PMC:7456455 / 7328-8913 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7456455","sourcedb":"PMC","sourceid":"7456455","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7456455","text":"3.1 It is customary to divide the course of the infection into different stages: Preinfection (co-morbidities), asymptomatic, early clinical, severe clinical (acute respiratory distress syndrome–ARDS), and recovery [8,9], Fig. 2 . This natural timing should be used to establish key point-of-care sampling timepoints, avoiding patient discomfort and to focus resources. Infection can progress or be aborted at every stage, presenting a dynamic continuum, to which macrophages and monocytes contribute, together with other immune and non-immune elements; MPS contributions to COVID-19 resistance and pathogenesis are still underestimated and poorly understood.\nFig. 2 Decision points that determine the outcome of COVID-19 infection and requirements for a monocyte activation assay. A time and severity pattern has emerged for COVID-19 progression. The first days, first and second week timelines are turning points for resolution or deterioration. Epidemiologic precision for these milestones and precise parameters will be valuable for strategic sampling and patient stratification, sparing resources and patient material. With limited volumes of peripheral blood, a window on progression of the infection can be obtained by studying activation of the mononuclear phagocyte system, largely represented by monocytes in blood. The cells are biosynthetically active and relatively long lived, ideal to trace long term effects of comorbidities and infection. We highlight selected functional categories that should be addressed in monocytes and can be adapted to particular applications.\n","divisions":[{"label":"label","span":{"begin":661,"end":667}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T97","span":{"begin":464,"end":475},"obj":"Body_part"},{"id":"T98","span":{"begin":480,"end":489},"obj":"Body_part"},{"id":"T99","span":{"begin":554,"end":557},"obj":"Body_part"},{"id":"T100","span":{"begin":755,"end":763},"obj":"Body_part"},{"id":"T101","span":{"begin":1159,"end":1164},"obj":"Body_part"},{"id":"T102","span":{"begin":1253,"end":1281},"obj":"Body_part"},{"id":"T103","span":{"begin":1306,"end":1315},"obj":"Body_part"},{"id":"T104","span":{"begin":1319,"end":1324},"obj":"Body_part"},{"id":"T105","span":{"begin":1330,"end":1335},"obj":"Body_part"},{"id":"T106","span":{"begin":1528,"end":1537},"obj":"Body_part"}],"attributes":[{"id":"A97","pred":"fma_id","subj":"T97","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A98","pred":"fma_id","subj":"T98","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A99","pred":"fma_id","subj":"T99","obj":"http://purl.org/sig/ont/fma/fma84189"},{"id":"A100","pred":"fma_id","subj":"T100","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma84189"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A105","pred":"fma_id","subj":"T105","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma62864"},{"subj":"T97","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T98","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T99","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T100","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T101","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T102","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T103","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T104","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T105","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T106","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T23","span":{"begin":1159,"end":1164},"obj":"Body_part"},{"id":"T24","span":{"begin":1319,"end":1324},"obj":"Body_part"}],"attributes":[{"id":"A23","pred":"uberon_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T40","span":{"begin":48,"end":57},"obj":"Disease"},{"id":"T41","span":{"begin":159,"end":194},"obj":"Disease"},{"id":"T42","span":{"begin":165,"end":194},"obj":"Disease"},{"id":"T43","span":{"begin":195,"end":199},"obj":"Disease"},{"id":"T44","span":{"begin":370,"end":379},"obj":"Disease"},{"id":"T45","span":{"begin":554,"end":557},"obj":"Disease"},{"id":"T46","span":{"begin":575,"end":583},"obj":"Disease"},{"id":"T47","span":{"begin":713,"end":721},"obj":"Disease"},{"id":"T48","span":{"begin":722,"end":731},"obj":"Disease"},{"id":"T49","span":{"begin":826,"end":834},"obj":"Disease"},{"id":"T50","span":{"begin":1197,"end":1206},"obj":"Disease"},{"id":"T51","span":{"begin":1445,"end":1454},"obj":"Disease"}],"attributes":[{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0009971"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0019249"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T40","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T41","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T42","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T43","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T44","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T45","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T131","span":{"begin":353,"end":358},"obj":"http://purl.obolibrary.org/obo/CLO_0009985"},{"id":"T132","span":{"begin":434,"end":435},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T133","span":{"begin":480,"end":489},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T134","span":{"begin":753,"end":754},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T135","span":{"begin":755,"end":763},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T136","span":{"begin":764,"end":774},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T137","span":{"begin":782,"end":783},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T138","span":{"begin":810,"end":813},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T139","span":{"begin":1159,"end":1164},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T140","span":{"begin":1159,"end":1164},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T141","span":{"begin":1166,"end":1167},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T142","span":{"begin":1235,"end":1245},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T143","span":{"begin":1253,"end":1274},"obj":"http://purl.obolibrary.org/obo/CL_0000113"},{"id":"T144","span":{"begin":1306,"end":1315},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T145","span":{"begin":1319,"end":1324},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T146","span":{"begin":1319,"end":1324},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T147","span":{"begin":1330,"end":1335},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T148","span":{"begin":1357,"end":1363},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T149","span":{"begin":1528,"end":1537},"obj":"http://purl.obolibrary.org/obo/CL_0000576"}],"attributes":[{"subj":"T131","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T132","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T133","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T134","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T135","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T136","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T137","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T138","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T140","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T141","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T142","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T143","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T144","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T145","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T146","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T147","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T148","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T149","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T32","span":{"begin":599,"end":611},"obj":"http://purl.obolibrary.org/obo/GO_0009405"},{"id":"T33","span":{"begin":755,"end":774},"obj":"http://purl.obolibrary.org/obo/GO_0042117"}],"attributes":[{"subj":"T32","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T45","span":{"begin":0,"end":80},"obj":"Sentence"},{"id":"T46","span":{"begin":81,"end":230},"obj":"Sentence"},{"id":"T47","span":{"begin":231,"end":369},"obj":"Sentence"},{"id":"T48","span":{"begin":370,"end":659},"obj":"Sentence"},{"id":"T49","span":{"begin":660,"end":781},"obj":"Sentence"},{"id":"T50","span":{"begin":782,"end":847},"obj":"Sentence"},{"id":"T51","span":{"begin":848,"end":947},"obj":"Sentence"},{"id":"T52","span":{"begin":948,"end":1123},"obj":"Sentence"},{"id":"T53","span":{"begin":1124,"end":1325},"obj":"Sentence"},{"id":"T54","span":{"begin":1326,"end":1455},"obj":"Sentence"},{"id":"T55","span":{"begin":1456,"end":1584},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T45","pred":"source","obj":"LitCovid-sentences"},{"subj":"T46","pred":"source","obj":"LitCovid-sentences"},{"subj":"T47","pred":"source","obj":"LitCovid-sentences"},{"subj":"T48","pred":"source","obj":"LitCovid-sentences"},{"subj":"T49","pred":"source","obj":"LitCovid-sentences"},{"subj":"T50","pred":"source","obj":"LitCovid-sentences"},{"subj":"T51","pred":"source","obj":"LitCovid-sentences"},{"subj":"T52","pred":"source","obj":"LitCovid-sentences"},{"subj":"T53","pred":"source","obj":"LitCovid-sentences"},{"subj":"T54","pred":"source","obj":"LitCovid-sentences"},{"subj":"T55","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":165,"end":185},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002098"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"2_test","denotations":[{"id":"32861199-32171076-26409812","span":{"begin":216,"end":217},"obj":"32171076"},{"id":"32861199-32444460-26409813","span":{"begin":218,"end":219},"obj":"32444460"}],"attributes":[{"subj":"32861199-32171076-26409812","pred":"source","obj":"2_test"},{"subj":"32861199-32444460-26409813","pred":"source","obj":"2_test"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T217","span":{"begin":165,"end":176},"obj":"UBERON:0001004"},{"id":"T218","span":{"begin":464,"end":475},"obj":"CL:0000235"},{"id":"T219","span":{"begin":480,"end":489},"obj":"CL:0000576"},{"id":"T220","span":{"begin":522,"end":528},"obj":"UBERON:0002405"},{"id":"T221","span":{"begin":537,"end":543},"obj":"UBERON:0002405"},{"id":"T222","span":{"begin":575,"end":583},"obj":"SP_7"},{"id":"T223","span":{"begin":713,"end":721},"obj":"SP_7"},{"id":"T224","span":{"begin":755,"end":763},"obj":"CL:0000576"},{"id":"T225","span":{"begin":826,"end":834},"obj":"SP_7"},{"id":"T226","span":{"begin":1159,"end":1164},"obj":"UBERON:0000178"},{"id":"T227","span":{"begin":1253,"end":1264},"obj":"GO:0005634;CL:0000113"},{"id":"T228","span":{"begin":1265,"end":1274},"obj":"CL:0000113"},{"id":"T229","span":{"begin":1306,"end":1315},"obj":"CL:0000576"},{"id":"T230","span":{"begin":1319,"end":1324},"obj":"UBERON:0000178"},{"id":"T231","span":{"begin":1528,"end":1537},"obj":"CL:0000576"}],"attributes":[{"subj":"T217","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T218","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T219","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T220","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T221","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T222","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T223","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T224","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T225","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T226","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T227","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T228","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T229","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T230","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T231","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"141","span":{"begin":1060,"end":1067},"obj":"Species"},{"id":"142","span":{"begin":1106,"end":1113},"obj":"Species"},{"id":"143","span":{"begin":713,"end":721},"obj":"Disease"},{"id":"144","span":{"begin":722,"end":731},"obj":"Disease"},{"id":"145","span":{"begin":826,"end":834},"obj":"Disease"},{"id":"146","span":{"begin":1197,"end":1206},"obj":"Disease"},{"id":"147","span":{"begin":1445,"end":1454},"obj":"Disease"},{"id":"154","span":{"begin":327,"end":334},"obj":"Species"},{"id":"155","span":{"begin":48,"end":57},"obj":"Disease"},{"id":"156","span":{"begin":159,"end":199},"obj":"Disease"},{"id":"157","span":{"begin":370,"end":379},"obj":"Disease"},{"id":"158","span":{"begin":554,"end":557},"obj":"Disease"},{"id":"159","span":{"begin":575,"end":583},"obj":"Disease"}],"attributes":[{"id":"A141","pred":"tao:has_database_id","subj":"141","obj":"Tax:9606"},{"id":"A142","pred":"tao:has_database_id","subj":"142","obj":"Tax:9606"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"MESH:C000657245"},{"id":"A144","pred":"tao:has_database_id","subj":"144","obj":"MESH:D007239"},{"id":"A145","pred":"tao:has_database_id","subj":"145","obj":"MESH:C000657245"},{"id":"A146","pred":"tao:has_database_id","subj":"146","obj":"MESH:D007239"},{"id":"A147","pred":"tao:has_database_id","subj":"147","obj":"MESH:D007239"},{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"Tax:9606"},{"id":"A155","pred":"tao:has_database_id","subj":"155","obj":"MESH:D007239"},{"id":"A156","pred":"tao:has_database_id","subj":"156","obj":"MESH:D012128"},{"id":"A157","pred":"tao:has_database_id","subj":"157","obj":"MESH:D007239"},{"id":"A158","pred":"tao:has_database_id","subj":"158","obj":"MESH:D009084"},{"id":"A159","pred":"tao:has_database_id","subj":"159","obj":"MESH:C000657245"},{"subj":"141","pred":"source","obj":"LitCovid-PubTator"},{"subj":"142","pred":"source","obj":"LitCovid-PubTator"},{"subj":"143","pred":"source","obj":"LitCovid-PubTator"},{"subj":"144","pred":"source","obj":"LitCovid-PubTator"},{"subj":"145","pred":"source","obj":"LitCovid-PubTator"},{"subj":"146","pred":"source","obj":"LitCovid-PubTator"},{"subj":"147","pred":"source","obj":"LitCovid-PubTator"},{"subj":"154","pred":"source","obj":"LitCovid-PubTator"},{"subj":"155","pred":"source","obj":"LitCovid-PubTator"},{"subj":"156","pred":"source","obj":"LitCovid-PubTator"},{"subj":"157","pred":"source","obj":"LitCovid-PubTator"},{"subj":"158","pred":"source","obj":"LitCovid-PubTator"},{"subj":"159","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"MyTest","denotations":[{"id":"32861199-32171076-26409812","span":{"begin":216,"end":217},"obj":"32171076"},{"id":"32861199-32444460-26409813","span":{"begin":218,"end":219},"obj":"32444460"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"attributes":[{"subj":"32861199-32171076-26409812","pred":"source","obj":"MyTest"},{"subj":"32861199-32444460-26409813","pred":"source","obj":"MyTest"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ece793","default":true},{"id":"LitCovid-PD-UBERON","color":"#cd93ec"},{"id":"LitCovid-PD-MONDO","color":"#93ecb3"},{"id":"LitCovid-PD-CLO","color":"#ec9993"},{"id":"LitCovid-PD-GO-BP","color":"#93a7ec"},{"id":"LitCovid-sentences","color":"#c1ec93"},{"id":"LitCovid-PD-HP","color":"#ec93db"},{"id":"2_test","color":"#93ece3"},{"id":"LitCovid-PMC-OGER-BB","color":"#ecc993"},{"id":"LitCovid-PubTator","color":"#af93ec"},{"id":"MyTest","color":"#93ec95"}]}]}}