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PMC:7443692 / 9613-13789 JSONTXT

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LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T10 2953-2963 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes microscopy http://purl.bioontology.org/ontology/MEDDRA/10069374
T11 3144-3150 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes weight http://purl.bioontology.org/ontology/MEDDRA/10047890

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T38 67-79 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T39 557-560 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T40 703-711 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 1012-1019 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T42 1054-1063 Chemical denotes glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T43 1104-1117 Chemical denotes pyroglutamine http://purl.obolibrary.org/obo/CHEBI_133469
T44 1190-1197 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T45 1239-1242 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T48 1346-1349 Chemical denotes Cys http://purl.obolibrary.org/obo/CHEBI_29950|http://purl.obolibrary.org/obo/CHEBI_15356|http://purl.obolibrary.org/obo/CHEBI_17561
T51 1368-1377 Chemical denotes disulfide http://purl.obolibrary.org/obo/CHEBI_48343
T52 1391-1394 Chemical denotes Cys http://purl.obolibrary.org/obo/CHEBI_29950|http://purl.obolibrary.org/obo/CHEBI_15356|http://purl.obolibrary.org/obo/CHEBI_17561
T55 1518-1521 Chemical denotes Cys http://purl.obolibrary.org/obo/CHEBI_29950|http://purl.obolibrary.org/obo/CHEBI_15356|http://purl.obolibrary.org/obo/CHEBI_17561
T58 1531-1534 Chemical denotes Val http://purl.obolibrary.org/obo/CHEBI_16414|http://purl.obolibrary.org/obo/CHEBI_30015
T60 1573-1576 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T62 1586-1589 Chemical denotes Gln http://purl.obolibrary.org/obo/CHEBI_30011
T63 1650-1660 Chemical denotes methionine http://purl.obolibrary.org/obo/CHEBI_16811|http://purl.obolibrary.org/obo/CHEBI_64558
T65 1683-1693 Chemical denotes methionine http://purl.obolibrary.org/obo/CHEBI_16811|http://purl.obolibrary.org/obo/CHEBI_64558
T67 1831-1834 Chemical denotes Met http://purl.obolibrary.org/obo/CHEBI_16044|http://purl.obolibrary.org/obo/CHEBI_16643|http://purl.obolibrary.org/obo/CHEBI_16811
T70 1856-1867 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T71 1920-1923 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T73 1928-1931 Chemical denotes Gln http://purl.obolibrary.org/obo/CHEBI_30011
T74 2098-2109 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T75 2608-2620 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T76 2771-2778 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T77 3028-3031 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T78 3083-3090 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T79 3381-3388 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T80 3407-3416 Chemical denotes glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T81 3440-3448 Chemical denotes N-glycan http://purl.obolibrary.org/obo/CHEBI_59520
T82 3650-3658 Chemical denotes cysteine http://purl.obolibrary.org/obo/CHEBI_15356
T83 3721-3728 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T84 3776-3783 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T85 3839-3843 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T86 3897-3904 Chemical denotes oxonium http://purl.obolibrary.org/obo/CHEBI_29412
T87 3905-3909 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T88 3933-3940 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T89 3950-3954 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T90 4037-4041 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T91 4113-4119 Chemical denotes fucose http://purl.obolibrary.org/obo/CHEBI_33984
T92 4163-4175 Chemical denotes glycopeptide http://purl.obolibrary.org/obo/CHEBI_24396

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T40 50-60 Species denotes SARS-CoV-2 NCBItxid:2697049
T41 99-104 Species denotes Human NCBItxid:9606
T42 154-164 Species denotes SARS-CoV-2 NCBItxid:2697049
T43 263-268 Species denotes human NCBItxid:9606
T44 2115-2126 Species denotes pseudovirus NCBItxid:186672
T45 2151-2161 Species denotes SARS-CoV-2 NCBItxid:2697049
T46 2591-2601 Species denotes SARS-CoV-2 NCBItxid:2697049
T47 2650-2655 Species denotes Human NCBItxid:9606
T48 2678-2688 Species denotes SARS-CoV-2 NCBItxid:2697049
T49 2713-2718 Species denotes human NCBItxid:9606
T50 3070-3080 Species denotes SARS-CoV-2 NCBItxid:2697049
T51 3117-3122 Species denotes human NCBItxid:9606

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T49 0-109 Sentence denotes Expression, Purification, and Characterization of SARS-CoV-2 Spike Glycoprotein Trimer and Soluble Human ACE2
T50 110-616 Sentence denotes A trimer-stabilized, soluble variant of the SARS-CoV-2 S that contains 22 canonical N-linked glycosylation sequons per protomer and a soluble version of human ACE2 that contains six, lacking the most C-terminal seventh, canonical N-linked glycosylation sequons (Figure 1 A) were purified from the media of transfected HEK293 cells, and the quaternary structure confirmed by negative EM staining for the S trimer (Figure 1B) and purity examined by SDS-PAGE Coomassie G-250 stained gels for both (Figure 1C).
T51 617-745 Sentence denotes In addition, proteolytic digestions followed by proteomic analyses confirmed that the proteins were highly purified (Table S12).
T52 746-945 Sentence denotes Finally, the N terminus of both the mature S and the soluble mature ACE2 were empirically determined via proteolytic digestions and liquid chromatography-tandem mass spectrometry (LC-MS/MS) analyses.
T53 946-1174 Sentence denotes These results confirmed that both the secreted, mature forms of S protein and ACE2 begin with an N-terminal glutamine that has undergone condensation to form pyroglutamine at residues 14 and 18, respectively (Figures 1D and S1).
T54 1175-1422 Sentence denotes The N-terminal peptide observed for S also contains a glycan at Asn-0017 (Figure 1D), and mass spectrometry analysis of non-reducing proteolytic digestions confirmed that Cys-0015 of S is in a disulfide linkage with Cys-0136 (Figure S2; Table S2).
T55 1423-1756 Sentence denotes Given that SignalP (Almagro Armenteros et al., 2019) predicts signal sequence cleavage between Cys-0015 and Val-0016 but we observed cleavage between Ser-0013 and Gln-0014, we examined the possibility that an in-frame upstream methionine to the proposed start methionine (Figure 1A) might be used to initiate translation (Figure S3).
T56 1757-1976 Sentence denotes If one examines the predicted signal sequence cleavage using the in-frame Met that is encoded nine amino acids upstream, SignalP now predicts cleavage between the Ser and Gln that we observed in our studies (Figure S3).
T57 1977-2218 Sentence denotes To examine whether this impacted S expression, we expressed constructs that contained or did not contain the upstream 27 nucleotides in a pseudovirus (VSV) system expressing SARS-CoV-2 S (Figure S4) and in our HEK293 system (data not shown).
T58 2219-2340 Sentence denotes Both expression systems produced a similar amount of S regardless of which expression construct was utilized (Figure S4).
T59 2341-2546 Sentence denotes Thus, while the translation initiation start site has still not been fully defined, allowing for earlier translation in expression construct design did not have a significant impact on the generation of S.
T60 2547-2660 Sentence denotes Figure 1 Expression and Characterization of SARS-CoV-2 Spike Glycoprotein Trimer Immunogen and Soluble Human ACE2
T61 2661-2724 Sentence denotes (A) Sequences of SARS-CoV-2 S immunogen and soluble human ACE2.
T62 2725-2831 Sentence denotes The N-terminal pyroglutamines for both mature protein monomers are bolded, underlined, and shown in green.
T63 2832-2918 Sentence denotes The canonical N-linked glycosylation sequons are bolded, underlined, and shown in red.
T64 2919-3128 Sentence denotes (B and C) Negative stain electron microscopy of the purified trimer (B) and Coomassie G-250-stained reducing SDS-PAGE gels (C) confirmed purity of the SARS-CoV-2 S protein trimer and of the soluble human ACE2.
T65 3129-3159 Sentence denotes MWM, molecular weight markers.
T66 3160-3329 Sentence denotes (D) A representative Step-HCD fragmentation spectrum from mass-spectrometry analysis of a tryptic digest of S annotated manually based on search results from pGlyco 2.2.
T67 3330-3422 Sentence denotes This spectrum defines the N terminus of the mature protein monomer as (pyro-)glutamine 0014.
T68 3423-3584 Sentence denotes A representative N-glycan consistent with this annotation and our glycomics data (Figure 2) is overlaid by using the Symbol Nomenclature For Glycans (SNFG) code.
T69 3585-3621 Sentence denotes This complex glycan occurs at N0017.
T70 3622-3741 Sentence denotes Note, that as expected, the cysteine is carbamidomethylated, and the mass accuracy of the assigned peptide is 0.98 ppm.
T71 3742-3854 Sentence denotes On the sequence of the N-terminal peptide and in the spectrum, the assigned b (blue) and y (red) ions are shown.
T72 3855-4008 Sentence denotes In the spectrum, purple highlights glycan oxonium ions and green marks intact peptide fragment ions with various partial glycan sequences still attached.
T73 4009-4176 Sentence denotes Note that the green-labeled ions allow for limited topology to be extracted including defining that the fucose is on the core and not the antennae of the glycopeptide.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T30 50-60 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T31 154-164 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T32 2151-2161 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T33 2591-2601 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T34 2678-2688 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T35 3070-3080 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1191 61-79 Protein denotes Spike Glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P27662|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P27277|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P12647|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T1292 67-79 Protein denotes Glycoprotein https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1358 105-109 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1359 269-273 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1360 740-743 Protein denotes S12 https://www.uniprot.org/uniprot/Q4VAY7|https://www.uniprot.org/uniprot/P28222
T1362 814-818 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1363 1010-1019 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1396 1024-1028 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1397 1179-1197 Protein denotes N-terminal peptide https://www.uniprot.org/uniprot/Q9DB14|https://www.uniprot.org/uniprot/Q9D2P6|https://www.uniprot.org/uniprot/Q9CYP0|https://www.uniprot.org/uniprot/Q9BS38|https://www.uniprot.org/uniprot/Q8CCZ3|https://www.uniprot.org/uniprot/Q6FHD0|https://www.uniprot.org/uniprot/Q06A28|https://www.uniprot.org/uniprot/P27682|https://www.uniprot.org/uniprot/P18844|https://www.uniprot.org/uniprot/P12961|https://www.uniprot.org/uniprot/P05408|https://www.uniprot.org/uniprot/P01165|https://www.uniprot.org/uniprot/P01164|https://www.uniprot.org/uniprot/A5HAK0|https://www.uniprot.org/uniprot/A5A6J6
T1412 2602-2620 Protein denotes Spike Glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P27662|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P27277|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P12647|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T1513 2608-2620 Protein denotes Glycoprotein https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1579 2656-2660 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1580 2719-2723 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1581 3081-3090 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1614 3123-3127 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T1615 3765-3783 Protein denotes N-terminal peptide https://www.uniprot.org/uniprot/Q9DB14|https://www.uniprot.org/uniprot/Q9D2P6|https://www.uniprot.org/uniprot/Q9CYP0|https://www.uniprot.org/uniprot/Q9BS38|https://www.uniprot.org/uniprot/Q8CCZ3|https://www.uniprot.org/uniprot/Q6FHD0|https://www.uniprot.org/uniprot/Q06A28|https://www.uniprot.org/uniprot/P27682|https://www.uniprot.org/uniprot/P18844|https://www.uniprot.org/uniprot/P12961|https://www.uniprot.org/uniprot/P05408|https://www.uniprot.org/uniprot/P01165|https://www.uniprot.org/uniprot/P01164|https://www.uniprot.org/uniprot/A5HAK0|https://www.uniprot.org/uniprot/A5A6J6

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T45 435-440 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T46 2386-2390 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T46 67-79 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925
T47 435-440 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T48 703-711 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T49 1012-1019 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T50 1054-1063 Body_part denotes glutamine http://purl.org/sig/ont/fma/fma82752
T51 1650-1660 Body_part denotes methionine http://purl.org/sig/ont/fma/fma82759
T52 1683-1693 Body_part denotes methionine http://purl.org/sig/ont/fma/fma82759
T53 1856-1867 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T54 2098-2109 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T55 2608-2620 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925
T56 2771-2778 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T57 3083-3090 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T58 3381-3388 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T59 3407-3416 Body_part denotes glutamine http://purl.org/sig/ont/fma/fma82752
T60 3650-3658 Body_part denotes cysteine http://purl.org/sig/ont/fma/fma82751
T61 4113-4119 Body_part denotes fucose http://purl.org/sig/ont/fma/fma82790
T62 4163-4175 Body_part denotes glycopeptide http://purl.org/sig/ont/fma/fma82784

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T2 4147-4155 http://purl.obolibrary.org/obo/MAT_0000086 denotes antennae

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T32 203-216 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T33 349-362 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T34 642-652 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T35 863-873 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T36 1320-1330 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T37 1732-1743 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T38 2357-2379 http://purl.obolibrary.org/obo/GO_0006413 denotes translation initiation
T39 2357-2368 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T40 2446-2457 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T41 2855-2868 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T30 203-216 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T31 349-362 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T32 642-652 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T33 863-873 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T34 1320-1330 http://purl.obolibrary.org/obo/GO_0007586 denotes digestions
T35 1732-1743 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T36 2357-2379 http://purl.obolibrary.org/obo/GO_0006413 denotes translation initiation
T37 2357-2368 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T38 2446-2457 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T39 2855-2868 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

2_test

Id Subject Object Predicate Lexical cue
32841605-30778233-19659502 1470-1474 30778233 denotes 2019