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PMC:7456455 / 3826-5073 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T51 168-172 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T52 195-212 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T53 207-212 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T54 442-447 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T55 455-483 Body_part denotes Mononuclear Phagocyte System http://purl.org/sig/ont/fma/fma84189
T56 455-476 Body_part denotes Mononuclear Phagocyte http://purl.org/sig/ont/fma/fma273563
T57 485-488 Body_part denotes MPS http://purl.org/sig/ont/fma/fma84189
T58 565-576 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T59 585-594 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T60 598-605 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T61 644-655 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T62 685-707 Body_part denotes Mononuclear phagocytes http://purl.org/sig/ont/fma/fma273563
T63 878-881 Body_part denotes MPS http://purl.org/sig/ont/fma/fma84189
T64 1072-1077 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T65 1163-1171 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 565-576 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T15 1072-1077 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 42-50 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 51-60 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 238-253 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T22 244-253 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 485-488 Disease denotes MPS http://purl.obolibrary.org/obo/MONDO_0019249
T24 878-881 Disease denotes MPS http://purl.obolibrary.org/obo/MONDO_0019249
T25 957-969 Disease denotes syndrome, as http://purl.obolibrary.org/obo/MONDO_0019344
T26 994-998 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 1020-1028 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1029-1038 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T29 1143-1152 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T75 13-20 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airways
T76 31-32 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 33-38 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T78 99-104 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T79 143-144 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 180-190 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T81 195-212 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T82 442-447 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T83 455-476 http://purl.obolibrary.org/obo/CL_0000113 denotes Mononuclear Phagocyte
T84 565-569 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T85 585-594 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T86 619-621 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T87 685-707 http://purl.obolibrary.org/obo/CL_0000113 denotes Mononuclear phagocytes
T88 885-886 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1072-1077 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T90 1072-1077 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T91 1115-1116 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 1163-1171 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T93 1172-1182 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T94 1191-1192 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T16 238-253 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T17 313-338 http://purl.obolibrary.org/obo/GO_0002250 denotes adaptive immune responses
T18 947-956 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T19 1163-1182 http://purl.obolibrary.org/obo/GO_0042117 denotes monocyte activation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-173 Sentence denotes Although the airways represent a focus of COVID-19 infection and immediate threat to the host, the virus can disseminate systemically and have a profound impact on the body.
T28 174-432 Sentence denotes While epithelial and endothelial cells are the major targets of viral infection through expression of the ACE2 receptor [13,14] innate and adaptive immune responses of the host contribute critical resistance and pathogenic responses at all stages of disease.
T29 433-684 Sentence denotes Effector cells of the Mononuclear Phagocyte System (MPS), whether they become infected [15] or not, depend mostly on recruitment of bone marrow-derived monocytes to tissues [16], [17], [18] rather than resident macrophages of embryonic origin [16,19].
T30 685-873 Sentence denotes Mononuclear phagocytes collaborate with other immune and non-immune pathways to mediate local and systemic anti-viral resistance and recovery, while also promoting morbidity and mortality.
T31 874-1044 Sentence denotes The MPS is a major contributor to the hyperinflammatory and procoagulant secretion syndrome, as demonstrated in earlier SARS syndromes as well as COVID-19 infection [20].
T32 1045-1247 Sentence denotes Ready access to peripheral blood samples from those at risk, provides a window on the dynamics of infection and their monocyte activation status, a guide to clinical diagnosis, treatment and prevention.

2_test

Id Subject Object Predicate Lexical cue
32861199-32142651-26409796 295-297 32142651 denotes 13
32861199-32015507-26409797 298-300 32015507 denotes 14
32861199-29500179-26409798 607-609 29500179 denotes 16
32861199-29500179-26409799 677-679 29500179 denotes 16
32861199-30332628-26409800 680-682 30332628 denotes 19
32861199-32534467-26409801 1040-1042 32534467 denotes 20

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T133 13-20 UBERON:0001005 denotes airways
T134 42-50 SP_7 denotes COVID-19
T135 99-104 NCBITaxon:10239 denotes virus
T136 180-190 CL:0000066;UBERON:0000483 denotes epithelial
T137 195-206 UBERON:0001986;CL:0000115 denotes endothelial
T138 207-212 CL:0000115 denotes cells
T139 238-243 NCBITaxon:10239 denotes viral
T140 262-272 GO:0010467 denotes expression
T141 280-284 G_3;PG_10;PR:000003622 denotes ACE2
T142 302-308 GO:0045087 denotes innate
T143 313-321 GO:0002250 denotes adaptive
T144 322-328 GO:0002250;UBERON:0002405 denotes immune
T145 329-338 GO:0002250 denotes responses
T146 433-441 CHEBI:35224;CHEBI:35224 denotes Effector
T147 455-466 GO:0005634;CL:0000113 denotes Mononuclear
T148 467-476 CL:0000113 denotes Phagocyte
T149 565-576 UBERON:0002371 denotes bone marrow
T150 585-594 CL:0000576 denotes monocytes
T151 598-605 UBERON:0000479 denotes tissues
T152 644-655 CL:0000235 denotes macrophages
T153 659-668 UBERON:0000922 denotes embryonic
T154 685-696 GO:0005634;CL:0000113 denotes Mononuclear
T155 697-707 CL:0000113 denotes phagocytes
T156 731-737 UBERON:0002405 denotes immune
T157 746-752 UBERON:0002405 denotes immune
T158 797-802 NCBITaxon:10239 denotes viral
T159 934-946 GO:0050817 denotes procoagulant
T160 994-998 SP_10 denotes SARS
T161 1020-1028 SP_7 denotes COVID-19
T162 1072-1077 UBERON:0000178 denotes blood
T163 1163-1171 CL:0000576 denotes monocyte

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
90 280-284 Gene denotes ACE2 Gene:59272
91 42-50 Disease denotes COVID-19 MESH:C000657245
92 51-60 Disease denotes infection MESH:D007239
93 238-253 Disease denotes viral infection MESH:D001102
94 485-488 Disease denotes MPS MESH:D009084
95 511-519 Disease denotes infected MESH:D007239
96 863-872 Disease denotes mortality MESH:D003643
97 878-881 Disease denotes MPS MESH:D009084
98 947-965 Disease denotes secretion syndrome MESH:D047748
99 1020-1028 Disease denotes COVID-19 MESH:C000657245
100 1029-1038 Disease denotes infection MESH:D007239
101 1143-1152 Disease denotes infection MESH:D007239

MyTest

Id Subject Object Predicate Lexical cue
32861199-32142651-26409796 295-297 32142651 denotes 13
32861199-32015507-26409797 298-300 32015507 denotes 14
32861199-29500179-26409798 607-609 29500179 denotes 16
32861199-29500179-26409799 677-679 29500179 denotes 16
32861199-30332628-26409800 680-682 30332628 denotes 19
32861199-32534467-26409801 1040-1042 32534467 denotes 20