PMC:7456455 / 3826-5073
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T51 | 168-172 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
T52 | 195-212 | Body_part | denotes | endothelial cells | http://purl.org/sig/ont/fma/fma66772 |
T53 | 207-212 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T54 | 442-447 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T55 | 455-483 | Body_part | denotes | Mononuclear Phagocyte System | http://purl.org/sig/ont/fma/fma84189 |
T56 | 455-476 | Body_part | denotes | Mononuclear Phagocyte | http://purl.org/sig/ont/fma/fma273563 |
T57 | 485-488 | Body_part | denotes | MPS | http://purl.org/sig/ont/fma/fma84189 |
T58 | 565-576 | Body_part | denotes | bone marrow | http://purl.org/sig/ont/fma/fma9608 |
T59 | 585-594 | Body_part | denotes | monocytes | http://purl.org/sig/ont/fma/fma62864 |
T60 | 598-605 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
T61 | 644-655 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
T62 | 685-707 | Body_part | denotes | Mononuclear phagocytes | http://purl.org/sig/ont/fma/fma273563 |
T63 | 878-881 | Body_part | denotes | MPS | http://purl.org/sig/ont/fma/fma84189 |
T64 | 1072-1077 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T65 | 1163-1171 | Body_part | denotes | monocyte | http://purl.org/sig/ont/fma/fma62864 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T14 | 565-576 | Body_part | denotes | bone marrow | http://purl.obolibrary.org/obo/UBERON_0002371 |
T15 | 1072-1077 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T19 | 42-50 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T20 | 51-60 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T21 | 238-253 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
T22 | 244-253 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T23 | 485-488 | Disease | denotes | MPS | http://purl.obolibrary.org/obo/MONDO_0019249 |
T24 | 878-881 | Disease | denotes | MPS | http://purl.obolibrary.org/obo/MONDO_0019249 |
T25 | 957-969 | Disease | denotes | syndrome, as | http://purl.obolibrary.org/obo/MONDO_0019344 |
T26 | 994-998 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T27 | 1020-1028 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T28 | 1029-1038 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T29 | 1143-1152 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T75 | 13-20 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
T76 | 31-32 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T77 | 33-38 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focus |
T78 | 99-104 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T79 | 143-144 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T80 | 180-190 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T81 | 195-212 | http://purl.obolibrary.org/obo/CL_0000115 | denotes | endothelial cells |
T82 | 442-447 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T83 | 455-476 | http://purl.obolibrary.org/obo/CL_0000113 | denotes | Mononuclear Phagocyte |
T84 | 565-569 | http://purl.obolibrary.org/obo/UBERON_0002481 | denotes | bone |
T85 | 585-594 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocytes |
T86 | 619-621 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T87 | 685-707 | http://purl.obolibrary.org/obo/CL_0000113 | denotes | Mononuclear phagocytes |
T88 | 885-886 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T89 | 1072-1077 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T90 | 1072-1077 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T91 | 1115-1116 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T92 | 1163-1171 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocyte |
T93 | 1172-1182 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
T94 | 1191-1192 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16 | 238-253 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
T17 | 313-338 | http://purl.obolibrary.org/obo/GO_0002250 | denotes | adaptive immune responses |
T18 | 947-956 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
T19 | 1163-1182 | http://purl.obolibrary.org/obo/GO_0042117 | denotes | monocyte activation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T27 | 0-173 | Sentence | denotes | Although the airways represent a focus of COVID-19 infection and immediate threat to the host, the virus can disseminate systemically and have a profound impact on the body. |
T28 | 174-432 | Sentence | denotes | While epithelial and endothelial cells are the major targets of viral infection through expression of the ACE2 receptor [13,14] innate and adaptive immune responses of the host contribute critical resistance and pathogenic responses at all stages of disease. |
T29 | 433-684 | Sentence | denotes | Effector cells of the Mononuclear Phagocyte System (MPS), whether they become infected [15] or not, depend mostly on recruitment of bone marrow-derived monocytes to tissues [16], [17], [18] rather than resident macrophages of embryonic origin [16,19]. |
T30 | 685-873 | Sentence | denotes | Mononuclear phagocytes collaborate with other immune and non-immune pathways to mediate local and systemic anti-viral resistance and recovery, while also promoting morbidity and mortality. |
T31 | 874-1044 | Sentence | denotes | The MPS is a major contributor to the hyperinflammatory and procoagulant secretion syndrome, as demonstrated in earlier SARS syndromes as well as COVID-19 infection [20]. |
T32 | 1045-1247 | Sentence | denotes | Ready access to peripheral blood samples from those at risk, provides a window on the dynamics of infection and their monocyte activation status, a guide to clinical diagnosis, treatment and prevention. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32861199-32142651-26409796 | 295-297 | 32142651 | denotes | 13 |
32861199-32015507-26409797 | 298-300 | 32015507 | denotes | 14 |
32861199-29500179-26409798 | 607-609 | 29500179 | denotes | 16 |
32861199-29500179-26409799 | 677-679 | 29500179 | denotes | 16 |
32861199-30332628-26409800 | 680-682 | 30332628 | denotes | 19 |
32861199-32534467-26409801 | 1040-1042 | 32534467 | denotes | 20 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T133 | 13-20 | UBERON:0001005 | denotes | airways |
T134 | 42-50 | SP_7 | denotes | COVID-19 |
T135 | 99-104 | NCBITaxon:10239 | denotes | virus |
T136 | 180-190 | CL:0000066;UBERON:0000483 | denotes | epithelial |
T137 | 195-206 | UBERON:0001986;CL:0000115 | denotes | endothelial |
T138 | 207-212 | CL:0000115 | denotes | cells |
T139 | 238-243 | NCBITaxon:10239 | denotes | viral |
T140 | 262-272 | GO:0010467 | denotes | expression |
T141 | 280-284 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T142 | 302-308 | GO:0045087 | denotes | innate |
T143 | 313-321 | GO:0002250 | denotes | adaptive |
T144 | 322-328 | GO:0002250;UBERON:0002405 | denotes | immune |
T145 | 329-338 | GO:0002250 | denotes | responses |
T146 | 433-441 | CHEBI:35224;CHEBI:35224 | denotes | Effector |
T147 | 455-466 | GO:0005634;CL:0000113 | denotes | Mononuclear |
T148 | 467-476 | CL:0000113 | denotes | Phagocyte |
T149 | 565-576 | UBERON:0002371 | denotes | bone marrow |
T150 | 585-594 | CL:0000576 | denotes | monocytes |
T151 | 598-605 | UBERON:0000479 | denotes | tissues |
T152 | 644-655 | CL:0000235 | denotes | macrophages |
T153 | 659-668 | UBERON:0000922 | denotes | embryonic |
T154 | 685-696 | GO:0005634;CL:0000113 | denotes | Mononuclear |
T155 | 697-707 | CL:0000113 | denotes | phagocytes |
T156 | 731-737 | UBERON:0002405 | denotes | immune |
T157 | 746-752 | UBERON:0002405 | denotes | immune |
T158 | 797-802 | NCBITaxon:10239 | denotes | viral |
T159 | 934-946 | GO:0050817 | denotes | procoagulant |
T160 | 994-998 | SP_10 | denotes | SARS |
T161 | 1020-1028 | SP_7 | denotes | COVID-19 |
T162 | 1072-1077 | UBERON:0000178 | denotes | blood |
T163 | 1163-1171 | CL:0000576 | denotes | monocyte |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
90 | 280-284 | Gene | denotes | ACE2 | Gene:59272 |
91 | 42-50 | Disease | denotes | COVID-19 | MESH:C000657245 |
92 | 51-60 | Disease | denotes | infection | MESH:D007239 |
93 | 238-253 | Disease | denotes | viral infection | MESH:D001102 |
94 | 485-488 | Disease | denotes | MPS | MESH:D009084 |
95 | 511-519 | Disease | denotes | infected | MESH:D007239 |
96 | 863-872 | Disease | denotes | mortality | MESH:D003643 |
97 | 878-881 | Disease | denotes | MPS | MESH:D009084 |
98 | 947-965 | Disease | denotes | secretion syndrome | MESH:D047748 |
99 | 1020-1028 | Disease | denotes | COVID-19 | MESH:C000657245 |
100 | 1029-1038 | Disease | denotes | infection | MESH:D007239 |
101 | 1143-1152 | Disease | denotes | infection | MESH:D007239 |
MyTest
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32861199-32142651-26409796 | 295-297 | 32142651 | denotes | 13 |
32861199-32015507-26409797 | 298-300 | 32015507 | denotes | 14 |
32861199-29500179-26409798 | 607-609 | 29500179 | denotes | 16 |
32861199-29500179-26409799 | 677-679 | 29500179 | denotes | 16 |
32861199-30332628-26409800 | 680-682 | 30332628 | denotes | 19 |
32861199-32534467-26409801 | 1040-1042 | 32534467 | denotes | 20 |