-19359 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T13 19360-19364 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T14 19742-19745 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T15 19746-19750 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T16 19861-19864 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T17 19865-19869 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T18 22293-22296 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T19 22297-22301 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 43-51 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1966-1973 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T11 4965-4972 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T13 5724-5727 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T14 6120-6123 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T15 7163-7171 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 7220-7228 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 7515-7518 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T18 7574-7582 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 7656-7664 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 8501-8504 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T21 8824-8827 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T22 9419-9426 Disease denotes Anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T24 9459-9466 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T26 9583-9590 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T28 9714-9721 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T30 9772-9779 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T32 9922-9929 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T34 10056-10063 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T36 10097-10104 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T38 10269-10276 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T40 10550-10557 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T42 10679-10686 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T44 10735-10742 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T46 10872-10879 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T48 11057-11064 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T50 11265-11272 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T52 11387-11394 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T54 11469-11476 Disease denotes Anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T56 12192-12199 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T58 13895-13904 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T59 13973-13981 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 14608-14627 Disease denotes Ebola virus disease http://purl.obolibrary.org/obo/MONDO_0005737
T61 14894-14902 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 15065-15073 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 16026-16029 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T64 17332-17340 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 17548-17551 Disease denotes ST3 http://purl.obolibrary.org/obo/MONDO_0008614
T66 17818-17825 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T68 17932-17939 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T70 18053-18060 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T72 18290-18297 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T74 18340-18347 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T76 20524-20532 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 20963-20970 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T79 21000-21007 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T81 21156-21163 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T83 21753-21760 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T85 22023-22031 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 22527-22534 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T6 103-115 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T7 324-329 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 426-429 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 435-436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 542-543 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 634-637 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 645-646 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 656-661 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T14 1484-1485 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1744-1754 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectives
T16 2286-2287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2544-2545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2880-2881 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2991-2992 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3220-3223 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T21 3220-3223 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T22 3466-3472 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T23 3987-3990 http://purl.obolibrary.org/obo/CLO_0001608 denotes a 7
T24 4027-4029 http://purl.obolibrary.org/obo/CLO_0009141 denotes ST
T25 4027-4029 http://purl.obolibrary.org/obo/CLO_0050980 denotes ST
T26 4260-4261 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 4285-4286 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 4525-4526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4672-4676 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T30 4833-4838 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T31 4896-4900 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T32 5048-5052 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T33 5173-5175 http://purl.obolibrary.org/obo/CLO_0009877 denotes NY
T34 5315-5321 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T35 5333-5338 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T36 5418-5420 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T37 5700-5703 http://purl.obolibrary.org/obo/CLO_0051025 denotes ST2
T38 6490-6492 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T39 6500-6502 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T40 6554-6556 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T41 6760-6763 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T42 6929-6930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 7619-7621 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T44 7740-7742 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T45 7743-7751 http://purl.obolibrary.org/obo/CLO_0001006 denotes (31%) 1
T46 7761-7769 http://purl.obolibrary.org/obo/CLO_0001001 denotes (8%) 13
T47 7823-7832 http://purl.obolibrary.org/obo/CLO_0054057 denotes 1 (8%) 1
T48 7853-7862 http://purl.obolibrary.org/obo/CLO_0001053 denotes 1 (2%) 1
T49 8934-8936 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T50 9002-9007 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T51 9002-9007 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T52 9008-9013 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T53 9035-9037 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T54 9114-9116 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T55 9236-9244 http://purl.obolibrary.org/obo/CLO_0001001 denotes (8%) 13
T56 9303-9305 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T57 9377-9379 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T58 9383-9385 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T59 9509-9510 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 9671-9672 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 9746-9747 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 9818-9821 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3-5
T63 10041-10042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 10466-10467 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 10658-10659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 11229-11230 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 11862-11865 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2-2
T68 12156-12157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 12773-12774 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T70 12784-12786 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T71 13005-13007 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T72 13173-13177 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T73 13178-13181 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T74 13320-13323 http://www.ebi.ac.uk/efo/EFO_0000827 denotes Eye
T75 13324-13328 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T76 13474-13476 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T77 13494-13496 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T78 13587-13593 http://purl.obolibrary.org/obo/CLO_0007919 denotes n = 18
T79 13587-13593 http://purl.obolibrary.org/obo/CLO_0007920 denotes n = 18
T80 13614-13616 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T81 13620-13622 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T82 13761-13763 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T83 13765-13767 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T84 13782-13783 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 13999-14000 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 14013-14015 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T87 14279-14287 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T88 14385-14388 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T89 14575-14576 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 14614-14619 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T91 14756-14757 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 14826-14827 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 15115-15117 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T94 15145-15148 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T95 15158-15159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 15365-15366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 15568-15571 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAS
T98 15938-15940 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T99 16474-16475 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 16897-16902 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T101 17416-17417 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T102 17509-17511 http://purl.obolibrary.org/obo/CLO_0009141 denotes ST
T103 17509-17511 http://purl.obolibrary.org/obo/CLO_0050980 denotes ST
T104 17994-17995 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T105 18130-18131 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T106 18266-18267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 18611-18613 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T108 18822-18825 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T109 18862-18863 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 18988-18991 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T111 18992-18996 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T112 19211-19214 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T113 19273-19274 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 19356-19359 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T115 19360-19364 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T116 19465-19466 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 19520-19522 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T118 19742-19745 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T119 19746-19750 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T120 19861-19864 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T121 19865-19869 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T122 19940-19941 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T123 20314-20315 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 20620-20621 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 20889-20890 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 21137-21138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 21308-21309 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 21331-21332 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 21333-21339 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T130 21418-21424 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T131 22293-22296 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T132 22297-22301 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T133 22459-22460 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 22776-22777 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 462-472 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T4 711-721 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T5 2225-2228 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T6 2288-2293 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T7 2638-2648 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T8 2657-2662 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T9 3763-3766 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T10 4027-4029 Chemical denotes ST http://purl.obolibrary.org/obo/CHEBI_141393
T11 5173-5175 Chemical denotes NY http://purl.obolibrary.org/obo/CHEBI_73427
T12 5561-5566 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T13 5743-5748 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T14 5902-5907 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T15 6664-6674 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T16 8237-8242 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T17 8639-8644 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T18 12462-12465 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T19 13434-13437 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T20 13513-13515 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T21 15447-15457 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T22 15477-15487 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T23 16277-16279 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T24 16328-16330 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T25 17509-17511 Chemical denotes ST http://purl.obolibrary.org/obo/CHEBI_141393
T26 18573-18576 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T27 18706-18709 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T28 20383-20388 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T29 20438-20443 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 295-301 Species denotes people Tax:9606
25 473-483 Species denotes outpatient Tax:9606
26 787-795 Species denotes patients Tax:9606
27 53-72 Disease denotes coronavirus disease MESH:D018352
28 361-367 Disease denotes deaths MESH:D003643
29 409-417 Disease denotes COVID-19 MESH:C000657245
31 1966-1973 Disease denotes anxiety MESH:D001007
36 4072-4075 Gene denotes ST7 Gene:7982
37 4056-4059 Gene denotes ST1 Gene:6386
38 3649-3668 Disease denotes Coronavirus disease MESH:D018352
39 4475-4484 Disease denotes anxieties MESH:D001007
41 4965-4972 Disease denotes anxiety MESH:D001007
43 5333-5338 Species denotes human Tax:9606
47 5700-5703 Gene denotes ST2 Gene:6761
48 5724-5727 Gene denotes ST3 Gene:6762
49 5694-5697 Gene denotes ST1 Gene:6386
52 6105-6110 Gene denotes ST1-2 Gene:1316
53 6120-6123 Gene denotes ST3 Gene:6762
58 7128-7136 Species denotes patients Tax:9606
59 7142-7161 Disease denotes Coronavirus disease MESH:D018352
60 7163-7171 Disease denotes COVID-19 MESH:C000657245
61 7220-7228 Disease denotes COVID-19 MESH:C000657245
64 7574-7582 Disease denotes COVID-19 MESH:C000657245
65 7656-7664 Disease denotes COVID-19 MESH:C000657245
73 8231-8236 Gene denotes ST1-2 Gene:1316
74 8633-8638 Gene denotes ST1-2 Gene:1316
75 8483-8488 Gene denotes ST1-2 Gene:1316
76 8501-8504 Gene denotes ST3 Gene:6762
77 8371-8379 Species denotes patients Tax:9606
78 8473-8481 Species denotes patients Tax:9606
79 8563-8571 Species denotes patients Tax:9606
81 8911-8919 Species denotes patients Tax:9606
83 9419-9426 Disease denotes Anxiety MESH:D001007
90 9540-9551 Species denotes participant Tax:9606
91 9459-9466 Disease denotes anxiety MESH:D001007
92 9583-9590 Disease denotes anxiety MESH:D001007
93 9714-9721 Disease denotes anxiety MESH:D001007
94 9772-9779 Disease denotes anxiety MESH:D001007
95 9922-9929 Disease denotes anxiety MESH:D001007
100 10025-10031 Species denotes people Tax:9606
101 10056-10063 Disease denotes anxiety MESH:D001007
102 10097-10104 Disease denotes anxiety MESH:D001007
103 10269-10276 Disease denotes anxiety MESH:D001007
105 10550-10557 Disease denotes anxiety MESH:D001007
108 10679-10686 Disease denotes anxiety MESH:D001007
109 10735-10742 Disease denotes anxiety MESH:D001007
111 10872-10879 Disease denotes anxiety MESH:D001007
114 11057-11064 Disease denotes anxiety MESH:D001007
115 11265-11272 Disease denotes anxiety MESH:D001007
117 11469-11476 Disease denotes Anxiety MESH:D001007
119 11387-11394 Disease denotes anxiety MESH:D001007
121 12192-12199 Disease denotes anxiety MESH:D001007
123 12524-12543 Disease denotes Coronavirus disease MESH:D018352
126 13207-13215 Species denotes patients Tax:9606
127 13224-13243 Disease denotes Coronovirus disease MESH:D003141
130 13439-13444 Disease denotes COVID MESH:C000657245
131 13654-13659 Disease denotes COVID MESH:C000657245
137 13784-13801 Species denotes novel coronavirus Tax:2697049
138 14340-14348 Species denotes patients Tax:9606
139 13895-13904 Disease denotes pneumonia MESH:D011014
140 13973-13981 Disease denotes COVID-19 MESH:C000657245
141 14354-14373 Disease denotes Coronavirus disease MESH:D018352
146 14568-14571 Gene denotes aid Gene:57379
147 14614-14627 Disease denotes virus disease MESH:D001102
148 14894-14902 Disease denotes COVID-19 MESH:C000657245
149 15065-15073 Disease denotes COVID-19 MESH:C000657245
162 17509-17515 Gene denotes ST 1-2 Gene:1316
163 16026-16029 Gene denotes ST3 Gene:6762
164 17548-17551 Gene denotes ST3 Gene:6762
165 16138-16146 Species denotes patients Tax:9606
166 16384-16392 Species denotes patients Tax:9606
167 16756-16764 Species denotes patients Tax:9606
168 16851-16859 Species denotes patients Tax:9606
169 17168-17176 Species denotes patients Tax:9606
170 17580-17588 Species denotes patients Tax:9606
171 15879-15898 Disease denotes Coronavirus disease MESH:D018352
172 16118-16137 Disease denotes Coronavirus disease MESH:D018352
173 17332-17340 Disease denotes COVID-19 MESH:C000657245
179 17818-17825 Disease denotes anxiety MESH:D001007
180 17932-17939 Disease denotes anxiety MESH:D001007
181 18053-18060 Disease denotes anxiety MESH:D001007
182 18290-18297 Disease denotes anxiety MESH:D001007
183 18340-18347 Disease denotes anxiety MESH:D001007
188 19042-19050 Species denotes patients Tax:9606
189 18957-18973 Disease denotes PPE deficiencies MESH:D007153
190 19022-19041 Disease denotes Coronavirus disease MESH:D018352
191 19884-19889 Disease denotes COVID MESH:C000657245
200 20432-20437 Gene denotes ST1-2 Gene:1316
201 21837-21845 Species denotes patients Tax:9606
202 20524-20532 Disease denotes COVID-19 MESH:C000657245
203 20963-20970 Disease denotes anxiety MESH:D001007
204 21000-21007 Disease denotes anxiety MESH:D001007
205 21156-21163 Disease denotes anxiety MESH:D001007
206 21643-21652 Disease denotes anxieties MESH:D001007
207 21753-21760 Disease denotes anxiety MESH:D001007
212 22347-22355 Species denotes patients Tax:9606
213 22023-22031 Disease denotes COVID-19 MESH:C000657245
214 22327-22346 Disease denotes Coronavirus disease MESH:D018352
215 22527-22534 Disease denotes anxiety MESH:D001007

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 1966-1973 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T5 4965-4972 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T6 9419-9426 Phenotype denotes Anxiety http://purl.obolibrary.org/obo/HP_0000739
T7 9459-9466 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T8 9583-9590 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T9 9714-9721 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T10 9772-9779 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T11 9922-9929 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T12 10056-10063 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T13 10097-10104 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T14 10269-10276 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T15 10550-10557 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T16 10679-10686 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T17 10735-10742 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T18 10872-10879 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T19 11057-11064 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T20 11265-11272 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T21 11387-11394 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T22 11469-11476 Phenotype denotes Anxiety http://purl.obolibrary.org/obo/HP_0000739
T23 12192-12199 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T24 13895-13904 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 17818-17825 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T26 17932-17939 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T27 18053-18060 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T28 18290-18297 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T29 18340-18347 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T30 20963-20970 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T31 21000-21007 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T32 21156-21163 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T33 21753-21760 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T34 22527-22534 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739

MyTest

Id Subject Object Predicate Lexical cue
32854520-12803354-29206381 2422-2424 12803354 denotes 6
32854520-32007143-29206382 13957-13959 32007143 denotes 8
32854520-32287087-29206383 14966-14969 32287087 denotes 10
32854520-32346110-29206384 17904-17906 32346110 denotes 13

0_colil

Id Subject Object Predicate Lexical cue
32854520-12803354-15337 2422-2423 12803354 denotes 6
32854520-32007143-15338 13957-13958 32007143 denotes 8
32854520-32287087-15339 14966-14968 32287087 denotes 10
32854520-32346110-15340 17904-17906 32346110 denotes 13

TEST0

Id Subject Object Predicate Lexical cue
32854520-182-187-15337 2422-2423 ["12803354"] denotes 6
32854520-175-180-15338 13957-13958 ["32007143"] denotes 8
32854520-160-166-15339 14966-14968 ["32287087"] denotes 10
32854520-91-97-15340 17904-17906 ["32346110"] denotes 13

2_test

Id Subject Object Predicate Lexical cue
32854520-12803354-29206381 2422-2423 12803354 denotes 6
32854520-32007143-29206382 13957-13958 32007143 denotes 8
32854520-32287087-29206383 14966-14968 32287087 denotes 10
32854520-32346110-29206384 17904-17906 32346110 denotes 13

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-12 Sentence denotes Introduction
T20 13-245 Sentence denotes Since the announcement of the COVID-19 (coronavirus disease) pandemic by the World Health Organization (WHO), there have been dramatic changes to service provision across the National Health Service (NHS) in the United Kingdom (UK).
T21 246-1040 Sentence denotes As of 4th May 2020, there have been over 150,000 people confirmed to have the virus in the UK of which over 28,000 deaths have been attributed alone or in part to COVID-19.1 There has been a significant reduction in ophthalmic outpatient attendance, diagnostic procedures and elective surgery as a direct effect from the lockdown and social distancing guidance from the government.2 This has caused a shift in focus to emergency presentations and reorganization of ophthalmic services.3 In its strategy to deal with the increasing influx of patients to acute medical care services, NHS England issued advice to doctors across all specialties on redeployment, specifically advising where and what roles they should undertake to help ease pressure from outstretched services during the pandemic.4
T22 1041-1391 Sentence denotes The Academy of Medical Royal Colleges further provided guidance in March 2020 outlining the importance of ensuring the training, competency and supervision of doctors before deployment outside their usual specialty or areas of expertise.5 It emphasized the advice that no doctor should undertake any duty that they do not feel comfortable to perform.
T23 1392-1459 Sentence denotes For many ophthalmologists, redeployment was an unprecedented event.
T24 1460-1718 Sentence denotes Therefore, we performed a survey open to all grades of ophthalmologists across the UK, irrespective of whether they were redeployed or not, to evaluate the processes, capture the experience and identify both the positive and negative aspects of redeployment.
T25 1719-1755 Sentence denotes The survey had four main objectives:
T26 1756-1838 Sentence denotes To identify the proportion of each grade of ophthalmologists that were redeployed.
T27 1839-1936 Sentence denotes To recognize the medical and non-medical tasks performed by ophthalmologists during redeployment.
T28 1937-2057 Sentence denotes To demonstrate the levels of anxiety in doctors before and after redeployment and identify the factors influencing this.
T29 2058-2230 Sentence denotes To evaluate if the appropriate personal protective equipment (PPE) was provided for their respective redeployed place of work as recommended by Public Health England (PHE).
T30 2232-2239 Sentence denotes Methods
T31 2240-2726 Sentence denotes An online prospective survey was developed by a group of ophthalmologists across the authors’ trusts to collect data on redeployment based on established literature on good practice.6 The study was conducted with non-random sampling distributed to ophthalmologists across the country of all grades using a multitude of methods including email of established networks, social media, and through the ophthalmic trainee group representatives at the Royal College of Ophthalmologists (RCO).
T32 2727-2823 Sentence denotes The survey was open to all ophthalmologists irrespective of whether they were redeployed or not.
T33 2824-3038 Sentence denotes The respondents who responded as deployed were taken to a set of questions regarding their redeployment while those that reported that they were not deployed answered a shorter survey regarding future redeployment.
T34 3039-3189 Sentence denotes Not all responses were completed fully and although these were included in our study, only the answers they completed were considered in the analysis.
T35 3190-3349 Sentence denotes Responses were collected over a 2-week period between the 17th April 2020 and 1st May 2020 and the questionnaire was designed to be short and easy to complete.
T36 3350-3473 Sentence denotes The survey was collected using an online provider who was able to prevent reduplication of the survey from the same device.
T37 3474-3727 Sentence denotes Content was based around the NHS England guidance on “Redeployment of secondary care medical force safely.”4 The questions were designed to identify the impact of the current Coronavirus disease related redeployment on ophthalmologists to areas of need.
T38 3728-3876 Sentence denotes Some of the questions assessed the PHE guidance issued on the 9th April 2020 on appropriate use of PPE for healthcare workers in different settings.
T39 3877-3941 Sentence denotes We collected the responses according to their respective grades.
T40 3942-4077 Sentence denotes In the UK, ophthalmology training is usually a 7-year process of specialty training (ST) progressing from year 1 (ST1) to year 7 (ST7).
T41 4078-4216 Sentence denotes Responses from ophthalmology consultants, staff grades, associate specialists, specialty doctors and clinical fellows were also collected.
T42 4217-4385 Sentence denotes Prior to survey distribution, we conducted a pilot questionnaire on a sample of ophthalmologists to ensure that it was quick and relevant for the purposes of our study.
T43 4386-4516 Sentence denotes We also used some Likert-type questions to gain information from respondents about their anxieties before and during redeployment.
T44 4517-4625 Sentence denotes This is a well-established method of collating information for surveys in healthcare and medical education.7
T45 4626-4719 Sentence denotes The data were assessed using the Shapiro–Wilk test, and found to be non-normally distributed.
T46 4720-4809 Sentence denotes Hence, data are primarily reported as medians and interquartile ranges (IQRs) throughout.
T47 4810-4939 Sentence denotes We used Mann–Whitney U tests for continuous and ordinal variables, and Fisher’s exact test and Chi-Squared for nominal variables.
T48 4940-5053 Sentence denotes Pre- and post-deployment anxiety levels were paired for responses and compared using Wilcoxon’s signed rank test.
T49 5054-5102 Sentence denotes Analyses were performed using STATA® (StataCorp.
T50 5103-5177 Sentence denotes 2015) and SPSS Statistics for Windows, Version 25.0 (IBM Corp, Armonk NY).
T51 5178-5227 Sentence denotes Statistical significance was defined as p < 0.05.
T52 5228-5348 Sentence denotes This survey did not require ethics committee approval as it does not contain data from animal studies or human subjects.
T53 5350-5357 Sentence denotes Results
T54 5358-5472 Sentence denotes In total, 145 surveys were returned and of these responses, 52% of respondents reported that they were redeployed.
T55 5473-5588 Sentence denotes The respondents were categorized into four groups and the basic characteristics of each group are shown in Table 1.
T56 5589-5738 Sentence denotes The trainee ophthalmologists were categorized to those with more recent experience of medical training, (ST1 & ST2 level) and those in ST3 and above.
T57 5739-5891 Sentence denotes The group “Other” consisted of non-consultant career grade doctors such as staff grades, associate specialists, specialty doctors, and clinical fellows.
T58 5892-6006 Sentence denotes The final group consisted of ophthalmology consultants irrespective of whether they were substantive or part time.
T59 6007-6015 Sentence denotes Table 1.
T60 6017-6080 Sentence denotes Location of redeployment across all grades of ophthalmologists.
T61 6081-6161 Sentence denotes All grades Consultant ST1-2 trainee ST3+ trainee Other (staff grade, fellow)
T62 6162-6233 Sentence denotes Total responses (%) 145 (100%) 24 (17%) 28 (19%) 73 (50%) 20 (14%)
T63 6234-6254 Sentence denotes Deployed respondents
T64 6255-6326 Sentence denotes n (% of total deployed) 76 (100%) 7 (9%) 21 (28%) 39 (51%) 9 (12%)
T65 6327-6405 Sentence denotes Fully Completed Surveys n (%) 58 (76%) 7 (100%) 12 (57%) 31 (79%) 8 (89%)
T66 6406-6430 Sentence denotes Non-deployed respondents
T67 6431-6508 Sentence denotes n (% of total non-deployed) 69 (100%) 17 (25%) 7 (10%) 34 (49%) 11 (16%)
T68 6509-6786 Sentence denotes Fully completed surveys n (%) 62 (90%) 16 (94%) 6 (86%) 31 (91%) 9 (81%) While on redeployment, 74% of doctors reported that they did not perform any ophthalmic work.The remainder reported they participated in the ophthalmology on-calls (14%) or eye casualty shifts (10%).
T69 6787-6978 Sentence denotes Half of the redeployed ophthalmologists (56.4%) performed 12-h shifts with or without night shifts or weekend shifts while the rest performed a resident 8-h shift during normal working hours.
T70 6980-7004 Sentence denotes Location of redeployment
T71 7005-7077 Sentence denotes Table 2 outlines where each category of ophthalmologists was redeployed.
T72 7078-7205 Sentence denotes Most doctors (84%) were redeployed to areas where patients with Coronavirus disease (COVID-19) were suspected or being treated.
T73 7206-7307 Sentence denotes This included COVID-19 wards (50%), intensive care unit (ICU, 31%) and the emergency department (3%).
T74 7308-7411 Sentence denotes No statistical significance was found between grade of doctor and location of redeployment (p = 0.198).
T75 7412-7420 Sentence denotes Table 2.
T76 7422-7483 Sentence denotes Location of redeployment for all doctors who were redeployed.
T77 7484-7526 Sentence denotes All grades Consultant ST1-2 ST3+ Other
T78 7527-7573 Sentence denotes (n = 58) (n = 7) (n = 12) (n = 31) (n = 8)
T79 7574-7651 Sentence denotes COVID-19 medical/surgical ward 29 (50%) 5 (71%) 7 (58%) 13 (42%) 4 (50%)
T80 7652-7730 Sentence denotes NON COVID-19 medical surgical ward 8 (14%) 0 (0%) 3 (25%) 4 (13%) 1 (13%)
T81 7731-7784 Sentence denotes ITU/ICU 18 (31%) 1 (14%) 1 (8%) 13 (42%) 3 (38%)
T82 7785-7845 Sentence denotes Emergency department 2 (3%) 0 (0%) 1 (8%) 1 (3%) 0 (0%)
T83 7846-7892 Sentence denotes Other 1 (2%) 1 (14%) 0 (0%) 0 (0%) 0 (0%)
T84 7894-7929 Sentence denotes Tasks performed during redeployment
T85 7930-8076 Sentence denotes In the survey, 60% of respondents felt they had adequate training regarding the tasks expected of them before starting their role in redeployment.
T86 8077-8175 Sentence denotes Table 3 lists the tasks that were performed by ophthalmology doctors by their respective category.
T87 8176-8226 Sentence denotes Most doctors reported carrying out multiple tasks.
T88 8227-8385 Sentence denotes The ST1-2 group reported involvement in all aspects of care with exceptions in tasks relating to manual handling and general supportive care of patients (8%).
T89 8386-8482 Sentence denotes In contrast senior trainees and consultants contributed more toward supportive care of patients.
T90 8483-8632 Sentence denotes ST1-2 compared to ST3+ doctors performed significantly more clinical reviews of patients and of investigations (p = 0.019 and p = 0.04 respectively).
T91 8633-8736 Sentence denotes ST1-2 group compared to consultants performed significantly more prescribing of medication (p = 0.036).
T92 8737-8745 Sentence denotes Table 3.
T93 8747-8792 Sentence denotes Duties performed by ophthalmologist by grade.
T94 8793-8844 Sentence denotes All grades Consultant ST1-2 ST3+ Other p-value
T95 8845-8891 Sentence denotes (n = 58) (n = 7) (n = 12) (n = 31) (n = 8)
T96 8892-8975 Sentence denotes Clinical review of patients 43 (74%) 5 (71%) 12 (100%) 20 (65%) 6 (75%) 0.126
T97 8976-9089 Sentence denotes Review of investigations (blood tests, radiology imaging) 45 (78%) 6 (86%) 12 (100%) 21 (68%) 6 (75%) 0.139
T98 9090-9168 Sentence denotes Medication prescribing 45 (78%) 4 (57%) 12 (100%) 24 (77%) 5 (63%) 0.102
T99 9169-9266 Sentence denotes Supportive care (proning, washing, dressing) 19 (33%) 2 (29%) 1 (8%) 13 (42%) 3 (38%) 0.206
T100 9267-9337 Sentence denotes Other ward jobs 38 (66%) 2 (29%) 11 (92%) 20 (65%) 5 (63%) 0.048
T101 9338-9417 Sentence denotes Ward round participation 44 (76%) 5 (71%) 11 (92%) 23 (74%) 5 (63%) 0.468
T102 9419-9454 Sentence denotes Anxiety before and after deployment
T103 9455-9630 Sentence denotes The anxiety scores before redeployment were scored on a scale of 1-5 for each survey participant and this was compared to their anxiety scores after redeployment (Appendix 2).
T104 9631-9903 Sentence denotes Of those who were redeployed, there was a statistically significant improvement in anxiety after redeployment with a median pre-redeployment anxiety rating of 4 (moderately anxious) (IQR 3-5, mean = 3.6) and post-redeployment median of 3 (equivocal) (IQR 2-4, mean = 2.8).
T105 9904-10002 Sentence denotes The difference in anxiety was found to be statistically significant (p < 0.001, Wilcoxon ranking).
T106 10003-10145 Sentence denotes Fifty nine percent of people reported a reduction in anxiety with only 16% stating that their anxiety levels increased following redeployment.
T107 10146-10329 Sentence denotes The main reasons for this are outlined in Figure 1 which illustrates that one of the main factors responsible for reducing anxiety was the support from the staff at the deployed area.
T108 10330-10484 Sentence denotes Other reasons included concerns about the provision of adequate PPE, feeling out of their comfort zone and being in an environment with a high viral load.
T109 10485-10494 Sentence denotes Figure 1.
T110 10496-10591 Sentence denotes Graphical representation of the factors that impacted anxiety levels pre and post redeployment.
T111 10592-10707 Sentence denotes For those who were not redeployed, 62 survey respondents reported a median of moderate anxiety at being redeployed.
T112 10708-10833 Sentence denotes This was comparable to the anxiety level of the respondents who were redeployed with no statistically significant difference.
T113 10835-10941 Sentence denotes Subgroup analysis of post deployment anxiety, confidence in tasks expected and clarity of responsibilities
T114 10942-11134 Sentence denotes We assessed the subjective questions of PPE availability and training adequacy on their respective post deployment anxiety scores, confidence in tasks expected and clarity of responsibilities.
T115 11135-11165 Sentence denotes This is summarized in Table 4.
T116 11166-11358 Sentence denotes Those that stated adequate provision of PPE were found to have a statistically significant reduced anxiety level and higher level of clarity of tasks expected from them following redeployment.
T117 11359-11367 Sentence denotes Table 4.
T118 11369-11468 Sentence denotes Factors affecting anxiety, confidence in tasks and clarity on responsibilities during redeployment.
T119 11469-11636 Sentence denotes Anxiety after deployment1 (low) - 5 (high) Confidence in tasks after deployment 1 (low) - 5 (high) Clarity on responsibilities during redeployment 1 (low) - 5 (high)
T120 11637-11752 Sentence denotes Median (interquartile range) p-value Median (interquartile range) p-value Median (interquartile range) p-value
T121 11753-11790 Sentence denotes Those that responded PPE was adequate
T122 11791-11843 Sentence denotes No 4 (2-4) 0.040 1 (1-2) 0.059 2 (1-3) 0.038
T123 11844-11876 Sentence denotes Yes 3 (2-3) 2 (2-2) 3 (2-4)
T124 11877-11936 Sentence denotes Those that responded training was adequate (pre-deployment)
T125 11937-11991 Sentence denotes No 4 (2-4) 0.006 1 (1-2) <0.001 2 (1-3) 0.002
T126 11992-12024 Sentence denotes Yes 3 (2-3) 2 (2-3) 3 (2-4)
T127 12025-12313 Sentence denotes Total 3 (2-4) – 2 (1-2) 3 (2-3) – Those that stated they had adequate training prior to redeployment were found to have a statistically significant reduced anxiety level, increased confidence in tasks during redeployment and higher level of clarity of tasks expected from them.
T128 12315-12350 Sentence denotes PPE utilization during redeployment
T129 12351-12614 Sentence denotes As part of our survey, we evaluated the PPE provision of redeployed staff as advised by Public Health England (PHE) on hospital wards with or without confirmed or suspected Coronavirus disease, and for tasks that may be classed as an aerosol generating procedure.
T130 12615-12651 Sentence denotes The guidance is shown in Appendix 1.
T131 12652-12772 Sentence denotes We also specifically asked each survey respondent whether they felt that they had adequate PPE for the area they worked.
T132 12773-12899 Sentence denotes A total of 71% of survey respondents subjectively reported that they had adequate PPE for the area that they were assigned to.
T133 12900-13004 Sentence denotes Table 5 illustrates the analysis of the PPE that was reported to be provided by each of the respondents.
T134 13005-13128 Sentence denotes 71% of respondents were found to fulfill the specifications as published by Public Health England for the area they worked.
T135 13129-13250 Sentence denotes The least adequate provision of PPE was for face/eye protection in wards with patients who had Coronovirus disease (59%).
T136 13251-13259 Sentence denotes Table 5.
T137 13261-13319 Sentence denotes Reported PPE provision in different areas of redeployment.
T138 13320-13438 Sentence denotes Eye/face protection Respiratory protection Hand protection Body protection Percentage fully met PPE criteria (PHE)
T139 13439-13512 Sentence denotes COVID Ward (n = 29) (%) 17 (59%) 27 (93%) 28 (97%) 27 (93%) 16 (55%)
T140 13513-13577 Sentence denotes ED (n = 2) (%) 2 (100%) 2 (100%) 2 (100%) 2 (100%) 2 (100%)
T141 13578-13649 Sentence denotes ITU/ICU (n = 18) (%) 16 (89%) 17 (94%) 18 (100%) 15 (89%) 15 (83%)
T142 13650-13715 Sentence denotes Non COVID (n = 9) 9 (100%) 9 (100%) 8 (89%) 9 (100%) 8 (89%)
T143 13716-13769 Sentence denotes ALL 44 (76%) 55 (95%) 56 (97%) 54 (93%) 41 (71%)
T144 13771-13781 Sentence denotes Discussion
T145 13782-14033 Sentence denotes A novel coronavirus was identified by the Chinese Centre for Disease Control and Prevention following reports of pneumonia of unknown etiology in Wuhan, China in January 2020.8 It was termed COVID-19 and was declared a pandemic on 11 March by the WHO.
T146 14034-14374 Sentence denotes The index case entered the UK on 23 January with subsequent rapid spread across the country bringing unprecedented pressure to the UK NHS.9 Significant reorganization and restructuring of hospitals and trusts became essential, with institutions focusing their efforts on life threatening presentations, in patients with Coronavirus disease.
T147 14375-14501 Sentence denotes Our study has examined the extent and effect of redeployment on ophthalmology trainees to help with this crisis across the UK.
T148 14502-14805 Sentence denotes In the past, there have been cases where doctors were deployed to aid in a humanitarian cause such as the Ebola virus disease in West Africa or as military medics however there is nothing reported in the literature in the UK or other countries regarding a national scale redeployment across specialties.
T149 14806-15407 Sentence denotes Currently there are a few emerging descriptive reports of changes in working pattern in COVID-19 where orthopedic surgeons were redeployed to the emergency room10 and the neurology department was re-structured to support the rest of the hospital to cope with COVID-19 related emergencies in the United States.11 In the UK, the NHS England has produced a guidance on “Redeploying your secondary care medical workforce safely” to support critical care services in pandemic, ophthalmology being one of the specialties to be redeployed.4 Ophthalmology represents a significant medical workforce in the UK.
T150 15408-15757 Sentence denotes There are 135 NHS trusts which provide ophthalmic services with 1482 ophthalmic consultants, 662 staff grade, associate specialist and specialty grade doctors (SAS), and 706 ophthalmologists in training.12 Certainly in the authors’ trust, ophthalmology registrars and fellows are one of the few groups of doctors who have been redeployed to the ICU.
T151 15758-15908 Sentence denotes Our work is the first survey open to all ophthalmologists in the UK conducted to study redeployment to the unprecedented Coronavirus disease pandemic.
T152 15909-16060 Sentence denotes From the survey respondents, 52% of ophthalmologists were redeployed across all grades, more than half of them being ST3+ ophthalmologists in training.
T153 16061-16192 Sentence denotes The most common workplace was those areas with confirmed Coronavirus disease patients such as medical/surgical wards and ICU (81%).
T154 16193-16280 Sentence denotes It was interesting to note that only two ophthalmologists (3%) were assigned to the ED.
T155 16281-16604 Sentence denotes This is most likely to be due to the nature of ED working pattern where prompt management plan for new patients is required by all clinicians whereas ophthalmologists may be better utilized in a ward setting where they can support the medical team by performing other duties such as ordering investigations and prescribing.
T156 16605-16771 Sentence denotes This is well shown in our survey that the main roles of ophthalmologists were review of investigations (78%), prescribing (78%) and clinical review of patients (74%).
T157 16772-16957 Sentence denotes It is also worth noting that they were also able to perform clinical review of patients and this allowed the medical team to focus on tasks which require more complex medical decisions.
T158 16958-17191 Sentence denotes Our results also demonstrated that senior ophthalmologists were more likely to be involved in supportive care than our junior colleagues (33% vs 8%) and junior colleagues were more involved in clinical care of patients (100% vs 74%).
T159 17192-17647 Sentence denotes This is in accordance with the guidance published by the Academy of Medical Royal Colleges “Plans regarding trainee redeployment during the COVID-19 pandemic” which advocates skills-based redeployment of doctors.5 There was a statistically significant difference between the more junior ophthalmologists in training (ST 1-2) and their senior counterparts (ST3+) in the clinical review of patients and investigations. (p = 0.019 and p = 0.04 respectively).
T160 17648-17812 Sentence denotes Naturally the younger ophthalmologists had more recent medical experience and were able to be more comfortable in these tasks compared to their senior counterparts.
T161 17813-17993 Sentence denotes Much anxiety was expressed among ophthalmologists and other doctors regarding redeployment.13–15 We have evaluated the anxiety level of ophthalmologists pre- and post-redeployment.
T162 17994-18129 Sentence denotes A total of 59% of ophthalmologists reported improvement in anxiety level after the redeployment and this was statistically significant.
T163 18130-18298 Sentence denotes A similar observation was made by other authors.16 This study identified that support received from the areas deployed and training had a significant effect on anxiety.
T164 18299-18438 Sentence denotes It was also interesting to note that the anxiety levels were similar in both groups before redeployment (redeployment vs non-redeployment).
T165 18439-18505 Sentence denotes Our survey assessed the use of PPE in redeployed ophthalmologists.
T166 18506-18641 Sentence denotes When we cross-checked the PPE requirement per location against the PHE guidance, we discovered that only 71% met the national criteria.
T167 18642-18786 Sentence denotes This showed that the ophthalmologists were familiar enough with PHE guidance on appropriate PPE to identify shortfalls for the area they worked.
T168 18787-19051 Sentence denotes The inadequate availability of PPE has been highlighted in the media to be a national problem initially in the UK.17 The study also showed that the largest proportion of PPE deficiencies were found in eye/face protection on wards with Coronavirus disease patients.
T169 19052-19163 Sentence denotes This may be due to prioritization, frequent utilization and requirement with slow turnover of this kind of PPE.
T170 19164-19341 Sentence denotes At the time of the survey, the requirement for eye protection was recently published and there may have been a delay in implementation & dissemination of PPE across the country.
T171 19342-19416 Sentence denotes If we exclude eye/face protection, the compliance ranged from 83% to 100%.
T172 19417-19613 Sentence denotes The British Medical Association (BMA) conducted a survey across specialties regarding PPE availability.18 Their results mirrored our findings among ophthalmologists, in fact some areas much worse.
T173 19614-19817 Sentence denotes For example, in areas where aerosol-generating procedures were undertaken, 39.2% answered that they were provided with adequate eye/face protection in the BMA survey compared to our figure of 89% in ICU.
T174 19818-19939 Sentence denotes In our study, the lowest provision was the eye/face protection in COVID ward (59%), compared to 35.05% in the BMA survey.
T175 19940-20074 Sentence denotes A further study in the future assessing PPE provision would be useful to see if the initial shortfall of PPE compliance was addressed.
T176 20075-20133 Sentence denotes We recognize that there are some limitations to our study.
T177 20134-20247 Sentence denotes Ophthalmologists who have been redeployed are more likely to respond to the survey compared to those who are not.
T178 20248-20389 Sentence denotes Although our results showed that those who are not redeployed had a good survey completion rate, the questionnaire was shorter in this group.
T179 20390-20444 Sentence denotes The response rate was low in the deployed ST1-2 group.
T180 20445-20609 Sentence denotes This may be due to the fact that the majority of them were sent to wards (both COVID-19 and clean areas) where they were likely to have an antisocial shift pattern.
T181 20610-20664 Sentence denotes There was a non-randomized distribution of the survey.
T182 20665-20861 Sentence denotes This methodology was chosen to capture as many of those deployed across the UK targeting through trainee networks but in addition to allow snowballing of the survey from one respondent to another.
T183 20862-20925 Sentence denotes This could have introduced a potential source of sampling bias.
T184 20926-21077 Sentence denotes The survey allowed other reasons for anxiety to be identified such as the anxiety from litigation from working in an area outside of their expert area.
T185 21078-21258 Sentence denotes We did note that none of the respondents mentioned this as a reason for their anxiety and this may be partly due to assurances from their trust of the provision of trust indemnity.
T186 21259-21457 Sentence denotes Although the online survey provider only allowed a single response from a device, we do acknowledge that duplication of the survey could occur if an alternate device was used by the same individual.
T187 21458-21616 Sentence denotes We have performed the survey at this point to capture the reflection in action, but we understand that it does not represent the overall view of the pandemic.
T188 21617-21914 Sentence denotes Further studies assessing anxieties in other groups such as anesthetists or intensive care doctors would be useful to determine whether anxiety was created by being asked to work in unfamiliar physical environments with patients and diseases outside our usual practice or being in personal danger.
T189 21916-21927 Sentence denotes Conclusions
T190 21928-22051 Sentence denotes We found that ophthalmologists of all grades contributed to support the frontline workforce in COVID-19 pandemic in the UK.
T191 22052-22204 Sentence denotes There was much apprehension before redeployment, however we found that they were able to adapt to their new roles with appropriate support and training.
T192 22205-22356 Sentence denotes PPE provision was mainly in keeping with guidance from Public Health England except for eye/face protection on wards with Coronavirus disease patients.
T193 22357-22477 Sentence denotes This is the first time in our knowledge that ophthalmologists were redeployed to other specialties in a health pandemic.
T194 22478-22596 Sentence denotes The results of this study should help reduce the anxiety of redeployed doctors in areas out of their normal expertise.
T195 22597-22831 Sentence denotes The survey highlights and provides reassurance that at the time of need, stand-alone “specialist” services like ophthalmology can contribute to the work of the frontline staff in a supportive way outside their normal working practice.
T196 22833-22854 Sentence denotes Supplemental Material
T197 22855-22987 Sentence denotes Appedix_1 – Supplemental material for Redeployment of ophthalmologists in the United Kingdom during the Coronavirus Disease Pandemic
T198 22988-23024 Sentence denotes Click here for additional data file.
T199 23025-23385 Sentence denotes Supplemental material, Appedix_1 for Redeployment of ophthalmologists in the United Kingdom during the Coronavirus Disease Pandemic by Christina Lim, Ian De Silva, George Moussa, Tahir Islam, Lina Osman, Huzaifa Malick, Sundeep Deol, Moheeb Youssef, Abdelsattar Farrag, Rehana Ashraf, Sreekala Burgula and Jonathan Thompson in European Journal of Ophthalmology
T200 23386-23521 Sentence denotes Appendix_2_1 – Supplemental material for Redeployment of ophthalmologists in the United Kingdom during the Coronavirus Disease Pandemic
T201 23522-23558 Sentence denotes Click here for additional data file.
T202 23559-23922 Sentence denotes Supplemental material, Appendix_2_1 for Redeployment of ophthalmologists in the United Kingdom during the Coronavirus Disease Pandemic by Christina Lim, Ian De Silva, George Moussa, Tahir Islam, Lina Osman, Huzaifa Malick, Sundeep Deol, Moheeb Youssef, Abdelsattar Farrag, Rehana Ashraf, Sreekala Burgula and Jonathan Thompson in European Journal of Ophthalmology

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T6 43-51 SP_7 denotes COVID-19
T7 53-64 NCBITaxon:11118 denotes coronavirus
T8 295-301 NCBITaxon:9606 denotes people
T9 324-329 NCBITaxon:10239 denotes virus
T10 361-367 GO:0016265 denotes deaths
T11 409-417 SP_7 denotes COVID-19
T12 462-472 UBERON:0000970 denotes ophthalmic
T13 711-721 UBERON:0000970 denotes ophthalmic
T14 1800-1816 UBERON:0000970 denotes ophthalmologists
T15 2638-2648 UBERON:0000970 denotes ophthalmic
T16 2703-2719 UBERON:0000970 denotes Ophthalmologists
T17 2754-2770 UBERON:0000970 denotes ophthalmologists
T18 3649-3660 NCBITaxon:11118 denotes Coronavirus
T19 4297-4313 UBERON:0000970 denotes ophthalmologists
T20 5315-5321 NCBITaxon:33208 denotes animal
T21 5333-5338 SP_6;NCBITaxon:9606 denotes human
T22 5601-5617 UBERON:0000970 denotes ophthalmologists
T23 6760-6763 UBERON:0000970 denotes eye
T24 7142-7153 NCBITaxon:11118 denotes Coronavirus
T25 7163-7171 SP_7 denotes COVID-19
T26 7220-7228 SP_7 denotes COVID-19
T27 7242-7261 UBERON:0007221 denotes intensive care unit
T28 8767-8782 UBERON:0000970 denotes ophthalmologist
T29 10025-10031 NCBITaxon:9606 denotes people
T30 10473-10478 NCBITaxon:10239 denotes viral
T31 12524-12535 NCBITaxon:11118 denotes Coronavirus
T32 13173-13177 UBERON:0001456 denotes face
T33 13178-13181 UBERON:0000970 denotes eye
T34 13790-13801 NCBITaxon:11118 denotes coronavirus
T35 13973-13981 SP_7 denotes COVID-19
T36 14305-14309 UBERON:0000104 denotes life
T37 14354-14365 NCBITaxon:11118 denotes Coronavirus
T38 14608-14619 NCBITaxon:10376 denotes Ebola virus
T39 14894-14902 SP_7 denotes COVID-19
T40 14977-14986 UBERON:0001016 denotes neurology
T41 15065-15073 SP_7 denotes COVID-19
T42 15447-15457 UBERON:0000970 denotes ophthalmic
T43 15879-15890 NCBITaxon:11118 denotes Coronavirus
T44 16118-16129 NCBITaxon:11118 denotes Coronavirus
T45 16234-16250 UBERON:0000970 denotes ophthalmologists
T46 16431-16447 UBERON:0000970 denotes ophthalmologists
T47 17332-17340 SP_7 denotes COVID-19
T48 17479-17495 UBERON:0000970 denotes ophthalmologists
T49 17548-17551 PR:000010471 denotes ST3
T50 18663-18679 UBERON:0000970 denotes ophthalmologists
T51 18988-18991 UBERON:0000970 denotes eye
T52 18992-18996 UBERON:0001456 denotes face
T53 19022-19033 NCBITaxon:11118 denotes Coronavirus
T54 19211-19214 UBERON:0000970 denotes eye
T55 19356-19359 UBERON:0000970 denotes eye
T56 19360-19364 UBERON:0001456 denotes face
T57 19565-19581 UBERON:0000970 denotes ophthalmologists
T58 19742-19745 UBERON:0000970 denotes eye
T59 19746-19750 UBERON:0001456 denotes face
T60 19861-19864 UBERON:0000970 denotes eye
T61 19865-19869 UBERON:0001456 denotes face
T62 20134-20150 UBERON:0000970 denotes Ophthalmologists
T63 20524-20532 SP_7 denotes COVID-19
T64 21446-21456 NCBITaxon:1 denotes individual
T65 22023-22031 SP_7 denotes COVID-19
T66 22293-22296 UBERON:0000970 denotes eye
T67 22297-22301 UBERON:0001456 denotes face
T68 22327-22338 NCBITaxon:11118 denotes Coronavirus
T69 22959-22970 NCBITaxon:11118 denotes Coronavirus
T70 23128-23139 NCBITaxon:11118 denotes Coronavirus
T71 23493-23504 NCBITaxon:11118 denotes Coronavirus
T72 23665-23676 NCBITaxon:11118 denotes Coronavirus
T80083 43-51 SP_7 denotes COVID-19
T78402 53-64 NCBITaxon:11118 denotes coronavirus
T48913 295-301 NCBITaxon:9606 denotes people
T35892 324-329 NCBITaxon:10239 denotes virus
T66334 361-367 GO:0016265 denotes deaths
T61722 409-417 SP_7 denotes COVID-19
T69330 462-472 UBERON:0000970 denotes ophthalmic
T30727 711-721 UBERON:0000970 denotes ophthalmic
T26906 1800-1816 UBERON:0000970 denotes ophthalmologists
T23415 2638-2648 UBERON:0000970 denotes ophthalmic
T9113 2703-2719 UBERON:0000970 denotes Ophthalmologists
T8897 2754-2770 UBERON:0000970 denotes ophthalmologists
T99127 3649-3660 NCBITaxon:11118 denotes Coronavirus
T39173 4297-4313 UBERON:0000970 denotes ophthalmologists
T23117 5315-5321 NCBITaxon:33208 denotes animal
T63884 5333-5338 SP_6;NCBITaxon:9606 denotes human
T10317 5601-5617 UBERON:0000970 denotes ophthalmologists
T38542 6760-6763 UBERON:0000970 denotes eye
T46528 7142-7153 NCBITaxon:11118 denotes Coronavirus
T72884 7163-7171 SP_7 denotes COVID-19
T75390 7220-7228 SP_7 denotes COVID-19
T15032 7242-7261 UBERON:0007221 denotes intensive care unit
T56660 8767-8782 UBERON:0000970 denotes ophthalmologist
T79785 10025-10031 NCBITaxon:9606 denotes people
T90400 10473-10478 NCBITaxon:10239 denotes viral
T78012 12524-12535 NCBITaxon:11118 denotes Coronavirus
T54786 13173-13177 UBERON:0001456 denotes face
T19269 13178-13181 UBERON:0000970 denotes eye
T59307 13790-13801 NCBITaxon:11118 denotes coronavirus
T65886 13973-13981 SP_7 denotes COVID-19
T5316 14305-14309 UBERON:0000104 denotes life
T17119 14354-14365 NCBITaxon:11118 denotes Coronavirus
T33098 14608-14619 NCBITaxon:10376 denotes Ebola virus
T15040 14894-14902 SP_7 denotes COVID-19
T582 14977-14986 UBERON:0001016 denotes neurology
T11637 15065-15073 SP_7 denotes COVID-19
T22768 15447-15457 UBERON:0000970 denotes ophthalmic
T36095 15879-15890 NCBITaxon:11118 denotes Coronavirus
T82784 16118-16129 NCBITaxon:11118 denotes Coronavirus
T84019 16234-16250 UBERON:0000970 denotes ophthalmologists
T45225 16431-16447 UBERON:0000970 denotes ophthalmologists
T1956 17332-17340 SP_7 denotes COVID-19
T63366 17479-17495 UBERON:0000970 denotes ophthalmologists
T65576 17548-17551 PR:000010471 denotes ST3
T96983 18663-18679 UBERON:0000970 denotes ophthalmologists
T36292 18988-18991 UBERON:0000970 denotes eye
T88228 18992-18996 UBERON:0001456 denotes face
T7966 19022-19033 NCBITaxon:11118 denotes Coronavirus
T24224 19211-19214 UBERON:0000970 denotes eye
T92181 19356-19359 UBERON:0000970 denotes eye
T75481 19360-19364 UBERON:0001456 denotes face
T39869 19565-19581 UBERON:0000970 denotes ophthalmologists
T81762 19742-19745 UBERON:0000970 denotes eye
T19424 19746-19750 UBERON:0001456 denotes face
T65633 19861-19864 UBERON:0000970 denotes eye
T35628 19865-19869 UBERON:0001456 denotes face
T67027 20134-20150 UBERON:0000970 denotes Ophthalmologists
T71910 20524-20532 SP_7 denotes COVID-19
T25924 21446-21456 NCBITaxon:1 denotes individual
T24796 22023-22031 SP_7 denotes COVID-19
T2432 22293-22296 UBERON:0000970 denotes eye
T54132 22297-22301 UBERON:0001456 denotes face
T34672 22327-22338 NCBITaxon:11118 denotes Coronavirus
T11925 22959-22970 NCBITaxon:11118 denotes Coronavirus
T52595 23128-23139 NCBITaxon:11118 denotes Coronavirus
T55978 23493-23504 NCBITaxon:11118 denotes Coronavirus
T15553 23665-23676 NCBITaxon:11118 denotes Coronavirus