PMC:7443692 / 67708-68245 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7443692","sourcedb":"PMC","sourceid":"7443692","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7443692","text":"Antigenic surface analysis. A series of 3D structure snapshots of the simulation were taken at 1 ns intervals and analyzed in terms of their ability to interact with a spherical probe based on the average size of hypervariable loops present in an antibody complementarity determining region (CDR), as described recently (https://www.biorxiv.org/content/10.1101/2020.04.07.030445v2). The percentage of simulation time each residue was exposed to the AbASA probe was calculated and plotted onto both the 3D structure and primary sequence.\n","tracks":[{"project":"LitCovid-sample-sentences","denotations":[{"id":"T448","span":{"begin":0,"end":27},"obj":"Sentence"},{"id":"T449","span":{"begin":28,"end":382},"obj":"Sentence"},{"id":"T450","span":{"begin":383,"end":536},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T448","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T449","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T450","pred":"source","obj":"LitCovid-sample-sentences"}]},{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T5717","span":{"begin":292,"end":295},"obj":"Protein"}],"attributes":[{"id":"A5717","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/Q9NS54"},{"id":"A5718","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/Q95JH5"},{"id":"A5719","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/Q95JH4"},{"id":"A5720","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/Q8WW84"},{"id":"A5721","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/Q5T6A3"},{"id":"A5722","pred":"uniprot_id","subj":"T5717","obj":"https://www.uniprot.org/uniprot/P17516"},{"subj":"T5717","pred":"source","obj":"LitCovid-sample-UniProt"}]},{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T223","span":{"begin":247,"end":255},"obj":"Body_part"}],"attributes":[{"id":"A223","pred":"fma_id","subj":"T223","obj":"http://purl.org/sig/ont/fma/fma62871"},{"subj":"T223","pred":"source","obj":"LitCovid-sample-PD-FMA"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-sample-sentences","color":"#93e2ec","default":true},{"id":"LitCovid-sample-UniProt","color":"#ecdc93"},{"id":"LitCovid-sample-PD-FMA","color":"#c293ec"}]}]}}