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PMC:7454258 / 3490-15765 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T60521 1256-1259 Body_part denotes gut http://purl.org/sig/ont/fma/fma7199
T17801 5886-5891 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T78043 9210-9215 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 1113-1121 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T8 1125-1136 Disease denotes prediabetes http://purl.obolibrary.org/obo/MONDO_0006920
T9 1209-1232 Disease denotes cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0004995
T10 1716-1724 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1726-1750 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T12 2053-2060 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T13 2101-2108 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T14 2183-2190 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T15 2636-2644 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T16 2829-2832 Disease denotes DHS http://purl.obolibrary.org/obo/MONDO_0008689|http://purl.obolibrary.org/obo/MONDO_0010575|http://purl.obolibrary.org/obo/MONDO_0044876
T19 2978-3002 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T20 3004-3012 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 3149-3157 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 5939-5942 Disease denotes HHS http://purl.obolibrary.org/obo/MONDO_0008897|http://purl.obolibrary.org/obo/MONDO_0011549
T24 10557-10560 Disease denotes ARS http://purl.obolibrary.org/obo/MONDO_0014648

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T71710 1256-1259 http://purl.obolibrary.org/obo/UBERON_0001007 denotes gut
T61978 1256-1259 http://purl.obolibrary.org/obo/UBERON_0001555 denotes gut
T71193 1256-1259 http://www.ebi.ac.uk/efo/EFO_0000834 denotes gut
T16486 1518-1519 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21392 2227-2233 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T30928 2303-2306 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T874 2414-2417 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T30576 2866-2869 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T95960 3346-3347 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50803 3662-3672 http://purl.obolibrary.org/obo/UBERON_0001456 denotes facing the
T34832 4186-4193 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T65051 4248-4254 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T95518 4336-4338 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T13054 4405-4408 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T44956 4857-4862 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T13173 4867-4873 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T26497 5067-5068 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81747 5302-5305 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T2531 5708-5713 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T39976 5776-5777 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38260 5808-5818 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T9634 5886-5891 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T15925 5886-5891 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T54730 5922-5927 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T31232 5944-5952 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T99974 6063-6073 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T84136 6106-6109 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T49931 6687-6700 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T22028 7339-7340 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14258 7471-7475 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T27952 7603-7604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56946 7641-7646 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T94130 8053-8054 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79330 9210-9215 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T91429 9210-9215 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T47020 9361-9362 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T97091 9429-9430 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T73913 9481-9482 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57820 9594-9595 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4507 9655-9656 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T63861 9699-9700 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13949 9751-9752 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T35581 10587-10592 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T70114 11338-11339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25781 11736-11737 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 2904-2907 Chemical denotes EPA http://purl.obolibrary.org/obo/CHEBI_28364
T3 5422-5424 Chemical denotes VA http://purl.obolibrary.org/obo/CHEBI_75008
T4 5939-5942 Chemical denotes HHS http://purl.obolibrary.org/obo/CHEBI_88937
T5 7101-7105 Chemical denotes SNAP http://purl.obolibrary.org/obo/CHEBI_77702
T6 7216-7218 Chemical denotes VA http://purl.obolibrary.org/obo/CHEBI_75008
T7 11057-11061 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T35821 497-510 http://purl.obolibrary.org/obo/GO_0006412 denotes translational
T82166 3489-3502 http://purl.obolibrary.org/obo/GO_0006412 denotes translational
T67013 8688-8701 http://purl.obolibrary.org/obo/GO_0006412 denotes translational

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
16 1090-1095 Disease denotes obese MESH:D009765
17 1113-1121 Disease denotes diabetes MESH:D003920
18 1209-1232 Disease denotes cardiovascular diseases MESH:D002318
19 1242-1249 Disease denotes cancers MESH:D009369
21 1726-1750 Disease denotes coronavirus disease 2019 MESH:C000657245
29 1847-1863 Disease denotes chronic diseases MESH:D002908
30 2053-2060 Disease denotes obesity MESH:D009765
31 2132-2148 Disease denotes chronic diseases MESH:D002908
32 2183-2190 Disease denotes obesity MESH:D009765
33 2554-2570 Disease denotes chronic diseases MESH:D002908
34 2636-2644 Disease denotes diabetes MESH:D003920
35 2829-2832 Disease denotes DHS MESH:C566369
39 2978-3002 Disease denotes coronavirus disease 2019 MESH:C000657245
40 3004-3012 Disease denotes COVID-19 MESH:C000657245
41 3149-3157 Disease denotes COVID-19 MESH:C000657245
44 4248-4254 Species denotes humans Tax:9606
45 4857-4862 Species denotes human Tax:9606
48 5708-5713 Species denotes Human Tax:9606
49 5922-5927 Species denotes Human Tax:9606
51 7641-7646 Species denotes human Tax:9606
53 9694-9697 Disease denotes NIN
55 10587-10592 Species denotes Human Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T26 0-17 Sentence denotes Executive Summary
T27 19-23 Sentence denotes Aims
T28 24-133 Sentence denotes This white paper aims to evaluate key issues relevant to federal nutrition research, including the following:
T29 134-269 Sentence denotes The mounting diet-related health burdens and corresponding economic, health equity, national security, and sustainability implications;
T30 270-372 Sentence denotes The current diverse federal nutrition research landscape and existing mechanisms for its coordination;
T31 373-535 Sentence denotes The opportunities for new nutrition-related discoveries in fundamental, clinical, public health, food and agricultural, and translational scientific research; and
T32 536-686 Sentence denotes The best strategies to further strengthen and coordinate federal nutrition research, including advantages, disadvantages, and potential paths forward.
T33 687-957 Sentence denotes This effort, informed by extensive background research and interviews, is intended to invite comment and discussion from all key stakeholders and help lay the foundation for accelerated scientific advances in nutrition to improve and sustain the health of all Americans.
T34 959-969 Sentence denotes The burden
T35 970-1041 Sentence denotes Diet-related illnesses are the leading source of poor health in the US.
T36 1042-1170 Sentence denotes Nearly 3 in 4 American adults are overweight or obese, and 1 in 2 have diabetes or prediabetes—and these rates continue to rise.
T37 1171-1293 Sentence denotes Poor nutrition further contributes to cardiovascular diseases, several cancers, poor gut health, and many other disorders.
T38 1294-1465 Sentence denotes Beyond effects on health, these diet-related diseases create enormous strains on productivity, health care spending, health disparities, and military readiness (Figure 1).
T39 1466-1572 Sentence denotes Our food system also strains our natural resources, a crucial new area of intersecting science and policy.
T40 1573-1715 Sentence denotes FIGURE 1 Examples of identified diet-related burdens that could be addressed by more coordinated and strengthened federal nutrition research.
T41 1716-1751 Sentence denotes COVID-19, coronavirus disease 2019.
T42 1752-1804 Sentence denotes Graphic design support courtesy of Ink&Pixel Agency.
T43 1805-1980 Sentence denotes Profound disparities in both diet-related chronic diseases and food insecurity, for example, are experienced by low-income, rural, minority, and other underserved populations.
T44 1981-2100 Sentence denotes Nearly 3 in 4 young Americans do not qualify for military service, with obesity being the leading medical disqualifier.
T45 2101-2257 Sentence denotes Obesity and other diet-related chronic diseases are endemic among veterans, while obesity and food insecurity coexist in many active-duty military families.
T46 2258-2462 Sentence denotes Over just 50 y, federal health care spending has risen from 5% to 28% of the federal budget, while US business (inflation-adjusted) spending on health care has increased from $79 billion to $1180 billion.
T47 2463-2571 Sentence denotes Approximately 85% of current health care spending is related to management of diet-related chronic diseases.
T48 2572-2918 Sentence denotes Estimated US government expenditures on direct medical care for diabetes alone (∼$160 billion/y) exceeds the annual budgets of many individual federal departments and agencies, including, among others, the Departments of Education (DoE), Homeland Security (DHS), and Justice (DoJ) and the NIH, CDC, Environmental Protection Agency (EPA), and FDA.
T49 2919-3014 Sentence denotes These strains have been further exposed and exacerbated by coronavirus disease 2019 (COVID-19).
T50 3015-3304 Sentence denotes This includes, for example, challenges related to hunger and food insecurity, major diet-related comorbidities for poor outcomes from COVID-19, insufficient evidence on optimal population resilience through better nutrition, and inadequate surveillance and coordination of our food system.
T51 3305-3513 Sentence denotes Addressing each of these issues requires a better understanding of their multilevel, interrelated biological, individual, social, and environmental determinants, and the corresponding translational solutions.
T52 3514-3680 Sentence denotes However, the current scope and pace of nutritional knowledge and discovery are insufficient to address the fundamental nutrition-related challenges facing the nation.
T53 3682-3703 Sentence denotes The current landscape
T54 3704-3798 Sentence denotes More than 10 federal departments and agencies currently invest in critical nutrition research.
T55 3799-3972 Sentence denotes Their relative investments in nutrition research have remained flat or declined over several decades—even as diet-related conditions and their societal burdens have climbed.
T56 3973-4123 Sentence denotes The NIH is the largest funder, with nutrition research investments estimated at $1.9 billion annually (∼5% of total NIH funding) for fiscal year 2019.
T57 4124-4255 Sentence denotes Approximately 25% of this funding (1.3% of total NIH funding) focuses on diet for the prevention or treatment of disease in humans.
T58 4256-4374 Sentence denotes This NIH nutrition research is conducted and supported across nearly all of the 27 current NIH institutes and centers.
T59 4375-4520 Sentence denotes Coordination of these efforts has been challenged by successively smaller NIH coordinating offices with decreasing stature, staff, and resources.
T60 4521-4695 Sentence denotes The USDA is the second-largest funder of US nutrition research, with an estimated annual budget of ∼$0.17 billion for fiscal year 2019 across several institutes and services.
T61 4696-4983 Sentence denotes The USDA works to provide Americans with safe, nutritious, and wholesome food and works to ensure the foods and beverages our nation produces optimally benefits human and animal health and to address food insecurity through the administration of 15 federal nutrition assistance programs.
T62 4984-5209 Sentence denotes Several structures work to improve research coordination within the USDA, although a recent USDA workshop and Government Accountability Office (GAO) report identified gaps and opportunities in nutrition research coordination.
T63 5210-5492 Sentence denotes Multiple other federal departments and agencies invest in nutrition research, including the CDC, FDA, Department of Defense (DoD), US Agency for International Development (USAID), Department of Veterans Affairs (VA), National Aeronautics and Space Administration (NASA), and others.
T64 5493-5641 Sentence denotes Consistent with this fragmented infrastructure, multiple major reports over 50 y have called for greater coordination of federal nutrition research.
T65 5642-6074 Sentence denotes Current coordination efforts include the Interagency Committee on Human Nutrition Research (ICHNR), which currently meets about twice a year to work on the following activities, among others: food and nutrition monitoring and surveillance, the joint USDA–Department of Health and Human Services (-HHS) activity to produce the Dietary Guidelines for Americans (DGAs) and certain regulatory, communication, and educational activities.
T66 6075-6208 Sentence denotes However, no concrete authority has been created to successfully harmonize and leverage the federal investments in nutrition research.
T67 6209-6555 Sentence denotes Overall, this white paper and several prior reports found these efforts to be important but insufficient to address current and rising diet-related disease burdens, food insecurity, health disparities, health care costs, challenges to military readiness, and intersections with food and agricultural production, supply chains, and sustainability.
T68 6557-6572 Sentence denotes The opportunity
T69 6573-6701 Sentence denotes Several specific priority areas in nutrition research have been identified by various federal and nongovernmental organizations.
T70 6702-6751 Sentence denotes However, most have not been adequately addressed.
T71 6752-6886 Sentence denotes Greater federal coordination and investment in nutrition research could accelerate discoveries across these critical areas (Figure 2).
T72 6887-6979 Sentence denotes FIGURE 2 Opportunities for enhanced federal nutrition research coordination and investment.
T73 6980-7251 Sentence denotes DGAs, Dietary Guidelines for Americans; DoD, Department of Defense; NASA, National Aeronautics and Space Administration; SNAP-Ed, USDA Supplemental Nutrition Assistance Program Education; USAID, US Agency for International Development; VA, Department of Veterans Affairs.
T74 7252-7304 Sentence denotes Graphic design support courtesy of Ink&Pixel Agency.
T75 7305-7433 Sentence denotes Several lines of evidence support a strong return on investment (ROI) for an expanded and coordinated nutrition research effort.
T76 7434-7791 Sentence denotes As stated by the FDA Commissioner in 2018 at the National Food Policy Conference, “Improvements in diet and nutrition offer us one of our greatest opportunities to have a profound and generational impact on human health .… The public health gains of such efforts would almost certainly dwarf any single medical innovation or intervention we could discover.”
T77 7793-7804 Sentence denotes The options
T78 7805-7997 Sentence denotes Any new federal nutrition research investment and coordination structure must leverage, harmonize, and catalyze the existing efforts being led across multiple federal departments and agencies.
T79 7998-8049 Sentence denotes Two major complementary strategies were identified:
T80 8050-8267 Sentence denotes 1) a new authority for robust cross-governmental coordination of nutrition research and other nutrition-related policy and 2) strengthened authority, investment, and coordination for nutrition research within the NIH.
T81 8268-8485 Sentence denotes Specific promising options to advance these 2 strategies were identified (Box 1); and for each option, potential advantages and disadvantages, executive and legislative considerations, and paths forward are discussed.
T82 8486-8714 Sentence denotes Improved coordination between federal departments and agencies conducting nutrition research was identified as having tremendous potential for accelerating essential basic, clinical, public health, and translational discoveries.
T83 8715-8870 Sentence denotes Increased authority, coordination, and funding for nutrition science within NIH was also identified as being essential for accelerating needed discoveries.
T84 8871-9046 Sentence denotes Appropriate efforts should leverage and amplify, not replace, compete with, or isolate existing nutrition research efforts across NIH, USDA, or other departments and agencies.
T85 9047-9231 Sentence denotes The cross-government strategy and within-NIH strategy were identified as complementary, with benefits accruing independently and further synergies to be gained by joint implementation.
T86 9232-9341 Sentence denotes Box 1 Promising cross-governmental and NIH options to strengthen and accelerate national nutrition research1
T87 9342-9428 Sentence denotes Cross-governmental A new Office of the National Director of Food and Nutrition (ONDFN)
T88 9429-9480 Sentence denotes A new US Global Nutrition Research Program (USGNRP)
T89 9481-9593 Sentence denotes A new Associate Director for Nutrition Science in the White House Office of Science and Technology Policy (OSTP)
T90 9594-9643 Sentence denotes A new US Task Force on Federal Nutrition Research
T91 9644-9698 Sentence denotes Within NIH A new National Institute of Nutrition (NIN)
T92 9699-9750 Sentence denotes A new National Center for Nutrition Research (NCNR)
T93 9751-9837 Sentence denotes A return of the Office of Nutrition Research (ONR) into the NIH Office of the Director
T94 9838-9900 Sentence denotes Development of new trans-NIH initiatives in nutrition research
T95 9901-10019 Sentence denotes Within USDA Increased investment in nutrition research across the USDA Research, Education, and Economics mission area
T96 10020-10083 Sentence denotes Expanded USDA research to improve public guidance and education
T97 10084-10164 Sentence denotes Innovative USDA research to strengthen benefits of nutrition assistance programs
T98 10165-10368 Sentence denotes 1 Additional relevant priorities to strengthen federal nutrition research within other departments and agencies, such as DoD, USAID, and FDA, were recognized and should be the subject of future reports.
T99 10370-10465 Sentence denotes Further complementary actions to accelerate federal nutrition research were identified at USDA.
T100 10466-10886 Sentence denotes First, to increase investment in nutrition research for the Agricultural Research Service (ARS) including its network of Human Nutrition Research Centers, the National Institute of Food and Agriculture (NIFA) extramural research programs, and the Economic Research Service (ERS) programs, which assesses demographic, social, informational, and economic determinants of dietary consumption and associated health outcomes.
T101 10887-11016 Sentence denotes Second, to expand USDA research that evaluates and improves major ongoing efforts for public guidance and education on nutrition.
T102 11017-11199 Sentence denotes And third, to build the robust evidence base and collaborations needed to strengthen the positive impacts of the ∼$100 billion/y federal investments in nutrition assistance programs.
T103 11201-11212 Sentence denotes Conclusions
T104 11213-11305 Sentence denotes This white paper identified many stark and growing national challenges related to nutrition.
T105 11306-11506 Sentence denotes Our research further documented a diversity of federal investments in nutrition research across departments and agencies, but with flat or declining funding and with suboptimal coordination authority.
T106 11507-11657 Sentence denotes The opportunities to be gained by greater coordination and investment in federal nutrition research are clear, with potential for large and rapid ROI.
T107 11658-11859 Sentence denotes This white paper identified and described 2 priority strategies, including 1) a new authority for cross-governmental coordination and 2) strengthened authority, investment, and coordination within NIH.
T108 11860-11921 Sentence denotes Additional important strategies were also identified at USDA.
T109 11922-12029 Sentence denotes All these strategies were found to be complementary, providing independent as well as synergistic benefits.
T110 12030-12275 Sentence denotes The identified specific options would help create the new leadership, strategic planning, coordination, and investment the nation requires to address the multiple nutrition-related challenges before us, and grasp the corresponding opportunities.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T82642 1076-1086 Phenotype denotes overweight http://purl.obolibrary.org/obo/HP_0025502
T30684 1209-1232 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T10054 2053-2060 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T6 2101-2108 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T7 2183-2190 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513