PMC:7455510 / 6900-10217
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T12 | 273-278 | Body_part | denotes | Liver | http://purl.org/sig/ont/fma/fma7197 |
| T13 | 314-320 | Body_part | denotes | Kidney | http://purl.org/sig/ont/fma/fma7203 |
| T14 | 401-406 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T15 | 461-466 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T16 | 690-696 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T17 | 756-767 | Body_part | denotes | Lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T18 | 944-951 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T19 | 1063-1068 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T20 | 1828-1851 | Body_part | denotes | hematopoietic stem cell | http://purl.org/sig/ont/fma/fma86475 |
| T21 | 1847-1851 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T22 | 1903-1907 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T23 | 1914-1927 | Body_part | denotes | lymphoblastic | http://purl.org/sig/ont/fma/fma83030 |
| T24 | 1946-1950 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T25 | 1957-1970 | Body_part | denotes | lymphoblastic | http://purl.org/sig/ont/fma/fma83030 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T8 | 273-278 | Body_part | denotes | Liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T9 | 314-320 | Body_part | denotes | Kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T10 | 690-696 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T11 | 1063-1068 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T41 | 68-76 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T42 | 194-197 | Disease | denotes | PID | http://purl.obolibrary.org/obo/MONDO_0000922 |
| T43 | 222-246 | Disease | denotes | Myelodysplastic syndrome | http://purl.obolibrary.org/obo/MONDO_0018881|http://purl.obolibrary.org/obo/MONDO_0044873 |
| T45 | 252-257 | Disease | denotes | B-ALL | http://purl.obolibrary.org/obo/MONDO_0020511 |
| T46 | 258-263 | Disease | denotes | T-ALL | http://purl.obolibrary.org/obo/MONDO_0004963|http://purl.obolibrary.org/obo/MONDO_0020512 |
| T48 | 264-272 | Disease | denotes | Melanoma | http://purl.obolibrary.org/obo/MONDO_0005105 |
| T49 | 289-299 | Disease | denotes | vasculitis | http://purl.obolibrary.org/obo/MONDO_0018882 |
| T50 | 610-613 | Disease | denotes | MMF | http://purl.obolibrary.org/obo/MONDO_0018942 |
| T51 | 685-696 | Disease | denotes | Sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T52 | 1586-1589 | Disease | denotes | MMF | http://purl.obolibrary.org/obo/MONDO_0018942 |
| T53 | 1766-1769 | Disease | denotes | HLH | http://purl.obolibrary.org/obo/MONDO_0015540 |
| T54 | 1864-1867 | Disease | denotes | PID | http://purl.obolibrary.org/obo/MONDO_0000922 |
| T55 | 1876-1892 | Disease | denotes | immunodeficiency | http://purl.obolibrary.org/obo/MONDO_0021094 |
| T56 | 1894-1899 | Disease | denotes | B-ALL | http://purl.obolibrary.org/obo/MONDO_0020511 |
| T57 | 1901-1936 | Disease | denotes | B cell acute lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0004947|http://purl.obolibrary.org/obo/MONDO_0020511 |
| T59 | 1908-1936 | Disease | denotes | acute lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0004967 |
| T60 | 1914-1936 | Disease | denotes | lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0001018 |
| T61 | 1928-1936 | Disease | denotes | leukemia | http://purl.obolibrary.org/obo/MONDO_0005059 |
| T62 | 1938-1943 | Disease | denotes | T-ALL | http://purl.obolibrary.org/obo/MONDO_0004963|http://purl.obolibrary.org/obo/MONDO_0020512 |
| T64 | 1944-1979 | Disease | denotes | T cell acute lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0003540|http://purl.obolibrary.org/obo/MONDO_0004963 |
| T66 | 1951-1979 | Disease | denotes | acute lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0004967 |
| T67 | 1957-1979 | Disease | denotes | lymphoblastic leukemia | http://purl.obolibrary.org/obo/MONDO_0001018 |
| T68 | 1971-1979 | Disease | denotes | leukemia | http://purl.obolibrary.org/obo/MONDO_0005059 |
| T69 | 2082-2085 | Disease | denotes | HLH | http://purl.obolibrary.org/obo/MONDO_0015540 |
| T70 | 2086-2120 | Disease | denotes | hemophagocytic lymphohistiocytosis | http://purl.obolibrary.org/obo/MONDO_0015540 |
| T71 | 2122-2125 | Disease | denotes | MMF | http://purl.obolibrary.org/obo/MONDO_0018942 |
| T72 | 2216-2224 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T73 | 3095-3098 | Disease | denotes | HLH | http://purl.obolibrary.org/obo/MONDO_0015540 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T41 | 96-99 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 3 4 |
| T42 | 137-139 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T43 | 199-204 | http://purl.obolibrary.org/obo/PR_000001852 | denotes | CTLA4 |
| T44 | 252-253 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T45 | 273-278 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | Liver |
| T46 | 273-278 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | Liver |
| T47 | 314-320 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | Kidney |
| T48 | 314-320 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | Kidney |
| T49 | 314-320 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | Kidney |
| T50 | 397-400 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T51 | 401-406 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T52 | 457-460 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T53 | 461-466 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54 | 814-817 | http://purl.obolibrary.org/obo/CLO_0001007 | denotes | 380 |
| T55 | 886-888 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
| T56 | 1063-1068 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T57 | 1676-1678 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T58 | 1688-1691 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 3 4 |
| T59 | 1751-1754 | http://purl.obolibrary.org/obo/UBERON_0003081 | denotes | lpm |
| T60 | 1806-1812 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T61 | 1816-1820 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T62 | 1816-1820 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T63 | 1842-1851 | http://purl.obolibrary.org/obo/CL_0000034 | denotes | stem cell |
| T64 | 1894-1895 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T65 | 1901-1907 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
| T66 | 1944-1950 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T67 | 2174-2178 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 3, 4 |
| T68 | 2232-2233 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69 | 2799-2800 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T70 | 2912-2913 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T71 | 3125-3126 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72 | 3282-3283 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T16 | 194-197 | Chemical | denotes | PID | http://purl.obolibrary.org/obo/CHEBI_8066 |
| T17 | 284-288 | Chemical | denotes | ANCA | http://purl.obolibrary.org/obo/CHEBI_34507 |
| T18 | 480-494 | Chemical | denotes | mercaptopurine | http://purl.obolibrary.org/obo/CHEBI_50667 |
| T19 | 499-511 | Chemical | denotes | methotrexate | http://purl.obolibrary.org/obo/CHEBI_44185|http://purl.obolibrary.org/obo/CHEBI_50681 |
| T21 | 535-545 | Chemical | denotes | tacrolimus | http://purl.obolibrary.org/obo/CHEBI_61049|http://purl.obolibrary.org/obo/CHEBI_61057 |
| T23 | 558-570 | Chemical | denotes | azathioprine | http://purl.obolibrary.org/obo/CHEBI_2948 |
| T24 | 583-593 | Chemical | denotes | tacrolimus | http://purl.obolibrary.org/obo/CHEBI_61049|http://purl.obolibrary.org/obo/CHEBI_61057 |
| T26 | 595-608 | Chemical | denotes | mycophenolate | http://purl.obolibrary.org/obo/CHEBI_62932 |
| T27 | 610-613 | Chemical | denotes | MMF | http://purl.obolibrary.org/obo/CHEBI_8764 |
| T28 | 881-883 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T30 | 944-951 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T31 | 992-1000 | Chemical | denotes | Ferritin | http://purl.obolibrary.org/obo/CHEBI_82594 |
| T32 | 1432-1445 | Chemical | denotes | Dexamethasone | http://purl.obolibrary.org/obo/CHEBI_41879 |
| T33 | 1492-1502 | Chemical | denotes | tacrolimus | http://purl.obolibrary.org/obo/CHEBI_61049|http://purl.obolibrary.org/obo/CHEBI_61057 |
| T35 | 1531-1543 | Chemical | denotes | azathioprine | http://purl.obolibrary.org/obo/CHEBI_2948 |
| T36 | 1586-1589 | Chemical | denotes | MMF | http://purl.obolibrary.org/obo/CHEBI_8764 |
| T37 | 1602-1612 | Chemical | denotes | tacrolimus | http://purl.obolibrary.org/obo/CHEBI_61049|http://purl.obolibrary.org/obo/CHEBI_61057 |
| T39 | 1626-1636 | Chemical | denotes | prednisone | http://purl.obolibrary.org/obo/CHEBI_8382 |
| T40 | 1708-1710 | Chemical | denotes | O2 | http://purl.obolibrary.org/obo/CHEBI_15379 |
| T41 | 1816-1820 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T42 | 1864-1867 | Chemical | denotes | PID | http://purl.obolibrary.org/obo/CHEBI_8066 |
| T43 | 2000-2018 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
| T44 | 2050-2069 | Chemical | denotes | lopinavir/ritonavir | http://purl.obolibrary.org/obo/CHEBI_145924 |
| T45 | 2050-2059 | Chemical | denotes | lopinavir | http://purl.obolibrary.org/obo/CHEBI_31781 |
| T46 | 2060-2069 | Chemical | denotes | ritonavir | http://purl.obolibrary.org/obo/CHEBI_45409 |
| T47 | 2071-2073 | Chemical | denotes | O2 | http://purl.obolibrary.org/obo/CHEBI_15379 |
| T48 | 2074-2080 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T49 | 2122-2125 | Chemical | denotes | MMF | http://purl.obolibrary.org/obo/CHEBI_8764 |
| T50 | 2126-2139 | Chemical | denotes | mycophenolate | http://purl.obolibrary.org/obo/CHEBI_62932 |
| T51 | 3060-3073 | Chemical | denotes | Dexamethasone | http://purl.obolibrary.org/obo/CHEBI_41879 |
| T52 | 3303-3317 | Chemical | denotes | hydrocortisone | http://purl.obolibrary.org/obo/CHEBI_17650 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T20 | 222-246 | Phenotype | denotes | Myelodysplastic syndrome | http://purl.obolibrary.org/obo/HP_0002863 |
| T21 | 264-272 | Phenotype | denotes | Melanoma | http://purl.obolibrary.org/obo/HP_0002861 |
| T22 | 289-299 | Phenotype | denotes | vasculitis | http://purl.obolibrary.org/obo/HP_0002633 |
| T23 | 615-620 | Phenotype | denotes | Fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T24 | 650-655 | Phenotype | denotes | Cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T25 | 685-696 | Phenotype | denotes | Sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T26 | 723-730 | Phenotype | denotes | Dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T27 | 1876-1892 | Phenotype | denotes | immunodeficiency | http://purl.obolibrary.org/obo/HP_0002721 |
| T28 | 1903-1939 | Phenotype | denotes | cell acute lymphoblastic leukemia, T | http://purl.obolibrary.org/obo/HP_0006727 |
| T29 | 1944-1979 | Phenotype | denotes | T cell acute lymphoblastic leukemia | http://purl.obolibrary.org/obo/HP_0006727 |
| T30 | 2414-2419 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 0-84 | Sentence | denotes | Table 1 Clinical characteristics of immunocompromised children with COVID-19 disease |
| T58 | 85-107 | Sentence | denotes | Case # 1 2 3 4 5 6 7 8 |
| T59 | 108-149 | Sentence | denotes | Age (years) 15 13 12.6 9 6.7 11 12.6 14.8 |
| T60 | 150-172 | Sentence | denotes | Gender F M M M M M F M |
| T61 | 173-193 | Sentence | denotes | Primary disease HSCT |
| T62 | 194-221 | Sentence | denotes | PID (CTLA4 deficiency) HSCT |
| T63 | 222-251 | Sentence | denotes | Myelodysplastic syndrome HSCT |
| T64 | 252-300 | Sentence | denotes | B-ALL T-ALL Melanoma Liver Tx C-ANCA vasculitis. |
| T65 | 301-323 | Sentence | denotes | Hemodialysis Kidney Tx |
| T66 | 324-396 | Sentence | denotes | Immunosuppressive treatment/targeted therapy None (stopped for 1 month). |
| T67 | 397-407 | Sentence | denotes | CD4 cells: |
| T68 | 408-456 | Sentence | denotes | 216/ μL Ruxolitinib None (stopped for 2 months). |
| T69 | 457-467 | Sentence | denotes | CD4 cells: |
| T70 | 468-614 | Sentence | denotes | 30/ μL Oral mercaptopurine and methotrexate Trametinib Prednisone, tacrolimus Prednisone, azathioprine Prednisone, tacrolimus, mycophenolate (MMF) |
| T71 | 615-649 | Sentence | denotes | Fever Yes No Yes Yes No Yes Yes No |
| T72 | 650-684 | Sentence | denotes | Cough No No No Yes Yes Yes Yes Yes |
| T73 | 685-722 | Sentence | denotes | Sore throat No Yes No No No No Yes No |
| T74 | 723-755 | Sentence | denotes | Dyspnea Yes No No No No No No No |
| T75 | 756-771 | Sentence | denotes | Lymphocytes/mm3 |
| T76 | 772-822 | Sentence | denotes | (minimum value) 730 1210 520 340 2730 970 380 1620 |
| T77 | 823-836 | Sentence | denotes | D-dimer ng/mL |
| T78 | 837-880 | Sentence | denotes | (maximum value) 301 - 418 1143 370 - 1168 - |
| T79 | 881-931 | Sentence | denotes | IL-6 pg/mL (maximum value) 9.60 2.30 - 192 - - - - |
| T80 | 932-991 | Sentence | denotes | C- Reactive Protein (mg/L) 26.2 1.9 18.9 24.6 0.6 0.9 9 106 |
| T81 | 992-1062 | Sentence | denotes | Ferritin (mg/dl) Not done Not done 622 1534 Not done Not done 1270 553 |
| T82 | 1063-1081 | Sentence | denotes | Chest X-ray Normal |
| T83 | 1082-1091 | Sentence | denotes | (Previous |
| T84 | 1092-1286 | Sentence | denotes | lobectomy) Interstitial infiltrate Interstitial infiltrate Interstitial infiltrate Focal infiltrate Mild parahilar infiltrates Normal initially but focal infiltrate on evolution Focal infiltrate |
| T85 | 1287-1340 | Sentence | denotes | Required hospitalization Yes No No Yes No Yes Yes Yes |
| T86 | 1341-1355 | Sentence | denotes | Treatment HCQ* |
| T87 | 1356-1401 | Sentence | denotes | Remdesivir** IS withdrawal HCQ* IS withdrawal |
| T88 | 1402-1406 | Sentence | denotes | HCQ* |
| T89 | 1407-1419 | Sentence | denotes | Remdesivir** |
| T90 | 1420-1431 | Sentence | denotes | Tocilizumab |
| T91 | 1432-1555 | Sentence | denotes | Dexamethasone*** Trametinib withdrawal Reduction in IS (50% tacrolimus reduction) Reduction in IS (azathioprine withdrawal) |
| T92 | 1556-1563 | Sentence | denotes | LPV/Rtv |
| T93 | 1564-1646 | Sentence | denotes | HCQ* Reduction in IS (MMF withdrawal, tacrolimus decrease and prednisone increase) |
| T94 | 1647-1651 | Sentence | denotes | HCQ* |
| T95 | 1652-1693 | Sentence | denotes | Duration of stay (days) 11 - - 28 - 3 4 2 |
| T96 | 1694-1803 | Sentence | denotes | Complications O2 requirement on nasal cannula (maximun 2 lpm) None None HLH-like syndrome None None None None |
| T97 | 1804-1900 | Sentence | denotes | F female, M male, HSCT: hematopoietic stem cell transplant, PID primary immunodeficiency, B-ALL: |
| T98 | 1901-2121 | Sentence | denotes | B cell acute lymphoblastic leukemia, T-ALL T cell acute lymphoblastic leukemia, Tx transplant, HCQ hydroxychloroquine, IS immunosuppressors, LPV/Rtv lopinavir/ritonavir, O2 oxygen; HLH hemophagocytic lymphohistiocytosis. |
| T99 | 2122-2139 | Sentence | denotes | MMF mycophenolate |
| T100 | 2140-2301 | Sentence | denotes | *HCQ was initiated in patients 1, 3, 4, and 8 once confirmation of positive SARS-CoV-2 with a nasal swab was obtained (< 24 h from consultation at our hospital). |
| T101 | 2302-2399 | Sentence | denotes | Patients 1, 3, and 8 attended the Emergency Department in the first 24 h after onset of symptoms. |
| T102 | 2400-2566 | Sentence | denotes | Patient 4 had fever of 4 days when the nasal swab was obtained, and patient 7 received 5 days of LPV/Rtv initially and due to persistent symptoms was switched to HCQ. |
| T103 | 2567-2771 | Sentence | denotes | According to our guidelines, the oral dose was as follows: HCQ 6.5 mg/kg/day (dosing q12 h) in 6 year-olds, and HCQ 10 mg/kg/day (dosing q12 h) in children > 6 years (maximum daily dose 400 mg) for 5 days |
| T104 | 2772-3056 | Sentence | denotes | **Remdesivir was given for a total of 7 days on patient 1 and 10 days on patient 4, at an intravenous dose of 5 mg/kg on day 1, followed by a maintenance dose of 2.5 mg/kg from days 2 to 9 (patients <40 kg) or 200 mg/iv on day 1 followed by 100 mg/iv on days 2-9 (for patients >40 kg) |
| T105 | 3057-3144 | Sentence | denotes | ***Dexamethasone was given as per the HLH 2004 trial, although with a shorter duration: |
| T106 | 3145-3317 | Sentence | denotes | 10 mg/m2/day for 7 days, followed by 5 mg/m2/day for another 7 days, followed by 2.5 mg/m2 for 7 days and 1.25 mg/m2 for 2 days and then a tapering dose with hydrocortisone |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T91 | 68-76 | SP_7 | denotes | COVID-19 |
| T92 | 199-204 | PR:000001852 | denotes | CTLA4 |
| T93 | 222-237 | CL:0000763 | denotes | Myelodysplastic |
| T97 | 1420-1431 | DG_35 | denotes | Tocilizumab |
| T98 | 1432-1445 | CHEBI:41879;CHEBI:41879 | denotes | Dexamethasone |
| T99 | 1531-1543 | CHEBI:2948;CHEBI:2948 | denotes | azathioprine |
| T100 | 1602-1612 | CHEBI:15891;CHEBI:15891 | denotes | tacrolimus |
| T101 | 1626-1636 | CHEBI:8382;CHEBI:8382 | denotes | prednisone |
| T102 | 1828-1841 | GO:0030097;CL:0000037 | denotes | hematopoietic |
| T103 | 1842-1851 | CL:0000037 | denotes | stem cell |
| T104 | 1901-1907 | CL:0000236 | denotes | B cell |
| T105 | 1944-1950 | CL:0000084 | denotes | T cell |
| T106 | 2000-2018 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
| T107 | 2023-2040 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppressors |
| T108 | 2050-2059 | DG_23 | denotes | lopinavir |
| T109 | 2060-2069 | DG_30 | denotes | ritonavir |
| T110 | 2071-2073 | CHEBI:15379;CHEBI:15379 | denotes | O2 |
| T111 | 2086-2100 | GO:0030097 | denotes | hemophagocytic |
| T112 | 2126-2139 | CHEBI:62932;CHEBI:62932 | denotes | mycophenolate |
| T113 | 2216-2226 | SP_7 | denotes | SARS-CoV-2 |
| T114 | 2234-2239 | UBERON:0000004 | denotes | nasal |
| T115 | 2439-2444 | UBERON:0001707 | denotes | nasal |
| T116 | 2445-2449 | UBERON:0001823 | denotes | swab |
| T117 | 2600-2604 | UBERON:0000165 | denotes | oral |
| T118 | 2774-2784 | DG_28 | denotes | Remdesivir |
| T119 | 3060-3073 | CHEBI:41879;CHEBI:41879 | denotes | Dexamethasone |
| T120 | 3303-3317 | CHEBI:24751;CHEBI:24751 | denotes | hydrocortisone |
| T78 | 43-51 | DG_23 | denotes | ompromis |
| T79 | 52-63 | DG_30 | denotes | d children |
| T80 | 65-67 | CHEBI:15379;CHEBI:15379 | denotes | th |
| T81 | 80-94 | GO:0030097 | denotes | ease Case # 1 |
| T82 | 120-133 | CHEBI:62932;CHEBI:62932 | denotes | 15 13 12.6 9 |
| T83 | 209-219 | SP_7 | denotes | ciency) HS |
| T84 | 227-232 | UBERON:0000004 | denotes | dyspl |
| T85 | 432-437 | UBERON:0001707 | denotes | (sto |
| T86 | 438-442 | UBERON:0001823 | denotes | ped |
| T87 | 595-599 | UBERON:0000165 | denotes | myco |
| T88 | 764-774 | DG_28 | denotes | tes/mm3 (m |
| T89 | 1054-1067 | CHEBI:41879;CHEBI:41879 | denotes | 1270 553 Ches |
| T90 | 1297-1312 | CHEBI:35350;CHEBI:35350 | denotes | ospitalization |
| T95220 | 1378-1386 | SP_7 | denotes | awal HCQ |
| T76668 | 1405-1410 | PR:000001852 | denotes | * Rem |
| T83378 | 1428-1443 | CL:0000763 | denotes | mab Dexamethaso |
| T95008 | 1496-1508 | CL:0000542 | denotes | olimus reduc |
| T45414 | 1589-1599 | DG_28 | denotes | withdrawa |
| T54245 | 1622-1632 | DG_28 | denotes | and predni |
| T94900 | 1635-1646 | DG_35 | denotes | e increase) |
| T76258 | 1647-1660 | CHEBI:41879;CHEBI:41879 | denotes | HCQ* Duration |
| T95049 | 1681-1693 | CHEBI:2948;CHEBI:2948 | denotes | - 28 - 3 4 2 |
| T71044 | 1755-1764 | CHEBI:15891;CHEBI:15891 | denotes | None Non |
| T41068 | 1778-1788 | CHEBI:8382;CHEBI:8382 | denotes | drome None |
| T55685 | 1828-1841 | GO:0030097;CL:0000037 | denotes | hematopoietic |
| T53406 | 1842-1851 | CL:0000037 | denotes | stem cell |
| T50125 | 1901-1907 | CL:0000236 | denotes | B cell |
| T74346 | 1944-1950 | CL:0000084 | denotes | T cell |
| T78965 | 2000-2018 | CHEBI:5801;DG_20;CHEBI:5801 | denotes | hydroxychloroquine |
| T93758 | 2023-2040 | CHEBI:35705;CHEBI:35705 | denotes | immunosuppressors |
| T25906 | 2050-2059 | DG_23 | denotes | lopinavir |
| T85834 | 2060-2069 | DG_30 | denotes | ritonavir |
| T87655 | 2071-2073 | CHEBI:15379;CHEBI:15379 | denotes | O2 |
| T74525 | 2086-2100 | GO:0030097 | denotes | hemophagocytic |
| T46160 | 2126-2139 | CHEBI:62932;CHEBI:62932 | denotes | mycophenolate |
| T4239 | 2216-2226 | SP_7 | denotes | SARS-CoV-2 |
| T71468 | 2234-2239 | UBERON:0000004 | denotes | nasal |
| T51839 | 2439-2444 | UBERON:0001707 | denotes | nasal |
| T14851 | 2445-2449 | UBERON:0001823 | denotes | swab |
| T13016 | 2600-2604 | UBERON:0000165 | denotes | oral |
| T62411 | 2774-2784 | DG_28 | denotes | Remdesivir |
| T85530 | 3060-3073 | CHEBI:41879;CHEBI:41879 | denotes | Dexamethasone |
| T80219 | 3303-3317 | CHEBI:24751;CHEBI:24751 | denotes | hydrocortisone |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 132 | 199-204 | Gene | denotes | CTLA4 | Gene:1493 |
| 133 | 397-400 | Gene | denotes | CD4 | Gene:920 |
| 134 | 457-460 | Gene | denotes | CD4 | Gene:920 |
| 135 | 881-885 | Gene | denotes | IL-6 | Gene:3569 |
| 136 | 932-951 | Gene | denotes | C- Reactive Protein | Gene:1401 |
| 137 | 416-427 | Chemical | denotes | Ruxolitinib | MESH:C540383 |
| 138 | 480-494 | Chemical | denotes | mercaptopurine | MESH:D015122 |
| 139 | 499-511 | Chemical | denotes | methotrexate | MESH:D008727 |
| 140 | 512-522 | Chemical | denotes | Trametinib | MESH:C560077 |
| 141 | 523-533 | Chemical | denotes | Prednisone | MESH:D011241 |
| 142 | 535-545 | Chemical | denotes | tacrolimus | MESH:D016559 |
| 143 | 546-556 | Chemical | denotes | Prednisone | MESH:D011241 |
| 144 | 558-570 | Chemical | denotes | azathioprine | MESH:D001379 |
| 145 | 571-581 | Chemical | denotes | Prednisone | MESH:D011241 |
| 146 | 583-593 | Chemical | denotes | tacrolimus | MESH:D016559 |
| 147 | 595-608 | Chemical | denotes | mycophenolate | MESH:D009173 |
| 148 | 610-613 | Chemical | denotes | MMF | MESH:D009173 |
| 149 | 1351-1354 | Chemical | denotes | HCQ | MESH:D006886 |
| 150 | 1356-1366 | Chemical | denotes | Remdesivir | MESH:C000606551 |
| 151 | 1383-1386 | Chemical | denotes | HCQ | MESH:D006886 |
| 152 | 1391-1405 | Chemical | denotes | withdrawal HCQ | |
| 153 | 1407-1417 | Chemical | denotes | Remdesivir | MESH:C000606551 |
| 154 | 1420-1445 | Chemical | denotes | Tocilizumab Dexamethasone | |
| 155 | 1449-1459 | Chemical | denotes | Trametinib | MESH:C560077 |
| 156 | 1492-1502 | Chemical | denotes | tacrolimus | MESH:D016559 |
| 157 | 1531-1543 | Chemical | denotes | azathioprine | MESH:D001379 |
| 158 | 1602-1612 | Chemical | denotes | tacrolimus | MESH:D016559 |
| 159 | 1626-1636 | Chemical | denotes | prednisone | MESH:D011241 |
| 160 | 1708-1710 | Chemical | denotes | O2 | MESH:D010100 |
| 161 | 615-620 | Disease | denotes | Fever | MESH:D005334 |
| 162 | 650-655 | Disease | denotes | Cough | MESH:D003371 |
| 163 | 723-730 | Disease | denotes | Dyspnea | MESH:D004417 |
| 166 | 54-62 | Species | denotes | children | Tax:9606 |
| 167 | 68-76 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 178 | 1996-2018 | Chemical | denotes | HCQ hydroxychloroquine | |
| 179 | 2042-2049 | Chemical | denotes | LPV/Rtv | |
| 180 | 2050-2069 | Chemical | denotes | lopinavir/ritonavir | MESH:C558899 |
| 181 | 2071-2080 | Chemical | denotes | O2 oxygen | MESH:D010100 |
| 182 | 2122-2125 | Chemical | denotes | MMF | MESH:D009173 |
| 183 | 2126-2139 | Chemical | denotes | mycophenolate | MESH:D009173 |
| 184 | 1864-1892 | Disease | denotes | PID primary immunodeficiency | MESH:D000081207 |
| 185 | 1914-1936 | Disease | denotes | lymphoblastic leukemia | MESH:D054198 |
| 186 | 1938-1979 | Disease | denotes | T-ALL T cell acute lymphoblastic leukemia | MESH:D054218 |
| 187 | 2082-2120 | Disease | denotes | HLH hemophagocytic lymphohistiocytosis | MESH:D051359 |
| 200 | 2162-2170 | Species | denotes | patients | Tax:9606 |
| 201 | 2216-2226 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 202 | 2302-2310 | Species | denotes | Patients | Tax:9606 |
| 203 | 2400-2407 | Species | denotes | Patient | Tax:9606 |
| 204 | 2468-2475 | Species | denotes | patient | Tax:9606 |
| 205 | 2714-2722 | Species | denotes | children | Tax:9606 |
| 206 | 2141-2144 | Chemical | denotes | HCQ | MESH:D006886 |
| 207 | 2497-2504 | Chemical | denotes | LPV/Rtv | |
| 208 | 2562-2565 | Chemical | denotes | HCQ | MESH:D006886 |
| 209 | 2626-2629 | Chemical | denotes | HCQ | MESH:D006886 |
| 210 | 2679-2682 | Chemical | denotes | HCQ | MESH:D006886 |
| 211 | 2414-2419 | Disease | denotes | fever | MESH:D005334 |
| 217 | 2820-2827 | Species | denotes | patient | Tax:9606 |
| 218 | 2845-2852 | Species | denotes | patient | Tax:9606 |
| 219 | 2962-2970 | Species | denotes | patients | Tax:9606 |
| 220 | 3040-3048 | Species | denotes | patients | Tax:9606 |
| 221 | 2774-2784 | Chemical | denotes | Remdesivir | MESH:C000606551 |
| 223 | 3060-3073 | Chemical | denotes | Dexamethasone | MESH:D003907 |