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PMC:7454539 / 2811-3812 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 598-602 Body_part denotes neck http://purl.org/sig/ont/fma/fma7155

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T12 598-602 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T13 730-740 Body_part denotes extensions http://purl.obolibrary.org/obo/UBERON_2000106

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 60-72 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T20 198-217 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T21 325-333 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 417-419 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T23 579-588 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T24 875-887 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 10-11 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T32 24-28 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T33 24-28 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T34 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 118-119 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 364-365 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 598-602 http://www.ebi.ac.uk/efo/EFO_0000967 denotes neck
T38 604-605 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 857-858 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 24-28 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T12 240-244 Chemical denotes PEEP http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683
T14 265-267 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T15 282-293 Chemical denotes Doxycycline http://purl.obolibrary.org/obo/CHEBI_50845
T16 788-794 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-9 Sentence denotes Patient 2
T28 10-159 Sentence denotes A 68-year-old male with a past medical history of hypertension and hypercholesterolaemia, was admitted with a history of dyspnoea, myalgia and cough.
T29 160-307 Sentence denotes He was similarly found to have type-1 respiratory failure, CPAP was instituted (PEEP of 8 FiO2 0.4), and Co-Amoxiclav and Doxycycline administered.
T30 308-358 Sentence denotes The diagnosis of COVID-19 was confirmed by RT-PCR.
T31 359-496 Sentence denotes Over a period of 13 days, despite increased CPAP support, he continued to deteriorate and required intubation and mechanical ventilation.
T32 497-603 Sentence denotes Post-intubation CXR demonstrated bilateral pulmonary infiltrates and subcutaneous emphysema into the neck.
T33 604-783 Sentence denotes A subsequent CT scan demonstrated widespread pneumomediastinum with significant subcutaneous, retrocrural and retroperitoneal extensions, with no evidence of visceral perforation.
T34 784-907 Sentence denotes His oxygen requirements increased the following day and CXR demonstrated a new right-sided pneumothorax requiring drainage.
T35 908-1001 Sentence denotes The patient clinically improved and serial CXR confirmed resolution of the pneumomediastinum.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T18 60-72 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T19 131-139 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T20 141-148 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T21 153-158 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T22 198-217 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T23 540-561 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T24 579-588 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T25 649-666 Phenotype denotes pneumomediastinum http://purl.obolibrary.org/obo/HP_0025421
T26 875-887 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T27 983-1000 Phenotype denotes pneumomediastinum http://purl.obolibrary.org/obo/HP_0025421

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
55 0-7 Species denotes Patient Tax:9606
70 912-919 Species denotes patient Tax:9606
71 265-277 Chemical denotes Co-Amoxiclav MESH:D019980
72 282-293 Chemical denotes Doxycycline MESH:D004318
73 788-794 Chemical denotes oxygen MESH:D010100
74 60-72 Disease denotes hypertension MESH:D006973
75 77-98 Disease denotes hypercholesterolaemia
76 131-139 Disease denotes dyspnoea MESH:D004417
77 141-148 Disease denotes myalgia MESH:D063806
78 153-158 Disease denotes cough MESH:D003371
79 198-217 Disease denotes respiratory failure MESH:D012131
80 325-333 Disease denotes COVID-19 MESH:C000657245
81 540-561 Disease denotes pulmonary infiltrates MESH:D017254
82 579-588 Disease denotes emphysema MESH:D004646
83 875-887 Disease denotes pneumothorax MESH:D011030