PMC:7443692 / 71351-72116 JSONTXT

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T463","span":{"begin":253,"end":259},"obj":"Chemical"},{"id":"T464","span":{"begin":278,"end":285},"obj":"Chemical"}],"attributes":[{"id":"A463","pred":"chebi_id","subj":"T463","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A464","pred":"chebi_id","subj":"T464","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Antigen accessibility simulations were carried out as described in the Method Details section and the mean of four simulations (three of length 350ns, one of length 200ns; amounting to 1.25 μs of total molecular dynamics simulation time) were utilized. Glycan-glycan and glycan-peptide interactions were also calculated based on simulations as a percentage of time residues were in contact and averaged (mean) to produce the corresponding supplemental (colored) sequence figures with the raw numbers for coloring present also in each corresponding supplemental table tab. 3D distances were computed using Rpdb as described in more detail in the Method Details section. This data is presented using box \u0026 whisker plots with all underlying statistics calculated in R."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T477","span":{"begin":0,"end":252},"obj":"Sentence"},{"id":"T478","span":{"begin":253,"end":571},"obj":"Sentence"},{"id":"T479","span":{"begin":572,"end":668},"obj":"Sentence"},{"id":"T480","span":{"begin":669,"end":765},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Antigen accessibility simulations were carried out as described in the Method Details section and the mean of four simulations (three of length 350ns, one of length 200ns; amounting to 1.25 μs of total molecular dynamics simulation time) were utilized. Glycan-glycan and glycan-peptide interactions were also calculated based on simulations as a percentage of time residues were in contact and averaged (mean) to produce the corresponding supplemental (colored) sequence figures with the raw numbers for coloring present also in each corresponding supplemental table tab. 3D distances were computed using Rpdb as described in more detail in the Method Details section. This data is presented using box \u0026 whisker plots with all underlying statistics calculated in R."}