PMC:7445716 / 9165-10279
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T15 | 481-486 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T16 | 900-905 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 481-486 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T8 | 900-905 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T112 | 13-16 | Disease | denotes | GBS | http://purl.obolibrary.org/obo/MONDO_0016218 |
| T113 | 64-72 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T114 | 126-134 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T115 | 203-212 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T116 | 265-272 | Disease | denotes | anosmia | http://purl.obolibrary.org/obo/MONDO_0010528 |
| T117 | 293-301 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T118 | 403-412 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T119 | 468-477 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T120 | 588-596 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T121 | 747-755 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T122 | 994-1002 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T123 | 1016-1025 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T124 | 1080-1088 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 180-182 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T57 | 251-256 | http://purl.obolibrary.org/obo/CLO_0001004 | denotes | 16/72 |
| T58 | 481-486 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T59 | 563-565 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T60 | 571-573 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
| T61 | 579-581 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T62 | 583-585 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T63 | 688-693 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T64 | 728-734 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T65 | 900-905 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 184 | 436-443 | Species | denotes | patien | Tax:9606 |
| 185 | 532-540 | Species | denotes | patient | Tax:9606 |
| 186 | 587-597 | Species | denotes | SARS-CoV- | Tax:2697049 |
| 187 | 718-726 | Species | denotes | patient | Tax:9606 |
| 188 | 746-756 | Species | denotes | SARS-CoV- | Tax:2697049 |
| 189 | 775-783 | Species | denotes | patient | Tax:9606 |
| 190 | 841-854 | Species | denotes | not specifie | Tax:32644 |
| 191 | 63-71 | Disease | denotes | COVID-1 | MESH:C000657245 |
| 192 | 125-133 | Disease | denotes | COVID-1 | MESH:C000657245 |
| 193 | 143-148 | Disease | denotes | feve | MESH:D005334 |
| 194 | 165-170 | Disease | denotes | coug | MESH:D003371 |
| 195 | 187-194 | Disease | denotes | dyspne | MESH:D004417 |
| 196 | 202-211 | Disease | denotes | pneumoni | MESH:D011014 |
| 197 | 234-241 | Disease | denotes | /ageusi | MESH:D000370 |
| 198 | 264-271 | Disease | denotes | /anosmi | MESH:D000857 |
| 199 | 292-300 | Disease | denotes | diarrhe | MESH:D003967 |
| 200 | 370-375 | Disease | denotes | feve | MESH:D005334 |
| 201 | 377-397 | Disease | denotes | respiratory symptom | MESH:D012818 |
| 202 | 402-411 | Disease | denotes | pneumoni | MESH:D011014 |
| 203 | 467-476 | Disease | denotes | pneumoni | MESH:D011014 |
| 204 | 993-1024 | Disease | denotes | COVID-19 interstitial pneumoni | MESH:C000657245 |
| 205 | 1079-1087 | Disease | denotes | COVID-1 | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T69 | 0-95 | Sentence | denotes | All reported GBS cases (n = 72) except two were symptomatic for COVID-19 with various severity. |
| T70 | 96-317 | Sentence | denotes | Most common manifestations of COVID-19 included fever (73.6%, 53/72), cough (72.2%, 52/72), dyspnea and/or pneumonia (63.8%, 46/72), hypo-/ageusia (22.2%, 16/72), hypo-/anosmia (20.8%, 15/72), and diarrhea (18.1%, 13/72). |
| T71 | 318-517 | Sentence | denotes | One of the two asymptomatic subjects never developed fever, respiratory symptoms, or pneumonia [10], whereas the other patient showed an asymptomatic pneumonia at chest computed tomography (CT) [12]. |
| T72 | 518-694 | Sentence | denotes | In all but six patients with available data [22, 24, 36, 44, 45, 52], SARS-CoV-2 RT-PCR with naso- or oropharyngeal swab or fecal exam was positive at first or following tests. |
| T73 | 695-767 | Sentence | denotes | Nevertheless, these six patients tested positive at SARS-CoV-2 serology. |
| T74 | 768-865 | Sentence | denotes | In four patients, the laboratory exam for the diagnostic confirmation was not specified [20, 40]. |
| T75 | 866-1052 | Sentence | denotes | Typical “ground glass” aspects at chest-CT or similar findings at CT, Magnetic Resonance Imaging (MRI) or X-ray compatible with COVID-19 interstitial pneumonia were reported in 40 cases. |
| T76 | 1053-1114 | Sentence | denotes | The detailed therapies for COVID-19 are described in Table 1. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T26 | 144-149 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T27 | 166-171 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T28 | 188-195 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T29 | 203-212 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T30 | 235-242 | Phenotype | denotes | ageusia | http://purl.obolibrary.org/obo/HP_0041051 |
| T31 | 265-272 | Phenotype | denotes | anosmia | http://purl.obolibrary.org/obo/HP_0000458 |
| T32 | 293-301 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T33 | 371-376 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T34 | 403-412 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T35 | 468-477 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T36 | 1016-1025 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T78 | 64-72 | SP_7 | denotes | COVID-19 |
| T79 | 126-134 | SP_7 | denotes | COVID-19 |
| T80 | 378-389 | UBERON:0001004 | denotes | respiratory |
| T81 | 481-486 | UBERON:0001443 | denotes | chest |
| T82 | 588-598 | SP_7 | denotes | SARS-CoV-2 |
| T83 | 611-615 | UBERON:0000004 | denotes | naso |
| T84 | 620-633 | UBERON:0001179 | denotes | oropharyngeal |
| T85 | 642-647 | UBERON:0000981 | denotes | fecal |
| T86 | 747-757 | SP_7 | denotes | SARS-CoV-2 |
| T87 | 900-905 | UBERON:0001443 | denotes | chest |
| T88 | 994-1002 | SP_7 | denotes | COVID-19 |
| T89 | 1003-1015 | UBERON:0005169 | denotes | interstitial |
| T90 | 1080-1088 | SP_7 | denotes | COVID-19 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32840686-32588185-63205645 | 413-415 | 32588185 | denotes | [1 |
| 32840686-32814611-63205646 | 512-514 | 32814611 | denotes | [1 |
| 32840686-32749602-63205647 | 562-564 | 32749602 | denotes | [2 |
| 32840686-32558002-63205648 | 566-568 | 32558002 | denotes | 2 |
| 32840686-32753154-63205649 | 570-572 | 32753154 | denotes | 3 |
| 32840686-32503084-63205650 | 574-576 | 32503084 | denotes | 4 |
| 32840686-32638112-63205651 | 578-580 | 32638112 | denotes | 4 |
| 32840686-32302082-63205652 | 582-584 | 32302082 | denotes | 5 |
| 32840686-32761914-63205653 | 856-858 | 32761914 | denotes | [2 |