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PMC:7443692 / 63542-64074 JSON TXT

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LitCovid-sample-CHEBI

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T432	21-28	Chemical	denotes	protein	http://purl.obolibrary.org/obo/CHEBI_36080
T433	107-114	Chemical	denotes	protein	http://purl.obolibrary.org/obo/CHEBI_36080
T434	361-368	Chemical	denotes	protein	http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id	Subject	Object	Predicate	Lexical cue	ncbi_taxonomy_id
T175	0-10	Species	denotes	SARS-CoV-2	NCBItxid:2697049

LitCovid-sample-sentences

Id	Subject	Object	Predicate	Lexical cue
T429	0-302	Sentence	denotes	SARS-CoV-2 Spike (S) protein structure and ACE2 co-complex – A 3D structure of the prefusion form of the S protein (RefSeq: YP_009724390.1, UniProt: P0DTC2 SPIKE_SARS2), based on a Cryo-EM structure (PDB code 6VSB) (Wrapp et al., 2020), was obtained from the SWISS-MODEL server (swissmodel.expasy.org).
T430	303-369	Sentence	denotes	The model has 95% coverage (residues 27 to 1146) of the S protein.
T431	370-531	Sentence	denotes	The receptor binding domain (RBD) in the “open” conformation was replaced with the RBD from an ACE2 co-complex (PDB code 6M0J) by grafting residues C336 to V524.

LitCovid-sample-PD-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T106	0-10	Disease	denotes	SARS-CoV-2	http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-UniProt

Id	Subject	Object	Predicate	Lexical cue	uniprot_id
T5230	17-28	Protein	denotes	(S) protein	https://www.uniprot.org/uniprot/Q9UIP0\|https://www.uniprot.org/uniprot/Q9UIN9\|https://www.uniprot.org/uniprot/Q9UIN8\|https://www.uniprot.org/uniprot/Q9UIN7\|https://www.uniprot.org/uniprot/Q9UIN6\|https://www.uniprot.org/uniprot/Q9UBH8\|https://www.uniprot.org/uniprot/Q9NRH8\|https://www.uniprot.org/uniprot/Q9NRH7\|https://www.uniprot.org/uniprot/Q9NRH6\|https://www.uniprot.org/uniprot/Q9NRH5\|https://www.uniprot.org/uniprot/Q9NRH4\|https://www.uniprot.org/uniprot/Q9NPG5\|https://www.uniprot.org/uniprot/Q9NPE0\|https://www.uniprot.org/uniprot/Q9NP52\|https://www.uniprot.org/uniprot/Q95IF9\|https://www.uniprot.org/uniprot/Q8N5P3\|https://www.uniprot.org/uniprot/Q8IZU6\|https://www.uniprot.org/uniprot/Q8IZU5\|https://www.uniprot.org/uniprot/Q8IZU4\|https://www.uniprot.org/uniprot/Q86Z04\|https://www.uniprot.org/uniprot/Q7YR44\|https://www.uniprot.org/uniprot/Q7LA71\|https://www.uniprot.org/uniprot/Q7LA70\|https://www.uniprot.org/uniprot/Q5STD2\|https://www.uniprot.org/uniprot/Q5SQ85\|https://www.uniprot.org/uniprot/Q1XI16\|https://www.uniprot.org/uniprot/Q1XI12\|https://www.uniprot.org/uniprot/Q15517\|https://www.uniprot.org/uniprot/O43509\|https://www.uniprot.org/uniprot/O19084\|https://www.uniprot.org/uniprot/B0UYZ7\|https://www.uniprot.org/uniprot/B0S7V2\|https://www.uniprot.org/uniprot/A5A6L9
T5263	43-47	Protein	denotes	ACE2	https://www.uniprot.org/uniprot/Q9UFZ6
T5264	61-65	Protein	denotes	A 3D	https://www.uniprot.org/uniprot/Q96AK3\|https://www.uniprot.org/uniprot/Q7Z2N6\|https://www.uniprot.org/uniprot/Q7Z2N5\|https://www.uniprot.org/uniprot/Q7Z2N2\|https://www.uniprot.org/uniprot/Q5JZ91
T5269	105-114	Protein	denotes	S protein	https://www.uniprot.org/uniprot/Q9UIP0\|https://www.uniprot.org/uniprot/Q9UIN9\|https://www.uniprot.org/uniprot/Q9UIN8\|https://www.uniprot.org/uniprot/Q9UIN7\|https://www.uniprot.org/uniprot/Q9UIN6\|https://www.uniprot.org/uniprot/Q9UBH8\|https://www.uniprot.org/uniprot/Q9NRH8\|https://www.uniprot.org/uniprot/Q9NRH7\|https://www.uniprot.org/uniprot/Q9NRH6\|https://www.uniprot.org/uniprot/Q9NRH5\|https://www.uniprot.org/uniprot/Q9NRH4\|https://www.uniprot.org/uniprot/Q9NPG5\|https://www.uniprot.org/uniprot/Q9NPE0\|https://www.uniprot.org/uniprot/Q9NP52\|https://www.uniprot.org/uniprot/Q95IF9\|https://www.uniprot.org/uniprot/Q8N5P3\|https://www.uniprot.org/uniprot/Q8IZU6\|https://www.uniprot.org/uniprot/Q8IZU5\|https://www.uniprot.org/uniprot/Q8IZU4\|https://www.uniprot.org/uniprot/Q86Z04\|https://www.uniprot.org/uniprot/Q7YR44\|https://www.uniprot.org/uniprot/Q7LA71\|https://www.uniprot.org/uniprot/Q7LA70\|https://www.uniprot.org/uniprot/Q5STD2\|https://www.uniprot.org/uniprot/Q5SQ85\|https://www.uniprot.org/uniprot/Q1XI16\|https://www.uniprot.org/uniprot/Q1XI12\|https://www.uniprot.org/uniprot/Q15517\|https://www.uniprot.org/uniprot/O43509\|https://www.uniprot.org/uniprot/O19084\|https://www.uniprot.org/uniprot/B0UYZ7\|https://www.uniprot.org/uniprot/B0S7V2\|https://www.uniprot.org/uniprot/A5A6L9
T5302	359-368	Protein	denotes	S protein	https://www.uniprot.org/uniprot/Q9UIP0\|https://www.uniprot.org/uniprot/Q9UIN9\|https://www.uniprot.org/uniprot/Q9UIN8\|https://www.uniprot.org/uniprot/Q9UIN7\|https://www.uniprot.org/uniprot/Q9UIN6\|https://www.uniprot.org/uniprot/Q9UBH8\|https://www.uniprot.org/uniprot/Q9NRH8\|https://www.uniprot.org/uniprot/Q9NRH7\|https://www.uniprot.org/uniprot/Q9NRH6\|https://www.uniprot.org/uniprot/Q9NRH5\|https://www.uniprot.org/uniprot/Q9NRH4\|https://www.uniprot.org/uniprot/Q9NPG5\|https://www.uniprot.org/uniprot/Q9NPE0\|https://www.uniprot.org/uniprot/Q9NP52\|https://www.uniprot.org/uniprot/Q95IF9\|https://www.uniprot.org/uniprot/Q8N5P3\|https://www.uniprot.org/uniprot/Q8IZU6\|https://www.uniprot.org/uniprot/Q8IZU5\|https://www.uniprot.org/uniprot/Q8IZU4\|https://www.uniprot.org/uniprot/Q86Z04\|https://www.uniprot.org/uniprot/Q7YR44\|https://www.uniprot.org/uniprot/Q7LA71\|https://www.uniprot.org/uniprot/Q7LA70\|https://www.uniprot.org/uniprot/Q5STD2\|https://www.uniprot.org/uniprot/Q5SQ85\|https://www.uniprot.org/uniprot/Q1XI16\|https://www.uniprot.org/uniprot/Q1XI12\|https://www.uniprot.org/uniprot/Q15517\|https://www.uniprot.org/uniprot/O43509\|https://www.uniprot.org/uniprot/O19084\|https://www.uniprot.org/uniprot/B0UYZ7\|https://www.uniprot.org/uniprot/B0S7V2\|https://www.uniprot.org/uniprot/A5A6L9
T5335	399-402	Protein	denotes	RBD	https://www.uniprot.org/uniprot/Q63492\|https://www.uniprot.org/uniprot/Q63491\|https://www.uniprot.org/uniprot/Q62815\|https://www.uniprot.org/uniprot/Q62691\|https://www.uniprot.org/uniprot/Q01542\|https://www.uniprot.org/uniprot/P27732\|https://www.uniprot.org/uniprot/O09024\|https://www.uniprot.org/uniprot/O09023\|https://www.uniprot.org/uniprot/O09022
T5344	453-456	Protein	denotes	RBD	https://www.uniprot.org/uniprot/Q63492\|https://www.uniprot.org/uniprot/Q63491\|https://www.uniprot.org/uniprot/Q62815\|https://www.uniprot.org/uniprot/Q62691\|https://www.uniprot.org/uniprot/Q01542\|https://www.uniprot.org/uniprot/P27732\|https://www.uniprot.org/uniprot/O09024\|https://www.uniprot.org/uniprot/O09023\|https://www.uniprot.org/uniprot/O09022
T5353	465-469	Protein	denotes	ACE2	https://www.uniprot.org/uniprot/Q9UFZ6

LitCovid-sample-PD-FMA

Id	Subject	Object	Predicate	Lexical cue	fma_id
T213	21-28	Body_part	denotes	protein	http://purl.org/sig/ont/fma/fma67257
T214	107-114	Body_part	denotes	protein	http://purl.org/sig/ont/fma/fma67257
T215	361-368	Body_part	denotes	protein	http://purl.org/sig/ont/fma/fma67257

2_test

Id	Subject	Object	Predicate	Lexical cue
32841605-32075877-19659565	230-234	32075877	denotes	2020