PMC:7445716 / 9112-10279
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T15 | 534-539 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
T16 | 953-958 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T7 | 534-539 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
T8 | 953-958 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T111 | 44-52 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T112 | 66-69 | Disease | denotes | GBS | http://purl.obolibrary.org/obo/MONDO_0016218 |
T113 | 117-125 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T114 | 179-187 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T115 | 256-265 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T116 | 318-325 | Disease | denotes | anosmia | http://purl.obolibrary.org/obo/MONDO_0010528 |
T117 | 346-354 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
T118 | 456-465 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T119 | 521-530 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T120 | 641-649 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T121 | 800-808 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T122 | 1047-1055 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T123 | 1069-1078 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T124 | 1133-1141 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T56 | 233-235 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
T57 | 304-309 | http://purl.obolibrary.org/obo/CLO_0001004 | denotes | 16/72 |
T58 | 534-539 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
T59 | 616-618 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T60 | 624-626 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
T61 | 632-634 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
T62 | 636-638 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
T63 | 741-746 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T64 | 781-787 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T65 | 953-958 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
161 | 43-51 | Disease | denotes | COVID-1 | MESH:C000657245 |
184 | 489-496 | Species | denotes | patien | Tax:9606 |
185 | 585-593 | Species | denotes | patient | Tax:9606 |
186 | 640-650 | Species | denotes | SARS-CoV- | Tax:2697049 |
187 | 771-779 | Species | denotes | patient | Tax:9606 |
188 | 799-809 | Species | denotes | SARS-CoV- | Tax:2697049 |
189 | 828-836 | Species | denotes | patient | Tax:9606 |
190 | 894-907 | Species | denotes | not specifie | Tax:32644 |
191 | 116-124 | Disease | denotes | COVID-1 | MESH:C000657245 |
192 | 178-186 | Disease | denotes | COVID-1 | MESH:C000657245 |
193 | 196-201 | Disease | denotes | feve | MESH:D005334 |
194 | 218-223 | Disease | denotes | coug | MESH:D003371 |
195 | 240-247 | Disease | denotes | dyspne | MESH:D004417 |
196 | 255-264 | Disease | denotes | pneumoni | MESH:D011014 |
197 | 287-294 | Disease | denotes | /ageusi | MESH:D000370 |
198 | 317-324 | Disease | denotes | /anosmi | MESH:D000857 |
199 | 345-353 | Disease | denotes | diarrhe | MESH:D003967 |
200 | 423-428 | Disease | denotes | feve | MESH:D005334 |
201 | 430-450 | Disease | denotes | respiratory symptom | MESH:D012818 |
202 | 455-464 | Disease | denotes | pneumoni | MESH:D011014 |
203 | 520-529 | Disease | denotes | pneumoni | MESH:D011014 |
204 | 1046-1077 | Disease | denotes | COVID-19 interstitial pneumoni | MESH:C000657245 |
205 | 1132-1140 | Disease | denotes | COVID-1 | MESH:C000657245 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T68 | 0-52 | Sentence | denotes | Clinical picture, diagnosis, and therapy of COVID-19 |
T69 | 53-148 | Sentence | denotes | All reported GBS cases (n = 72) except two were symptomatic for COVID-19 with various severity. |
T70 | 149-370 | Sentence | denotes | Most common manifestations of COVID-19 included fever (73.6%, 53/72), cough (72.2%, 52/72), dyspnea and/or pneumonia (63.8%, 46/72), hypo-/ageusia (22.2%, 16/72), hypo-/anosmia (20.8%, 15/72), and diarrhea (18.1%, 13/72). |
T71 | 371-570 | Sentence | denotes | One of the two asymptomatic subjects never developed fever, respiratory symptoms, or pneumonia [10], whereas the other patient showed an asymptomatic pneumonia at chest computed tomography (CT) [12]. |
T72 | 571-747 | Sentence | denotes | In all but six patients with available data [22, 24, 36, 44, 45, 52], SARS-CoV-2 RT-PCR with naso- or oropharyngeal swab or fecal exam was positive at first or following tests. |
T73 | 748-820 | Sentence | denotes | Nevertheless, these six patients tested positive at SARS-CoV-2 serology. |
T74 | 821-918 | Sentence | denotes | In four patients, the laboratory exam for the diagnostic confirmation was not specified [20, 40]. |
T75 | 919-1105 | Sentence | denotes | Typical “ground glass” aspects at chest-CT or similar findings at CT, Magnetic Resonance Imaging (MRI) or X-ray compatible with COVID-19 interstitial pneumonia were reported in 40 cases. |
T76 | 1106-1167 | Sentence | denotes | The detailed therapies for COVID-19 are described in Table 1. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T26 | 197-202 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T27 | 219-224 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T28 | 241-248 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
T29 | 256-265 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T30 | 288-295 | Phenotype | denotes | ageusia | http://purl.obolibrary.org/obo/HP_0041051 |
T31 | 318-325 | Phenotype | denotes | anosmia | http://purl.obolibrary.org/obo/HP_0000458 |
T32 | 346-354 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
T33 | 424-429 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T34 | 456-465 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T35 | 521-530 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T36 | 1069-1078 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T77 | 44-52 | SP_7 | denotes | COVID-19 |
T78 | 117-125 | SP_7 | denotes | COVID-19 |
T79 | 179-187 | SP_7 | denotes | COVID-19 |
T80 | 431-442 | UBERON:0001004 | denotes | respiratory |
T81 | 534-539 | UBERON:0001443 | denotes | chest |
T82 | 641-651 | SP_7 | denotes | SARS-CoV-2 |
T83 | 664-668 | UBERON:0000004 | denotes | naso |
T84 | 673-686 | UBERON:0001179 | denotes | oropharyngeal |
T85 | 695-700 | UBERON:0000981 | denotes | fecal |
T86 | 800-810 | SP_7 | denotes | SARS-CoV-2 |
T87 | 953-958 | UBERON:0001443 | denotes | chest |
T88 | 1047-1055 | SP_7 | denotes | COVID-19 |
T89 | 1056-1068 | UBERON:0005169 | denotes | interstitial |
T90 | 1133-1141 | SP_7 | denotes | COVID-19 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32840686-32588185-63205645 | 466-468 | 32588185 | denotes | [1 |
32840686-32814611-63205646 | 565-567 | 32814611 | denotes | [1 |
32840686-32749602-63205647 | 615-617 | 32749602 | denotes | [2 |
32840686-32558002-63205648 | 619-621 | 32558002 | denotes | 2 |
32840686-32753154-63205649 | 623-625 | 32753154 | denotes | 3 |
32840686-32503084-63205650 | 627-629 | 32503084 | denotes | 4 |
32840686-32638112-63205651 | 631-633 | 32638112 | denotes | 4 |
32840686-32302082-63205652 | 635-637 | 32302082 | denotes | 5 |
32840686-32761914-63205653 | 909-911 | 32761914 | denotes | [2 |