PMC:7454258 / 199857-207806 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1162-1168 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T2 1353-1362 Body_part denotes Stem Cell http://purl.org/sig/ont/fma/fma63368
T3 1358-1362 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T4 4020-4025 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T5 4083-4088 Body_part denotes BRAIN http://purl.org/sig/ont/fma/fma50801
T6 4531-4536 Body_part denotes BRAIN http://purl.org/sig/ont/fma/fma50801
T7 4757-4762 Body_part denotes BRAIN http://purl.org/sig/ont/fma/fma50801

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T54 4020-4025 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 132-133 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 780-781 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1353-1362 http://purl.obolibrary.org/obo/CL_0000034 denotes Stem Cell
T6 1492-1495 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 1614-1615 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 2271-2276 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T9 2300-2301 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 2523-2528 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T11 2578-2579 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2597-2598 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2652-2653 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2684-2685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2787-2797 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T16 2816-2817 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2860-2861 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 3055-3056 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 3203-3204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3655-3656 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3704-3714 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T22 3730-3735 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T23 3799-3804 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T24 3856-3861 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T25 4020-4025 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T26 4020-4025 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T27 4083-4088 http://purl.obolibrary.org/obo/UBERON_0000955 denotes BRAIN
T28 4083-4088 http://www.ebi.ac.uk/efo/EFO_0000302 denotes BRAIN
T29 4118-4119 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 4511-4514 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T31 4531-4536 http://purl.obolibrary.org/obo/UBERON_0000955 denotes BRAIN
T32 4531-4536 http://www.ebi.ac.uk/efo/EFO_0000302 denotes BRAIN
T33 4755-4756 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 4757-4762 http://purl.obolibrary.org/obo/UBERON_0000955 denotes BRAIN
T35 4757-4762 http://www.ebi.ac.uk/efo/EFO_0000302 denotes BRAIN
T36 4846-4847 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 5306-5307 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 5395-5398 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T39 5427-5428 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 5689-5690 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 5813-5814 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 5870-5871 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 5896-5897 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 5930-5935 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T45 6010-6011 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 6166-6167 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 6297-6298 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 6604-6605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 6645-6652 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T50 6761-6762 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 6909-6910 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 7085-7086 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 7187-7188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 7688-7695 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
881 2271-2287 Species denotes Human Microbiome Tax:646099
882 2523-2539 Species denotes Human Microbiome Tax:646099
883 3730-3746 Species denotes human microbiome Tax:646099
884 3799-3815 Species denotes Human Microbiome Tax:646099
885 3856-3872 Species denotes Human Microbiome Tax:646099
887 5620-5639 Disease denotes NIH's congressional MESH:D010300
889 5930-5935 Species denotes human Tax:9606
891 7472-7491 Disease denotes NIH's congressional MESH:D010300

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1097 0-49 Sentence denotes New trans-NIH initiative(s) in nutrition research
T1098 50-161 Sentence denotes Trans-NIH initiatives are efforts to promote collaborative research across NIH in a particular area of science.
T1099 162-266 Sentence denotes These initiatives can originate from the NIH Director; NIH institutes, centers, or offices; or Congress.
T1100 267-372 Sentence denotes Some of these initiatives engage with external stakeholders such as businesses and nonprofit foundations.
T1101 373-452 Sentence denotes The funding, leadership, and structures for trans-NIH initiatives tend to vary.
T1102 453-756 Sentence denotes Generally, trans-NIH programs utilize the same mechanisms of grant funding that NIH currently offers: research grants (R series), career development awards (K series), research training and fellowships (T & F series), program project/center grants (P series), and resource grants (various series) (333).
T1103 757-1471 Sentence denotes NIH currently supports a variety of broad-reaching programs that are trans-NIH in nature; examples include Biomedical Information Science and Technology Institute (BISTI), NIH Blueprint for Neuroscience Research, Research Supplements to Promote Diversity in Health-Related Research, Administrative Supplements to Existing NIH Grants and Cooperative Agreements, New and Early Stage Investigators Policies, Genome-Wide Association Studies, NIH Common Fund, NIH Basic Behavioral and Social Science Research Opportunity Network (OppNet), Presidential Early Career Award for Scientists and Engineers, Stem Cell Information (PECASE), and the Trans-NIH Countermeasures Against Chemical Threats (CounterACT) program (333).
T1104 1472-1590 Sentence denotes The NIH Common Fund has emerged as one approach to support trans-NIH programs and uses the same mechanisms of support.
T1105 1591-1812 Sentence denotes The NIH Common Fund is a specific component of the NIH budget and is managed by the Office of Strategic Coordination/Division of Program Coordination, Planning, and Strategic Coordination/Office of the NIH Director (329).
T1106 1813-2101 Sentence denotes Common Fund programs are short-term (usually ∼5 y), goal-driven strategic investments that are “intended to change paradigms, develop innovative tools and technologies, and/or provide fundamental foundations for research that can be used by the broad biomedical research community” (329).
T1107 2102-2246 Sentence denotes Then, an NIH institute, center, or office or multiple institutes, centers, and offices must continue the support of these time-limited programs.
T1108 2247-2380 Sentence denotes As one example, the NIH Human Microbiome Project was a trans-NIH initiative supported by the NIH Common Fund from 2007 to 2016 (334).
T1109 2381-2436 Sentence denotes This project aimed to expand science on the microbiome.
T1110 2437-2628 Sentence denotes Initially funded as an initiative of the NIH Roadmap for Biomedical Research, the NIH Human Microbiome Project was originally established as a 5-y project with a budget of $150 million (335).
T1111 2629-2780 Sentence denotes The project began with a “jumpstart” phase in 2007 and a set of grants was funded in mid-2009 and additional demonstration project grants were awarded.
T1112 2781-3022 Sentence denotes These activities were supported by a Data Analysis and Coordination Center and a set of additional grants was awarded for developing new technologies, new software tools, and studying the ethical, legal, and social implications of this work.
T1113 3023-3087 Sentence denotes The grantees worked together in a highly cooperative consortium.
T1114 3088-3277 Sentence denotes Ultimately, this 10-y $215 million project spanned >20 of the NIH institutes, centers, and offices and resulted in a >40-fold increase in nonproject investment in microbiome research (336).
T1115 3278-3398 Sentence denotes That is, individual or multiple institutes, centers, and offices used program announcements or request for applications.
T1116 3399-3586 Sentence denotes Some of these funding mechanisms were supported by the Common Fund and others were additional commitments by the participating NIH institutes, centers, and offices from their own budgets.
T1117 3587-3838 Sentence denotes The Trans-NIH Microbiome Working Group established in 2012 provided a forum for coordinating NIH extramural research activities related to the human microbiome and continues to coordinate this work after the NIH Human Microbiome Project was completed.
T1118 3839-4015 Sentence denotes Notably, the NIH Human Microbiome Project identified several potential priority areas around food and the microbiome, but these topics have not yet been systematically pursued.
T1119 4016-4311 Sentence denotes The Brain Research through Advancing Innovative Neurotechnologies (BRAIN) initiative is an example of a trans-NIH initiative (337), supported by staff within NIH and across federal working groups and providing funding for intramural and extramural research, training, and technology development.
T1120 4312-4526 Sentence denotes Between 2013 and 2019, this initiative supported >700 research projects totaling ∼$1.3 billion through support across the NIH, including appropriations through the 21st Century Cures Act (Public Law 114–255) (337).
T1121 4527-4630 Sentence denotes The BRAIN initiative is managed by 10 NIH institutes and centers, with coordination at multiple levels.
T1122 4631-4866 Sentence denotes Extramural program staff and institute and center directors meet regularly to integrate strategic planning, management, and a BRAIN Multi-Council Working Group and Neuroethics Working Group provide further input on a variety of issues.
T1123 4867-5056 Sentence denotes Another trans-NIH example is the All of US Research Program (Public Law 115–31), directly supported through annual appropriations from Congress ($1.5 billion over 10 y) (Public Law 115–31).
T1124 5057-5237 Sentence denotes This initiative, supported and overseen by NIH, arose from recommendations by the NIH's Precision Medicine Initiative Working Group of the Advisory Committee to the Director (338).
T1125 5238-5426 Sentence denotes The program staff are based in the NIH Office of the Director, with a Trans-NIH Liaisons Coordinating Team made up of scientific leaders from across NIH and has an external advisory panel.
T1126 5427-5688 Sentence denotes A potential trans-NIH program in Precision Nutrition is being considered as an NIH Common Fund program for fiscal year 2021 (131, 339), and the NIH Director included Precision Nutrition in the NIH's congressional budget justification for fiscal year 2021 (131).
T1127 5689-5771 Sentence denotes A new Program Director in the NIDDK ONR was hired in 2020 to lead this initiative.
T1128 5773-5783 Sentence denotes Advantages
T1129 5784-5812 Sentence denotes Legislation is not required.
T1130 5813-5963 Sentence denotes A trans-NIH initiative can help galvanize NIH to develop a coordinated approach to a specific topic on nutrition and human health (e.g., see Table 2).
T1131 5964-6165 Sentence denotes Such an effort would generally be preceded by a careful—and separately useful—review of relevant NIH leadership, staffing, funding, external advisory mechanisms, and collaborative approaches available.
T1132 6166-6296 Sentence denotes A trans-NIH initiative brings new strategic planning, working groups, funding opportunities, training, and technology development.
T1133 6297-6425 Sentence denotes A trans-NIH initiative is complementary to other NIH and cross-governmental strategies to strengthen federal nutrition research.
T1134 6426-6507 Sentence denotes Such initiatives can also help build new or enhanced public–private partnerships.
T1135 6509-6522 Sentence denotes Disadvantages
T1136 6523-6700 Sentence denotes The needs and opportunities across nutrition research are broad and complex, and a new trans-NIH initiative would cover 1 focused topic, such as, if funded, precision nutrition.
T1137 6701-6981 Sentence denotes Addressing the science gaps and opportunities for nutrition—a leading cause of disease in the US—will require greater and more sustained authority, coordination, resources, and collaboration than provided by a single initiative, especially one only limited to precision nutrition.
T1138 6982-7124 Sentence denotes Trans-NIH initiatives are generally time-limited, difficult to sustain, and not easily communicated to a broad range of external stakeholders.
T1139 7125-7316 Sentence denotes The long-term success of such initiatives can be dependent on a single leading NIH institute, center, and/or office to commit to carry that area of work forward after the initial investments.
T1140 7318-7330 Sentence denotes Path forward
T1141 7331-7540 Sentence denotes The NIH Director could propose new trans-NIH budget initiatives for Congress to review; as noted earlier, Precision Nutrition is proposed in NIH's congressional budget justification for fiscal year 2021 (131).
T1142 7541-7730 Sentence denotes Congress could authorize and appropriate funds for this proposed initiative or put forth support for another or additional trans-NIH initiative(s) focused on ≥1 areas of nutrition research.
T1143 7731-7827 Sentence denotes NIH institutes, centers, and offices can develop and collectively support trans-NIH initiatives.
T1144 7828-7949 Sentence denotes External support through the private and nongovernment sectors can also be mobilized through public–private partnerships.

2_test

Id Subject Object Predicate Lexical cue
32687145-19819907-2017942 2623-2626 19819907 denotes 335
32687145-30808411-2017943 3272-3275 30808411 denotes 336