PMC:7454539 / 2821-3812
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T12 | 588-592 | Body_part | denotes | neck | http://purl.org/sig/ont/fma/fma7155 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 588-592 | Body_part | denotes | neck | http://purl.obolibrary.org/obo/UBERON_0000974 |
| T13 | 720-730 | Body_part | denotes | extensions | http://purl.obolibrary.org/obo/UBERON_2000106 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T19 | 50-62 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T20 | 188-207 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T21 | 315-323 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T22 | 407-409 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T23 | 569-578 | Disease | denotes | emphysema | http://purl.obolibrary.org/obo/MONDO_0004849 |
| T24 | 865-877 | Disease | denotes | pneumothorax | http://purl.obolibrary.org/obo/MONDO_0002076 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T32 | 14-18 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T33 | 14-18 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T34 | 24-25 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T35 | 108-109 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T36 | 354-355 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 588-592 | http://www.ebi.ac.uk/efo/EFO_0000967 | denotes | neck |
| T38 | 594-595 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T39 | 847-848 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T11 | 14-18 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T12 | 230-234 | Chemical | denotes | PEEP | http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683 |
| T14 | 255-257 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
| T15 | 272-283 | Chemical | denotes | Doxycycline | http://purl.obolibrary.org/obo/CHEBI_50845 |
| T16 | 778-784 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28 | 0-149 | Sentence | denotes | A 68-year-old male with a past medical history of hypertension and hypercholesterolaemia, was admitted with a history of dyspnoea, myalgia and cough. |
| T29 | 150-297 | Sentence | denotes | He was similarly found to have type-1 respiratory failure, CPAP was instituted (PEEP of 8 FiO2 0.4), and Co-Amoxiclav and Doxycycline administered. |
| T30 | 298-348 | Sentence | denotes | The diagnosis of COVID-19 was confirmed by RT-PCR. |
| T31 | 349-486 | Sentence | denotes | Over a period of 13 days, despite increased CPAP support, he continued to deteriorate and required intubation and mechanical ventilation. |
| T32 | 487-593 | Sentence | denotes | Post-intubation CXR demonstrated bilateral pulmonary infiltrates and subcutaneous emphysema into the neck. |
| T33 | 594-773 | Sentence | denotes | A subsequent CT scan demonstrated widespread pneumomediastinum with significant subcutaneous, retrocrural and retroperitoneal extensions, with no evidence of visceral perforation. |
| T34 | 774-897 | Sentence | denotes | His oxygen requirements increased the following day and CXR demonstrated a new right-sided pneumothorax requiring drainage. |
| T35 | 898-991 | Sentence | denotes | The patient clinically improved and serial CXR confirmed resolution of the pneumomediastinum. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T18 | 50-62 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T19 | 121-129 | Phenotype | denotes | dyspnoea | http://purl.obolibrary.org/obo/HP_0002094 |
| T20 | 131-138 | Phenotype | denotes | myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
| T21 | 143-148 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T22 | 188-207 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T23 | 530-551 | Phenotype | denotes | pulmonary infiltrates | http://purl.obolibrary.org/obo/HP_0002113 |
| T24 | 569-578 | Phenotype | denotes | emphysema | http://purl.obolibrary.org/obo/HP_0002097 |
| T25 | 639-656 | Phenotype | denotes | pneumomediastinum | http://purl.obolibrary.org/obo/HP_0025421 |
| T26 | 865-877 | Phenotype | denotes | pneumothorax | http://purl.obolibrary.org/obo/HP_0002107 |
| T27 | 973-990 | Phenotype | denotes | pneumomediastinum | http://purl.obolibrary.org/obo/HP_0025421 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 70 | 902-909 | Species | denotes | patient | Tax:9606 |
| 71 | 255-267 | Chemical | denotes | Co-Amoxiclav | MESH:D019980 |
| 72 | 272-283 | Chemical | denotes | Doxycycline | MESH:D004318 |
| 73 | 778-784 | Chemical | denotes | oxygen | MESH:D010100 |
| 74 | 50-62 | Disease | denotes | hypertension | MESH:D006973 |
| 75 | 67-88 | Disease | denotes | hypercholesterolaemia | |
| 76 | 121-129 | Disease | denotes | dyspnoea | MESH:D004417 |
| 77 | 131-138 | Disease | denotes | myalgia | MESH:D063806 |
| 78 | 143-148 | Disease | denotes | cough | MESH:D003371 |
| 79 | 188-207 | Disease | denotes | respiratory failure | MESH:D012131 |
| 80 | 315-323 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 81 | 530-551 | Disease | denotes | pulmonary infiltrates | MESH:D017254 |
| 82 | 569-578 | Disease | denotes | emphysema | MESH:D004646 |
| 83 | 865-877 | Disease | denotes | pneumothorax | MESH:D011030 |
testtesttest
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T16 | 14-18 | Body_part | denotes | male | http://purl.obolibrary.org/obo/UBERON_0003101 |
| T17 | 588-592 | Body_part | denotes | neck | http://purl.obolibrary.org/obo/UBERON_0000974 |
| T18 | 720-730 | Body_part | denotes | extensions | http://purl.obolibrary.org/obo/UBERON_2000106 |