PMC:7443692 / 62615-62934 JSONTXT

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T429","span":{"begin":209,"end":221},"obj":"Chemical"},{"id":"T430","span":{"begin":307,"end":318},"obj":"Chemical"}],"attributes":[{"id":"A429","pred":"chebi_id","subj":"T429","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A430","pred":"chebi_id","subj":"T430","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"}],"text":"For further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T168","span":{"begin":33,"end":43},"obj":"Species"},{"id":"T169","span":{"begin":71,"end":81},"obj":"Species"}],"attributes":[{"id":"A168","pred":"ncbi_taxonomy_id","subj":"T168","obj":"NCBItxid:2697049"},{"id":"A169","pred":"ncbi_taxonomy_id","subj":"T169","obj":"NCBItxid:2697049"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"For further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T424","span":{"begin":0,"end":319},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"For further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T102","span":{"begin":33,"end":43},"obj":"Disease"},{"id":"T103","span":{"begin":71,"end":81},"obj":"Disease"}],"attributes":[{"id":"A102","pred":"mondo_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A103","pred":"mondo_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"For further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}

{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T5140","span":{"begin":209,"end":221},"obj":"Protein"}],"attributes":[{"id":"A5140","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q9QSP1"},{"id":"A5141","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q9QJT6"},{"id":"A5142","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q9JGT4"},{"id":"A5143","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q9IPJ6"},{"id":"A5144","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q9DIC6"},{"id":"A5145","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q91DS0"},{"id":"A5146","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q91C28"},{"id":"A5147","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8QQA2"},{"id":"A5148","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8QPE5"},{"id":"A5149","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8QPE4"},{"id":"A5150","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8QPE3"},{"id":"A5151","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8JTH0"},{"id":"A5152","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8BDV6"},{"id":"A5153","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8B6J6"},{"id":"A5154","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8B0I1"},{"id":"A5155","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8B0H6"},{"id":"A5156","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q8B0H1"},{"id":"A5157","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q89669"},{"id":"A5158","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q85213"},{"id":"A5159","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q82706"},{"id":"A5160","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q82683"},{"id":"A5161","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q82020"},{"id":"A5162","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q787B5"},{"id":"A5163","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q77SK0"},{"id":"A5164","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q77N36"},{"id":"A5165","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q76G52"},{"id":"A5166","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q75T09"},{"id":"A5167","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q6X1D5"},{"id":"A5168","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q6X1D1"},{"id":"A5169","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q6TYA0"},{"id":"A5170","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q6E0W7"},{"id":"A5171","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q66T62"},{"id":"A5172","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5VKP3"},{"id":"A5173","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5VKN9"},{"id":"A5174","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5K2K4"},{"id":"A5175","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX93"},{"id":"A5176","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX92"},{"id":"A5177","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX91"},{"id":"A5178","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX90"},{"id":"A5179","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX89"},{"id":"A5180","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX88"},{"id":"A5181","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5IX87"},{"id":"A5182","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q5GA86"},{"id":"A5183","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q58FH1"},{"id":"A5184","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q4VKV3"},{"id":"A5185","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q4F900"},{"id":"A5186","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q49LL3"},{"id":"A5187","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q49IU2"},{"id":"A5188","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q49IU1"},{"id":"A5189","pred":"uniprot_id","subj":"T5140","obj":"https://www.uniprot.org/uniprot/Q49IT9"},{"id":"A5190","pred":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further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T208","span":{"begin":60,"end":67},"obj":"Body_part"},{"id":"T209","span":{"begin":209,"end":221},"obj":"Body_part"},{"id":"T210","span":{"begin":307,"end":318},"obj":"Body_part"}],"attributes":[{"id":"A208","pred":"fma_id","subj":"T208","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A209","pred":"fma_id","subj":"T209","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A210","pred":"fma_id","subj":"T210","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"For further sequence analysis of SARS-CoV-2 S variants, the genomes of SARS-CoV-2 were downloaded from NCBI and GISAID and further processed using Biopython 1.76 to extract all sequences annotated as “surface glycoprotein” and to remove any incomplete sequence as well as any sequence containing unassigned amino acids."}