> top > docs > PMC:7444865 > spans > 5173-14274 > annotations

PMC:7444865 / 5173-14274 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T21 798-801 NCBITaxon:9606 denotes man
T22 1563-1574 NCBITaxon:1 denotes individuals
T23 1580-1586 NCBITaxon:9606 denotes people
T24 3701-3705 CHEBI:33290;CHEBI:33290 denotes food
T25 3848-3866 GO:0019098 denotes sexual orientation
T26 4080-4090 NCBITaxon:1 denotes individual
T27 5424-5442 GO:0007548 denotes sexual orientation
T28 5518-5522 GO:0007567 denotes born
T29 6636-6642 NCBITaxon:9606 denotes people
T30 6895-6901 NCBITaxon:9606 denotes people
T31 7421-7427 NCBITaxon:9606 denotes people
T32 8505-8512 NCBITaxon:9606 denotes persons
T37182 798-801 NCBITaxon:9606 denotes man
T78453 1563-1574 NCBITaxon:1 denotes individuals
T26849 1580-1586 NCBITaxon:9606 denotes people
T30076 3701-3705 CHEBI:33290;CHEBI:33290 denotes food
T73634 3848-3866 GO:0019098 denotes sexual orientation
T79752 4080-4090 NCBITaxon:1 denotes individual
T66966 5424-5442 GO:0007548 denotes sexual orientation
T83865 5518-5522 GO:0007567 denotes born
T82461 6636-6642 NCBITaxon:9606 denotes people
T535 6895-6901 NCBITaxon:9606 denotes people
T45415 7421-7427 NCBITaxon:9606 denotes people
T24218 8505-8512 NCBITaxon:9606 denotes persons

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 4974-4980 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T2 5017-5023 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T3 5254-5260 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T4 5286-5292 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T5 5341-5347 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T6 5911-5919 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4699-4705 Body_part denotes scales http://purl.obolibrary.org/obo/UBERON_0002542
T2 4741-4746 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 5036-5046 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050
T6 5051-5058 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 123-124 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 214-215 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 322-329 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T20 537-546 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T21 553-558 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T22 762-767 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T23 789-790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 839-844 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T25 861-866 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T26 1157-1162 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T27 1206-1207 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1323-1324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1402-1403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1702-1713 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T31 1824-1835 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T32 1967-1968 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2198-2199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 2573-2574 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 2768-2769 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 2817-2818 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 2927-2930 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T38 2984-2985 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 2996-2997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 3015-3016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 3292-3297 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T42 3526-3527 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4022-4023 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 4533-4534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 4545-4546 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 4748-4750 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T47 4883-4891 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T48 4942-4952 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T49 5568-5578 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrument
T50 5587-5593 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T51 5600-5601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 5654-5656 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T53 5718-5719 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 6035-6040 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T55 6072-6077 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T56 6286-6287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 6400-6401 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 6748-6749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 6814-6815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 6842-6843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 7037-7038 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 7122-7123 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 7271-7272 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 8489-8490 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T65 8804-8805 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 845-850 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T3 3298-3303 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 5036-5046 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716
T2 5051-5058 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T3 7493-7498 Phenotype denotes falls http://purl.obolibrary.org/obo/HP_0002527

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
44 651-654 Species denotes men Tax:9606
45 889-901 Species denotes participants Tax:9606
47 1580-1586 Species denotes people Tax:9606
50 3304-3316 Species denotes participants Tax:9606
51 2478-2484 Disease denotes arrest MESH:D006323
53 3579-3585 Disease denotes arrest MESH:D006323
58 5547-5550 Gene denotes zip Gene:1613
59 5078-5085 Species denotes patient Tax:9606
60 5036-5046 Disease denotes depression MESH:D000275
61 5051-5058 Disease denotes anxiety MESH:D001007
63 5780-5783 Gene denotes zip Gene:1613
66 6636-6642 Species denotes people Tax:9606
67 6895-6901 Species denotes people Tax:9606
69 7421-7427 Species denotes people Tax:9606
71 8505-8512 Species denotes persons Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T38 0-7 Sentence denotes Methods
T39 9-27 Sentence denotes Survey Development
T40 28-304 Sentence denotes Conceptualization of the survey came from an ongoing partnership between academic researchers, a federally qualified health center (FQHC), and an equity-driven non-profit that serves as a hub for community leadership, empowerment, and transformation through social engagement.
T41 305-431 Sentence denotes Our main project focused on exploring the experiences and dimensions of social exclusion and their effects on health outcomes.
T42 432-503 Sentence denotes Academic partners analyzed the existing literature on social exclusion.
T43 504-593 Sentence denotes The non-profit and FQHC partners organized three focus groups in Allentown, Pennsylvania:
T44 594-697 Sentence denotes The first with Latinx populations, the second with Black men, and the third with immigrant populations.
T45 698-775 Sentence denotes All partners trained community members who then facilitated the focus groups.
T46 776-851 Sentence denotes For example, a Latino man was trained to facilitate the Latinx focus group.
T47 852-1136 Sentence denotes In these focus groups, we found that participants experienced specific salient stressors that shaped their health outcomes, conditions that were neither regularly captured in our population health surveillance surveys nor were in the broad literature on social determinants of health.
T48 1137-1271 Sentence denotes Using the data from focus groups, academic partners began developing a brief but comprehensive survey that includes these experiences.
T49 1272-1429 Sentence denotes We worked with our non-profit and FQHC partners in a process that involved multiple conversations with community members who have a broad range of expertise.
T50 1430-1655 Sentence denotes They included religious leaders, teachers, students and interns, health care providers, previously incarcerated and justice-involved individuals, and people with multiple chronic conditions, including substance use disorders.
T51 1656-1774 Sentence denotes University partners searched for any existing instruments consistent with the experiences of marginalized communities.
T52 1775-1920 Sentence denotes Community members critiqued some of the existing instruments to ensure that word choices reflected their experiences and co-created new measures.
T53 1922-1930 Sentence denotes Measures
T54 1931-2129 Sentence denotes Novel measures of stressors such as a range of negative encounters with the police and assessments of whether those encounters were necessary were included to assess experiences of police brutality.
T55 2130-2302 Sentence denotes We conceptualize police brutality not merely as the use of force by a police officer, but police action that dehumanizes the victim, even without conscious intent [19, 20].
T56 2303-2841 Sentence denotes Respondents were provided with the following examples of police actions: police cursed at respondent; police searched, frisked, or patted the respondent; police threatened to arrest the respondent; police handcuffed the respondent; police threatened the respondent with a ticket; police shoved or grabbed the respondent; police hit or kicked the respondent; police used pepper spray or another chemical on the respondent; police used an electroshock weapon such as a stun gun on the respondent, and police pointed a gun at the respondent.
T57 2842-3048 Sentence denotes For each of these actions, respondents were asked whether it never happened to them, has happened about once or twice in their lives, happens a few times a year, about once a month, or happens about weekly.
T58 3049-3153 Sentence denotes SHUR also assessed respondents’ evaluations of the necessity of the police actions they had experienced.
T59 3154-3459 Sentence denotes They were asked: “Thinking of your most recent experience(s) with the police, would you say the action of the officer was necessary?” Our focus group participants contend that individual perceptions of the necessity of police actions are important indicators of the dehumanizing impact of police violence.
T60 3460-3725 Sentence denotes We also assessed the likelihood of calling the police if there is a problem, worries about potential police brutality, arrest or incarceration, and cause-specific stressors such as race-related impression management, concerns about housing, food, and medical bills.
T61 3726-3888 Sentence denotes We collected data on reasons for perceived discrimination such as race, language or accent, religion, immigration status, sexual orientation, and gender identity.
T62 3889-4113 Sentence denotes We also assessed spaces and perpetrators of discrimination—whether discrimination was experienced at work, school, or perpetuated by a health care provider, police or security officer, or an individual in one’s neighborhood.
T63 4114-4372 Sentence denotes Other novel measures included in the survey are relational aspects of health care delivery, such as respondents’ perceptions of respect during their clinical encounter, and specifically by receptionists, nurses, medical or nursing assistants, and physicians.
T64 4373-4557 Sentence denotes The survey included three indicators of respondents’ sense of social exclusion, feeling like they are not trusted, often feeling left out, and not feeling like a member of a community.
T65 4558-4810 Sentence denotes We also included existing measures of stressors such as discrimination using the Everyday Discrimination and the Heightened Racial Vigilance scales [21], Group-Based Medical Mistrust scale [22], and the Adverse Childhood Experiences (ACEs) module [23].
T66 4811-5112 Sentence denotes We included the following measures of health status: self-rated health, activity limitations (respondent limited in any way in any activities because of physical, mental, or emotional problems), self-rated mental health, and depression and anxiety using the two-item patient health questionnaire [24].
T67 5113-5360 Sentence denotes Indicators of access to care include usual source of care, health insurance, perceived unmet need for medical care, perceived unmet need for mental health care, past use of mental health services, and the probability of seeking mental health care.
T68 5361-5556 Sentence denotes Sociodemographic data collected include race, gender identity, sexual orientation, age, marital status, level of education, work status, years in the USA if born outside of the USA, and zip code.
T69 5557-5658 Sentence denotes The survey instrument was pre-tested among a small subset of community members in Allentown (n = 11).
T70 5659-5845 Sentence denotes Revisions were made, and the survey was then piloted using a convenient online sample (n = 100) with respondents from 65 zip codes across the country, majority being from the East Coast.
T71 5846-5922 Sentence denotes The final version of the survey, after piloting, is presented in Appendix 1.
T72 5923-6067 Sentence denotes Approval from Lehigh University’s Institutional Review Board was obtained both for the initial social exclusion focus groups and for the survey.
T73 6068-6234 Sentence denotes The focus groups and survey were funded internally by Lehigh University’s Community-engaged Health Research Fellowship and the Faculty Innovation Grant, respectively.
T74 6236-6251 Sentence denotes Data Collection
T75 6252-6471 Sentence denotes The SHUR employed quota sampling, a non-probability sampling approach where we looked for specific characteristics of respondents and then obtained a tailored sample that is representative of the population of interest.
T76 6472-6548 Sentence denotes The target was 4000 respondents living in urban areas in the contiguous USA.
T77 6549-6612 Sentence denotes We assigned quotas for usual source of care and race/ethnicity.
T78 6613-6834 Sentence denotes Black, Indigenous, and people color, as well as those who are poor, are more likely to receive care at specific sites rather than from a specific primary care physician with whom they have established a relationship [25].
T79 6835-7001 Sentence denotes Having a regular source of care, and the kind of place that people go to for usual care matters for relational aspects of care such as perceived respect and mistrust.
T80 7002-7070 Sentence denotes Given this literature, we assigned a quota for usual source of care.
T81 7071-7294 Sentence denotes At least half of the sample (n = 2000) must report a clinic or community health center, an emergency department or urgent care facility as their usual source of care, or report that they did not have a usual source of care.
T82 7295-7344 Sentence denotes The second quota was specific for race/ethnicity.
T83 7345-7487 Sentence denotes Because we needed 4000 respondents, 1000 respondents (at least 25%) must be people of color and no more than 65% should be non-Hispanic White.
T84 7488-7676 Sentence denotes This falls within the range of the US Census and Pew Center estimates of the racial demographics of urbanized areas and provides enough sample sizes to complete analysis by race/ethnicity.
T85 7677-7843 Sentence denotes We contracted with Qualtrics because their panels are relatively more demographically representative than other online survey platforms for convenience sampling [26].
T86 7844-7989 Sentence denotes Qualtrics invited respondents by partnering with over 20 Web-based panel providers to access potential respondents based on the specified quotas.
T87 7990-8129 Sentence denotes Respondents received some form of incentive from panel providers, but the specific value of the incentive was not disclosed to researchers.
T88 8130-8240 Sentence denotes Qualtrics monitored the specified quotas using screening questions on race/ethnicity and usual source of care.
T89 8241-8438 Sentence denotes For example, when enough non-Hispanic Whites had completed the survey, anyone who identified as non-Hispanic White who expressed interest in taking the survey was not redirected to the full survey.
T90 8439-8488 Sentence denotes This process continued until the quotas were met.
T91 8489-8565 Sentence denotes A total of 7495 persons passed the screeners and met the quota requirements.
T92 8566-8646 Sentence denotes Qualtrics performed quality checks on the data and removed incomplete responses.
T93 8647-8722 Sentence denotes They also assessed the time it took for respondents to complete the survey.
T94 8723-8772 Sentence denotes The median time for survey completion was 10 min.
T95 8773-9037 Sentence denotes Respondents who took less than a third of the median time to complete the survey were excluded from the final sample because of the possibility that they were not paying attention to the questions and might have been checking response boxes as quickly as possible.
T96 9038-9101 Sentence denotes After these checks, we were left with 4389 completed responses.

2_test

Id Subject Object Predicate Lexical cue
32839897-28323470-64552230 2294-2296 28323470 denotes 19
32839897-20195782-64552231 4748-4750 20195782 denotes 22
32839897-28784309-64552232 4806-4808 28784309 denotes 23
32839897-20633738-64552233 5108-5110 20633738 denotes 24