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PMC:7443692 / 44729-47526 JSONTXT

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LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T232 117-124 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T233 151-158 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T234 252-256 Chemical denotes Tris http://purl.obolibrary.org/obo/CHEBI_9754
T235 263-270 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T236 324-338 Chemical denotes Brilliant Blue http://purl.obolibrary.org/obo/CHEBI_82411
T237 384-398 Chemical denotes Dithiothreitol http://purl.obolibrary.org/obo/CHEBI_18320
T238 461-468 Chemical denotes Trypsin http://purl.obolibrary.org/obo/CHEBI_9765
T239 487-490 Chemical denotes Lys http://purl.obolibrary.org/obo/CHEBI_133538|http://purl.obolibrary.org/obo/CHEBI_18019|http://purl.obolibrary.org/obo/CHEBI_29967
T242 511-514 Chemical denotes Arg http://purl.obolibrary.org/obo/CHEBI_16467|http://purl.obolibrary.org/obo/CHEBI_29952
T244 535-538 Chemical denotes Glu http://purl.obolibrary.org/obo/CHEBI_16015|http://purl.obolibrary.org/obo/CHEBI_18237|http://purl.obolibrary.org/obo/CHEBI_29972
T247 559-562 Chemical denotes Asp http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958
T250 762-767 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T251 905-918 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396
T252 1007-1020 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396
T253 1110-1123 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396
T254 1189-1198 Chemical denotes disulfide http://purl.obolibrary.org/obo/CHEBI_48343
T255 1751-1758 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T256 2175-2178 Chemical denotes Ide http://purl.obolibrary.org/obo/CHEBI_64366

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T118 104-114 Species denotes SARS-CoV-2 NCBItxid:2697049
T119 140-145 Species denotes Human NCBItxid:9606
T120 282-288 Species denotes Fisher NCBItxid:76720
T121 356-362 Species denotes Fisher NCBItxid:76720
T122 923-933 Species denotes SARS-Cov-2 NCBItxid:2697049
T123 940-945 Species denotes human NCBItxid:9606
T124 1025-1035 Species denotes SARS-Cov-2 NCBItxid:2697049
T125 1042-1047 Species denotes human NCBItxid:9606
T126 1128-1138 Species denotes SARS-Cov-2 NCBItxid:2697049
T127 1145-1150 Species denotes human NCBItxid:9606
T128 1217-1227 Species denotes SARS-Cov-2 NCBItxid:2697049
T129 1536-1549 Species denotes Pseudoviruses NCBItxid:186672
T130 1702-1708 Species denotes Fisher NCBItxid:76720
T131 2036-2040 Species denotes Rice NCBItxid:4530

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T266 0-19 Sentence denotes Key Resources Table
T267 20-57 Sentence denotes REAGENT or RESOURCE SOURCE IDENTIFIER
T268 58-103 Sentence denotes Chemicals, Peptides, and Recombinant Proteins
T269 104-139 Sentence denotes SARS-CoV-2 S protein This Study N/A
T270 140-173 Sentence denotes Human ACE2 protein This Study N/A
T271 174-219 Sentence denotes 2x Laemmli sample buffer Bio-Rad Cat#161-0737
T272 220-313 Sentence denotes Invitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2
T273 314-383 Sentence denotes Coomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279
T274 384-422 Sentence denotes Dithiothreitol Sigma Aldrich Cat#43815
T275 423-460 Sentence denotes Iodoacetamide Sigma Aldrich Cat#I1149
T276 461-486 Sentence denotes Trypsin Promega Cat#V5111
T277 487-510 Sentence denotes Lys-C Promega Cat#V1671
T278 511-534 Sentence denotes Arg-C Promega Cat#V1881
T279 535-558 Sentence denotes Glu-C Promega Cat#V1651
T280 559-583 Sentence denotes Asp-N Promega Cat#VA1160
T281 584-619 Sentence denotes Endoglycosidase H Promega Cat#V4871
T282 620-645 Sentence denotes PNGaseF Promega Cat#V4831
T283 646-706 Sentence denotes Chymotrypsin Athens Research and Technology Cat#16-19-030820
T284 707-757 Sentence denotes Alpha lytic protease New England BioLabs Cat#P8113
T285 758-811 Sentence denotes 18O water Cambridge Isotope Laboratories OLM-782-10-1
T286 812-854 Sentence denotes O-protease OpeRATOR Genovis Cat#G1-OP1-020
T287 855-869 Sentence denotes Deposited Data
T288 870-971 Sentence denotes MS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937
T289 972-1073 Sentence denotes MS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940
T290 1074-1176 Sentence denotes MS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938
T291 1177-1250 Sentence denotes MS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939
T292 1251-1326 Sentence denotes MS data for N-linked glycomics deposited at GlycoPost This Study GPST000120
T293 1327-1402 Sentence denotes MS data for O-linked glycomics deposited at GlycoPost This Study GPST000121
T294 1403-1423 Sentence denotes Experimental Models:
T295 1424-1434 Sentence denotes Cell Lines
T296 1435-1463 Sentence denotes 293-F Cells GIBCO Cat#R79007
T297 1464-1489 Sentence denotes Vero-6 Cells ATCC CRL1586
T298 1490-1510 Sentence denotes Experimental Models:
T299 1511-1528 Sentence denotes Organisms/Strains
T300 1529-1564 Sentence denotes VSV(G)-Pseudoviruses This Study N/A
T301 1565-1588 Sentence denotes Software and Algorithms
T302 1589-1669 Sentence denotes pGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html
T303 1670-1735 Sentence denotes Proteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945
T304 1736-1819 Sentence denotes Byonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/
T305 1820-1942 Sentence denotes ProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html
T306 1943-2014 Sentence denotes GRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/
T307 2015-2100 Sentence denotes EMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/
T308 2101-2157 Sentence denotes Biopython v1.76 Cock et al., 2009 https://biopython.org/
T309 2158-2205 Sentence denotes Rpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/
T310 2206-2290 Sentence denotes SignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/
T311 2291-2389 Sentence denotes LibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/
T312 2390-2442 Sentence denotes GlyGen V1.5 York et al., 2020 https://www.glygen.org
T313 2443-2533 Sentence denotes GNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md
T314 2534-2600 Sentence denotes GlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org
T315 2601-2687 Sentence denotes Inkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/
T316 2688-2741 Sentence denotes ffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/
T317 2742-2797 Sentence denotes Cygwin V3.1.5 Cygwin developers https://www.cygwin.com/

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T78 104-114 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T79 923-933 Disease denotes SARS-Cov-2 http://purl.obolibrary.org/obo/MONDO_0100096
T80 1025-1035 Disease denotes SARS-Cov-2 http://purl.obolibrary.org/obo/MONDO_0100096
T81 1128-1138 Disease denotes SARS-Cov-2 http://purl.obolibrary.org/obo/MONDO_0100096
T82 1217-1227 Disease denotes SARS-Cov-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2967 115-124 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T3000 146-150 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T3001 461-468 Protein denotes Trypsin https://www.uniprot.org/uniprot/P83348|https://www.uniprot.org/uniprot/P81524|https://www.uniprot.org/uniprot/P81071|https://www.uniprot.org/uniprot/P70059|https://www.uniprot.org/uniprot/P51588|https://www.uniprot.org/uniprot/P35051|https://www.uniprot.org/uniprot/P35050|https://www.uniprot.org/uniprot/P35048|https://www.uniprot.org/uniprot/P35034|https://www.uniprot.org/uniprot/P19799|https://www.uniprot.org/uniprot/P00764|https://www.uniprot.org/uniprot/P00761|https://www.uniprot.org/uniprot/O97399
T3014 646-658 Protein denotes Chymotrypsin https://www.uniprot.org/uniprot/P81521|https://www.uniprot.org/uniprot/P35002|https://www.uniprot.org/uniprot/O97398
T3017 707-712 Protein denotes Alpha https://www.uniprot.org/uniprot/Q66765|https://www.uniprot.org/uniprot/Q66764|https://www.uniprot.org/uniprot/Q2V6G9|https://www.uniprot.org/uniprot/Q155Z9|https://www.uniprot.org/uniprot/P32540|https://www.uniprot.org/uniprot/P17594|https://www.uniprot.org/uniprot/P17593|https://www.uniprot.org/uniprot/P12296|https://www.uniprot.org/uniprot/P03304|https://www.uniprot.org/uniprot/C0MHL9|https://www.uniprot.org/uniprot/B8XTP8
T3028 719-727 Protein denotes protease https://www.uniprot.org/uniprot/Q9Y6I0|https://www.uniprot.org/uniprot/Q9WJC5|https://www.uniprot.org/uniprot/Q9WF19|https://www.uniprot.org/uniprot/Q9WC63|https://www.uniprot.org/uniprot/Q9WC54|https://www.uniprot.org/uniprot/Q9UKI1|https://www.uniprot.org/uniprot/Q9UKI0|https://www.uniprot.org/uniprot/Q9UKH6|https://www.uniprot.org/uniprot/Q9UKH5|https://www.uniprot.org/uniprot/P04323|https://www.uniprot.org/uniprot/P04023|https://www.uniprot.org/uniprot/P03371|https://www.uniprot.org/uniprot/P03370|https://www.uniprot.org/uniprot/P03369|https://www.uniprot.org/uniprot/P03368|https://www.uniprot.org/uniprot/P03367|https://www.uniprot.org/uniprot/P03366|https://www.uniprot.org/uniprot/P03365|https://www.uniprot.org/uniprot/P03363|https://www.uniprot.org/uniprot/P03362|https://www.uniprot.org/uniprot/P03361|https://www.uniprot.org/uniprot/P03360|https://www.uniprot.org/uniprot/P03359|https://www.uniprot.org/uniprot/P03357|https://www.uniprot.org/uniprot/P03356|https://www.uniprot.org/uniprot/P03355|https://www.uniprot.org/uniprot/P03353|https://www.uniprot.org/uniprot/P03253|https://www.uniprot.org/uniprot/P03252|https://www.uniprot.org/uniprot/P03234|https://www.uniprot.org/uniprot/O93215|https://www.uniprot.org/uniprot/O92808|https://www.uniprot.org/uniprot/O91080|https://www.uniprot.org/uniprot/O89940|https://www.uniprot.org/uniprot/O89811|https://www.uniprot.org/uniprot/O89290|https://www.uniprot.org/uniprot/O73194|https://www.uniprot.org/uniprot/O71150|https://www.uniprot.org/uniprot/O71070|https://www.uniprot.org/uniprot/O56228|https://www.uniprot.org/uniprot/O56227|https://www.uniprot.org/uniprot/O41798|https://www.uniprot.org/uniprot/O40958|https://www.uniprot.org/uniprot/O36367|https://www.uniprot.org/uniprot/O12158|https://www.uniprot.org/uniprot/O09798|https://www.uniprot.org/uniprot/O09777|https://www.uniprot.org/uniprot/D2K3N9|https://www.uniprot.org/uniprot/D2K3N8|https://www.uniprot.org/uniprot/D0UZM9|https://www.uniprot.org/uniprot/A0A0U3TYK5|https://www.uniprot.org/uniprot/A0A0A8IBU6|https://www.uniprot.org/uniprot/Q9UKH4|https://www.uniprot.org/uniprot/Q9QSR3|https://www.uniprot.org/uniprot/Q9QM72|https://www.uniprot.org/uniprot/Q9QJ30|https://www.uniprot.org/uniprot/Q9QBZ9|https://www.uniprot.org/uniprot/Q9QBZ5|https://www.uniprot.org/uniprot/Q9QBZ1|https://www.uniprot.org/uniprot/Q9QBY3|https://www.uniprot.org/uniprot/Q9Q720|https://www.uniprot.org/uniprot/Q9IZT3|https://www.uniprot.org/uniprot/Q9IZT2|https://www.uniprot.org/uniprot/Q9IRA3|https://www.uniprot.org/uniprot/Q9IIH4|https://www.uniprot.org/uniprot/Q9IDV9|https://www.uniprot.org/uniprot/Q9E6P2|https://www.uniprot.org/uniprot/Q9E6P1|https://www.uniprot.org/uniprot/Q96629|https://www.uniprot.org/uniprot/Q91QZ3|https://www.uniprot.org/uniprot/Q8JN66|https://www.uniprot.org/uniprot/Q8I7P9|https://www.uniprot.org/uniprot/Q8AII1|https://www.uniprot.org/uniprot/Q89928|https://www.uniprot.org/uniprot/Q89855|https://www.uniprot.org/uniprot/Q89703|https://www.uniprot.org/uniprot/Q89548|https://www.uniprot.org/uniprot/Q88140|https://www.uniprot.org/uniprot/Q85590|https://www.uniprot.org/uniprot/Q85571|https://www.uniprot.org/uniprot/Q85570|https://www.uniprot.org/uniprot/Q84177|https://www.uniprot.org/uniprot/Q83906|https://www.uniprot.org/uniprot/Q83417|https://www.uniprot.org/uniprot/Q82859|https://www.uniprot.org/uniprot/Q82851|https://www.uniprot.org/uniprot/Q7SVK7|https://www.uniprot.org/uniprot/Q7M6L1|https://www.uniprot.org/uniprot/Q7M6L0|https://www.uniprot.org/uniprot/Q79666|https://www.uniprot.org/uniprot/Q79582|https://www.uniprot.org/uniprot/Q77906|https://www.uniprot.org/uniprot/Q777B6|https://www.uniprot.org/uniprot/Q77373|https://www.uniprot.org/uniprot/Q76634|https://www.uniprot.org/uniprot/Q76629|https://www.uniprot.org/uniprot/Q76605|https://www.uniprot.org/uniprot/Q75002|https://www.uniprot.org/uniprot/Q74120|https://www.uniprot.org/uniprot/Q73368|https://www.uniprot.org/uniprot/Q6UDK6|https://www.uniprot.org/uniprot/Q6UDK5|https://www.uniprot.org/uniprot/Q6SW62|https://www.uniprot.org/uniprot/Q6SW61|https://www.uniprot.org/uniprot/Q6S6T7|https://www.uniprot.org/uniprot/Q6S6T6|https://www.uniprot.org/uniprot/Q69263|https://www.uniprot.org/uniprot/Q69030|https://www.uniprot.org/uniprot/Q66541|https://www.uniprot.org/uniprot/Q65ZF9|https://www.uniprot.org/uniprot/Q65652|https://www.uniprot.org/uniprot/Q65593|https://www.uniprot.org/uniprot/Q64962|https://www.uniprot.org/uniprot/Q61577|https://www.uniprot.org/uniprot/Q5TJ03|https://www.uniprot.org/uniprot/Q4U0X6|https://www.uniprot.org/uniprot/Q3KSP9|https://www.uniprot.org/uniprot/Q2Q1R2|https://www.uniprot.org/uniprot/Q2HRB6|https://www.uniprot.org/uniprot/Q2HRB5|https://www.uniprot.org/uniprot/Q27YG9|https://www.uniprot.org/uniprot/Q1HVC7|https://www.uniprot.org/uniprot/Q18LE3|https://www.uniprot.org/uniprot/Q0R5R3|https://www.uniprot.org/uniprot/Q0R5R2|https://www.uniprot.org/uniprot/Q09SZ9|https://www.uniprot.org/uniprot/Q02836|https://www.uniprot.org/uniprot/Q01002|https://www.uniprot.org/uniprot/P90341|https://www.uniprot.org/uniprot/P89449|https://www.uniprot.org/uniprot/P87563|https://www.uniprot.org/uniprot/P84454|https://www.uniprot.org/uniprot/P68986|https://www.uniprot.org/uniprot/P68985|https://www.uniprot.org/uniprot/P68984|https://www.uniprot.org/uniprot/P63131|https://www.uniprot.org/uniprot/P63129|https://www.uniprot.org/uniprot/P63128|https://www.uniprot.org/uniprot/P63127|https://www.uniprot.org/uniprot/P63125|https://www.uniprot.org/uniprot/P63124|https://www.uniprot.org/uniprot/P63123|https://www.uniprot.org/uniprot/P63122|https://www.uniprot.org/uniprot/P63121|https://www.uniprot.org/uniprot/P63120|https://www.uniprot.org/uniprot/P63119|https://www.uniprot.org/uniprot/P54817|https://www.uniprot.org/uniprot/P52369|https://www.uniprot.org/uniprot/P52351|https://www.uniprot.org/uniprot/P42672|https://www.uniprot.org/uniprot/P35990|https://www.uniprot.org/uniprot/P35963|https://www.uniprot.org/uniprot/P35956|https://www.uniprot.org/uniprot/P33459|https://www.uniprot.org/uniprot/P32542|https://www.uniprot.org/uniprot/P31822|https://www.uniprot.org/uniprot/P30202|https://www.uniprot.org/uniprot/P28936|https://www.uniprot.org/uniprot/P27980|https://www.uniprot.org/uniprot/P27973|https://www.uniprot.org/uniprot/P27528|https://www.uniprot.org/uniprot/P27502|https://www.uniprot.org/uniprot/P26810|https://www.uniprot.org/uniprot/P26809|https://www.uniprot.org/uniprot/P26808|https://www.uniprot.org/uniprot/P25059|https://www.uniprot.org/uniprot/P24740|https://www.uniprot.org/uniprot/P24433|https://www.uniprot.org/uniprot/P24107|https://www.uniprot.org/uniprot/P23984|https://www.uniprot.org/uniprot/P23427|https://www.uniprot.org/uniprot/P23426|https://www.uniprot.org/uniprot/P22382|https://www.uniprot.org/uniprot/P21414|https://www.uniprot.org/uniprot/P20892|https://www.uniprot.org/uniprot/P20876|https://www.uniprot.org/uniprot/P20875|https://www.uniprot.org/uniprot/P20825|https://www.uniprot.org/uniprot/P19561|https://www.uniprot.org/uniprot/P19560|https://www.uniprot.org/uniprot/P19505|https://www.uniprot.org/uniprot/P19202|https://www.uniprot.org/uniprot/P19199|https://www.uniprot.org/uniprot/P19151|https://www.uniprot.org/uniprot/P19119|https://www.uniprot.org/uniprot/P19028|https://www.uniprot.org/uniprot/P18802|https://www.uniprot.org/uniprot/P18096|https://www.uniprot.org/uniprot/P18042|https://www.uniprot.org/uniprot/P17965|https://www.uniprot.org/uniprot/P17757|https://www.uniprot.org/uniprot/P17283|https://www.uniprot.org/uniprot/P16901|https://www.uniprot.org/uniprot/P16753|https://www.uniprot.org/uniprot/P16423|https://www.uniprot.org/uniprot/P16088|https://www.uniprot.org/uniprot/P16046|https://www.uniprot.org/uniprot/P15833|https://www.uniprot.org/uniprot/P14078|https://www.uniprot.org/uniprot/P14074|https://www.uniprot.org/uniprot/P12502|https://www.uniprot.org/uniprot/P12499|https://www.uniprot.org/uniprot/P12498|https://www.uniprot.org/uniprot/P12497|https://www.uniprot.org/uniprot/P12451|https://www.uniprot.org/uniprot/P11826|https://www.uniprot.org/uniprot/P11825|https://www.uniprot.org/uniprot/P11365|https://www.uniprot.org/uniprot/P11283|https://www.uniprot.org/uniprot/P11227|https://www.uniprot.org/uniprot/P11204|https://www.uniprot.org/uniprot/P10394|https://www.uniprot.org/uniprot/P10381|https://www.uniprot.org/uniprot/P10274|https://www.uniprot.org/uniprot/P10273|https://www.uniprot.org/uniprot/P10272|https://www.uniprot.org/uniprot/P10271|https://www.uniprot.org/uniprot/P10270|https://www.uniprot.org/uniprot/P10265|https://www.uniprot.org/uniprot/P10210|https://www.uniprot.org/uniprot/P0DOI1|https://www.uniprot.org/uniprot/P0DOI0|https://www.uniprot.org/uniprot/P0C6F2|https://www.uniprot.org/uniprot/P0C211|https://www.uniprot.org/uniprot/P0C210|https://www.uniprot.org/uniprot/P09569|https://www.uniprot.org/uniprot/P09286|https://www.uniprot.org/uniprot/P08361|https://www.uniprot.org/uniprot/P07885|https://www.uniprot.org/uniprot/P05962|https://www.uniprot.org/uniprot/P05961|https://www.uniprot.org/uniprot/P05960|https://www.uniprot.org/uniprot/P05959|https://www.uniprot.org/uniprot/P05897|https://www.uniprot.org/uniprot/P05896|https://www.uniprot.org/uniprot/P05895|https://www.uniprot.org/uniprot/P04589|https://www.uniprot.org/uniprot/P04588|https://www.uniprot.org/uniprot/P04587|https://www.uniprot.org/uniprot/P04585|https://www.uniprot.org/uniprot/P04584|https://www.uniprot.org/uniprot/Q1HVC6|https://www.uniprot.org/uniprot/Q1A267|https://www.uniprot.org/uniprot/Q1A249
T3272 814-822 Protein denotes protease https://www.uniprot.org/uniprot/Q9Y6I0|https://www.uniprot.org/uniprot/Q9WJC5|https://www.uniprot.org/uniprot/Q9WF19|https://www.uniprot.org/uniprot/Q9WC63|https://www.uniprot.org/uniprot/Q9WC54|https://www.uniprot.org/uniprot/Q9UKI1|https://www.uniprot.org/uniprot/Q9UKI0|https://www.uniprot.org/uniprot/Q9UKH6|https://www.uniprot.org/uniprot/Q9UKH5|https://www.uniprot.org/uniprot/P04323|https://www.uniprot.org/uniprot/P04023|https://www.uniprot.org/uniprot/P03371|https://www.uniprot.org/uniprot/P03370|https://www.uniprot.org/uniprot/P03369|https://www.uniprot.org/uniprot/P03368|https://www.uniprot.org/uniprot/P03367|https://www.uniprot.org/uniprot/P03366|https://www.uniprot.org/uniprot/P03365|https://www.uniprot.org/uniprot/P03363|https://www.uniprot.org/uniprot/P03362|https://www.uniprot.org/uniprot/P03361|https://www.uniprot.org/uniprot/P03360|https://www.uniprot.org/uniprot/P03359|https://www.uniprot.org/uniprot/P03357|https://www.uniprot.org/uniprot/P03356|https://www.uniprot.org/uniprot/P03355|https://www.uniprot.org/uniprot/P03353|https://www.uniprot.org/uniprot/P03253|https://www.uniprot.org/uniprot/P03252|https://www.uniprot.org/uniprot/P03234|https://www.uniprot.org/uniprot/O93215|https://www.uniprot.org/uniprot/O92808|https://www.uniprot.org/uniprot/O91080|https://www.uniprot.org/uniprot/O89940|https://www.uniprot.org/uniprot/O89811|https://www.uniprot.org/uniprot/O89290|https://www.uniprot.org/uniprot/O73194|https://www.uniprot.org/uniprot/O71150|https://www.uniprot.org/uniprot/O71070|https://www.uniprot.org/uniprot/O56228|https://www.uniprot.org/uniprot/O56227|https://www.uniprot.org/uniprot/O41798|https://www.uniprot.org/uniprot/O40958|https://www.uniprot.org/uniprot/O36367|https://www.uniprot.org/uniprot/O12158|https://www.uniprot.org/uniprot/O09798|https://www.uniprot.org/uniprot/O09777|https://www.uniprot.org/uniprot/D2K3N9|https://www.uniprot.org/uniprot/D2K3N8|https://www.uniprot.org/uniprot/D0UZM9|https://www.uniprot.org/uniprot/A0A0U3TYK5|https://www.uniprot.org/uniprot/A0A0A8IBU6|https://www.uniprot.org/uniprot/Q9UKH4|https://www.uniprot.org/uniprot/Q9QSR3|https://www.uniprot.org/uniprot/Q9QM72|https://www.uniprot.org/uniprot/Q9QJ30|https://www.uniprot.org/uniprot/Q9QBZ9|https://www.uniprot.org/uniprot/Q9QBZ5|https://www.uniprot.org/uniprot/Q9QBZ1|https://www.uniprot.org/uniprot/Q9QBY3|https://www.uniprot.org/uniprot/Q9Q720|https://www.uniprot.org/uniprot/Q9IZT3|https://www.uniprot.org/uniprot/Q9IZT2|https://www.uniprot.org/uniprot/Q9IRA3|https://www.uniprot.org/uniprot/Q9IIH4|https://www.uniprot.org/uniprot/Q9IDV9|https://www.uniprot.org/uniprot/Q9E6P2|https://www.uniprot.org/uniprot/Q9E6P1|https://www.uniprot.org/uniprot/Q96629|https://www.uniprot.org/uniprot/Q91QZ3|https://www.uniprot.org/uniprot/Q8JN66|https://www.uniprot.org/uniprot/Q8I7P9|https://www.uniprot.org/uniprot/Q8AII1|https://www.uniprot.org/uniprot/Q89928|https://www.uniprot.org/uniprot/Q89855|https://www.uniprot.org/uniprot/Q89703|https://www.uniprot.org/uniprot/Q89548|https://www.uniprot.org/uniprot/Q88140|https://www.uniprot.org/uniprot/Q85590|https://www.uniprot.org/uniprot/Q85571|https://www.uniprot.org/uniprot/Q85570|https://www.uniprot.org/uniprot/Q84177|https://www.uniprot.org/uniprot/Q83906|https://www.uniprot.org/uniprot/Q83417|https://www.uniprot.org/uniprot/Q82859|https://www.uniprot.org/uniprot/Q82851|https://www.uniprot.org/uniprot/Q7SVK7|https://www.uniprot.org/uniprot/Q7M6L1|https://www.uniprot.org/uniprot/Q7M6L0|https://www.uniprot.org/uniprot/Q79666|https://www.uniprot.org/uniprot/Q79582|https://www.uniprot.org/uniprot/Q77906|https://www.uniprot.org/uniprot/Q777B6|https://www.uniprot.org/uniprot/Q77373|https://www.uniprot.org/uniprot/Q76634|https://www.uniprot.org/uniprot/Q76629|https://www.uniprot.org/uniprot/Q76605|https://www.uniprot.org/uniprot/Q75002|https://www.uniprot.org/uniprot/Q74120|https://www.uniprot.org/uniprot/Q73368|https://www.uniprot.org/uniprot/Q6UDK6|https://www.uniprot.org/uniprot/Q6UDK5|https://www.uniprot.org/uniprot/Q6SW62|https://www.uniprot.org/uniprot/Q6SW61|https://www.uniprot.org/uniprot/Q6S6T7|https://www.uniprot.org/uniprot/Q6S6T6|https://www.uniprot.org/uniprot/Q69263|https://www.uniprot.org/uniprot/Q69030|https://www.uniprot.org/uniprot/Q66541|https://www.uniprot.org/uniprot/Q65ZF9|https://www.uniprot.org/uniprot/Q65652|https://www.uniprot.org/uniprot/Q65593|https://www.uniprot.org/uniprot/Q64962|https://www.uniprot.org/uniprot/Q61577|https://www.uniprot.org/uniprot/Q5TJ03|https://www.uniprot.org/uniprot/Q4U0X6|https://www.uniprot.org/uniprot/Q3KSP9|https://www.uniprot.org/uniprot/Q2Q1R2|https://www.uniprot.org/uniprot/Q2HRB6|https://www.uniprot.org/uniprot/Q2HRB5|https://www.uniprot.org/uniprot/Q27YG9|https://www.uniprot.org/uniprot/Q1HVC7|https://www.uniprot.org/uniprot/Q18LE3|https://www.uniprot.org/uniprot/Q0R5R3|https://www.uniprot.org/uniprot/Q0R5R2|https://www.uniprot.org/uniprot/Q09SZ9|https://www.uniprot.org/uniprot/Q02836|https://www.uniprot.org/uniprot/Q01002|https://www.uniprot.org/uniprot/P90341|https://www.uniprot.org/uniprot/P89449|https://www.uniprot.org/uniprot/P87563|https://www.uniprot.org/uniprot/P84454|https://www.uniprot.org/uniprot/P68986|https://www.uniprot.org/uniprot/P68985|https://www.uniprot.org/uniprot/P68984|https://www.uniprot.org/uniprot/P63131|https://www.uniprot.org/uniprot/P63129|https://www.uniprot.org/uniprot/P63128|https://www.uniprot.org/uniprot/P63127|https://www.uniprot.org/uniprot/P63125|https://www.uniprot.org/uniprot/P63124|https://www.uniprot.org/uniprot/P63123|https://www.uniprot.org/uniprot/P63122|https://www.uniprot.org/uniprot/P63121|https://www.uniprot.org/uniprot/P63120|https://www.uniprot.org/uniprot/P63119|https://www.uniprot.org/uniprot/P54817|https://www.uniprot.org/uniprot/P52369|https://www.uniprot.org/uniprot/P52351|https://www.uniprot.org/uniprot/P42672|https://www.uniprot.org/uniprot/P35990|https://www.uniprot.org/uniprot/P35963|https://www.uniprot.org/uniprot/P35956|https://www.uniprot.org/uniprot/P33459|https://www.uniprot.org/uniprot/P32542|https://www.uniprot.org/uniprot/P31822|https://www.uniprot.org/uniprot/P30202|https://www.uniprot.org/uniprot/P28936|https://www.uniprot.org/uniprot/P27980|https://www.uniprot.org/uniprot/P27973|https://www.uniprot.org/uniprot/P27528|https://www.uniprot.org/uniprot/P27502|https://www.uniprot.org/uniprot/P26810|https://www.uniprot.org/uniprot/P26809|https://www.uniprot.org/uniprot/P26808|https://www.uniprot.org/uniprot/P25059|https://www.uniprot.org/uniprot/P24740|https://www.uniprot.org/uniprot/P24433|https://www.uniprot.org/uniprot/P24107|https://www.uniprot.org/uniprot/P23984|https://www.uniprot.org/uniprot/P23427|https://www.uniprot.org/uniprot/P23426|https://www.uniprot.org/uniprot/P22382|https://www.uniprot.org/uniprot/P21414|https://www.uniprot.org/uniprot/P20892|https://www.uniprot.org/uniprot/P20876|https://www.uniprot.org/uniprot/P20875|https://www.uniprot.org/uniprot/P20825|https://www.uniprot.org/uniprot/P19561|https://www.uniprot.org/uniprot/P19560|https://www.uniprot.org/uniprot/P19505|https://www.uniprot.org/uniprot/P19202|https://www.uniprot.org/uniprot/P19199|https://www.uniprot.org/uniprot/P19151|https://www.uniprot.org/uniprot/P19119|https://www.uniprot.org/uniprot/P19028|https://www.uniprot.org/uniprot/P18802|https://www.uniprot.org/uniprot/P18096|https://www.uniprot.org/uniprot/P18042|https://www.uniprot.org/uniprot/P17965|https://www.uniprot.org/uniprot/P17757|https://www.uniprot.org/uniprot/P17283|https://www.uniprot.org/uniprot/P16901|https://www.uniprot.org/uniprot/P16753|https://www.uniprot.org/uniprot/P16423|https://www.uniprot.org/uniprot/P16088|https://www.uniprot.org/uniprot/P16046|https://www.uniprot.org/uniprot/P15833|https://www.uniprot.org/uniprot/P14078|https://www.uniprot.org/uniprot/P14074|https://www.uniprot.org/uniprot/P12502|https://www.uniprot.org/uniprot/P12499|https://www.uniprot.org/uniprot/P12498|https://www.uniprot.org/uniprot/P12497|https://www.uniprot.org/uniprot/P12451|https://www.uniprot.org/uniprot/P11826|https://www.uniprot.org/uniprot/P11825|https://www.uniprot.org/uniprot/P11365|https://www.uniprot.org/uniprot/P11283|https://www.uniprot.org/uniprot/P11227|https://www.uniprot.org/uniprot/P11204|https://www.uniprot.org/uniprot/P10394|https://www.uniprot.org/uniprot/P10381|https://www.uniprot.org/uniprot/P10274|https://www.uniprot.org/uniprot/P10273|https://www.uniprot.org/uniprot/P10272|https://www.uniprot.org/uniprot/P10271|https://www.uniprot.org/uniprot/P10270|https://www.uniprot.org/uniprot/P10265|https://www.uniprot.org/uniprot/P10210|https://www.uniprot.org/uniprot/P0DOI1|https://www.uniprot.org/uniprot/P0DOI0|https://www.uniprot.org/uniprot/P0C6F2|https://www.uniprot.org/uniprot/P0C211|https://www.uniprot.org/uniprot/P0C210|https://www.uniprot.org/uniprot/P09569|https://www.uniprot.org/uniprot/P09286|https://www.uniprot.org/uniprot/P08361|https://www.uniprot.org/uniprot/P07885|https://www.uniprot.org/uniprot/P05962|https://www.uniprot.org/uniprot/P05961|https://www.uniprot.org/uniprot/P05960|https://www.uniprot.org/uniprot/P05959|https://www.uniprot.org/uniprot/P05897|https://www.uniprot.org/uniprot/P05896|https://www.uniprot.org/uniprot/P05895|https://www.uniprot.org/uniprot/P04589|https://www.uniprot.org/uniprot/P04588|https://www.uniprot.org/uniprot/P04587|https://www.uniprot.org/uniprot/P04585|https://www.uniprot.org/uniprot/P04584|https://www.uniprot.org/uniprot/Q1HVC6|https://www.uniprot.org/uniprot/Q1A267|https://www.uniprot.org/uniprot/Q1A249
T3516 847-850 Protein denotes OP1 https://www.uniprot.org/uniprot/Q9R1M5|https://www.uniprot.org/uniprot/Q9JLR2|https://www.uniprot.org/uniprot/Q7TPU9|https://www.uniprot.org/uniprot/Q6XZF2|https://www.uniprot.org/uniprot/Q6VSG5|https://www.uniprot.org/uniprot/Q6VSG4|https://www.uniprot.org/uniprot/Q6VSG3|https://www.uniprot.org/uniprot/Q6VSG2|https://www.uniprot.org/uniprot/Q6VSG1|https://www.uniprot.org/uniprot/Q6VSG0|https://www.uniprot.org/uniprot/Q6VSF9|https://www.uniprot.org/uniprot/Q5VJT0|https://www.uniprot.org/uniprot/Q5VJS8|https://www.uniprot.org/uniprot/Q53ZD5|https://www.uniprot.org/uniprot/Q3UXD0|https://www.uniprot.org/uniprot/P83313
T3532 946-950 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T3533 1048-1052 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T3534 1151-1155 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T3535 1720-1723 Protein denotes CAT https://www.uniprot.org/uniprot/Q9BW16|https://www.uniprot.org/uniprot/Q923A6|https://www.uniprot.org/uniprot/Q704S8|https://www.uniprot.org/uniprot/Q5T952|https://www.uniprot.org/uniprot/Q3V1Y3|https://www.uniprot.org/uniprot/Q3TCG3|https://www.uniprot.org/uniprot/P52826|https://www.uniprot.org/uniprot/P47934|https://www.uniprot.org/uniprot/P43155

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T139 882-886 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T140 984-988 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T141 1424-1428 http://purl.obolibrary.org/obo/CL_0000000 denotes Cell
T142 1441-1446 http://purl.obolibrary.org/obo/CL_0000000 denotes Cells
T143 1471-1476 http://purl.obolibrary.org/obo/CL_0000000 denotes Cells
T144 1511-1520 http://purl.obolibrary.org/obo/OBI_0100026 denotes Organisms
T145 1803-1811 http://purl.obolibrary.org/obo/IDO_0000607 denotes products

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T132 95-103 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T133 117-124 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T134 151-158 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T135 263-270 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T136 905-918 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784
T137 1007-1020 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784
T138 1110-1123 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784
T139 1424-1428 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T140 1441-1446 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T141 1471-1476 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T142 1751-1758 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T108 511-516 http://purl.obolibrary.org/obo/GO_0043870 denotes Arg-C
T109 620-627 http://purl.obolibrary.org/obo/GO_0000224 denotes PNGaseF
T110 1720-1723 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT

2_test

Id Subject Object Predicate Lexical cue
32841605-28874712-19659543 1615-1619 28874712 denotes 2017
32841605-30913289-19659544 1980-1984 30913289 denotes 2019
32841605-10827456-19659545 2049-2053 10827456 denotes 2000
32841605-19304878-19659546 2130-2134 19304878 denotes 2009
32841605-30778233-19659547 2246-2250 30778233 denotes 2019
32841605-31616925-19659548 2415-2419 31616925 denotes 2020
32841605-26476458-19659549 2574-2578 26476458 denotes 2016