PMC:7443692 / 43035-44713
Annnotations
LitCovid-sample-MedDRA
| Id | Subject | Object | Predicate | Lexical cue | meddra_id |
|---|---|---|---|---|---|
| T14 | 1635-1658 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | neutralizing antibodies | http://purl.bioontology.org/ontology/MEDDRA/10058063 |
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T229 | 419-426 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T230 | 575-583 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T231 | 843-850 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T114 | 430-440 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T115 | 546-551 | Species | denotes | human | NCBItxid:9606 |
| T116 | 968-981 | Species | denotes | pseudoviruses | NCBItxid:186672 |
| T117 | 1037-1047 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T258 | 0-334 | Sentence | denotes | The data presented here, and related similar recent findings (Casalino et al., 2020; Watanabe et al., 2020a; Wrobel et al., 2020), provide a framework to facilitate the production of immunogens, vaccines, antibodies, and inhibitors as well as additional information regarding mechanisms by which glycan microheterogeneity is achieved. |
| T259 | 335-469 | Sentence | denotes | However, considerable efforts still remain in order to fully understand the role of glycans in SARS-CoV-2 infection and pathogenicity. |
| T260 | 470-719 | Sentence | denotes | Although HEK-expressed S and ACE2 provide a useful window for understanding human glycosylation of these proteins, glycoproteomic characterization after expression in cell lines of more direct relevance to disease and target tissue is sorely needed. |
| T261 | 720-917 | Sentence | denotes | Although site occupancy could change depending on presentation and cell type (Struwe et al., 2018), processing of N-linked glycans will almost certainly be altered in a cell-type-dependent fashion. |
| T262 | 918-1209 | Sentence | denotes | Thus, analyses of the Spike trimer extracted from pseudoviruses, virion-like particles, and ultimately from infectious SARS-CoV-2 virions harvested from airway cells or patients will provide the most accurate view of how trimer immunogens reflect the true glycosylation pattern of the virus. |
| T263 | 1210-1417 | Sentence | denotes | Detailed analyses of the impact of emerging variants in S and natural and designed-for-biologics variants of ACE2 on glycosylation and binding properties are important next steps for developing therapeutics. |
| T264 | 1418-1678 | Sentence | denotes | Finally, it will be important to monitor the slow evolution of the virus to determine if existing sites of glycosylation are lost or new sites emerge with selective pressure that might alter the efficacy of vaccines, neutralizing antibodies, and/or inhibitors. |
LitCovid-sample-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 695-701 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T73 | 430-440 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T74 | 441-450 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T75 | 1026-1036 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T76 | 1037-1047 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T2938 | 479-482 | Protein | denotes | HEK | https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320 |
| T2941 | 499-503 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
| T2942 | 1319-1323 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
LitCovid-sample-PD-IDO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T124 | 169-179 | http://purl.obolibrary.org/obo/IDO_0000607 | denotes | production |
| T125 | 441-450 | http://purl.obolibrary.org/obo/IDO_0000586 | denotes | infection |
| T126 | 455-468 | http://purl.obolibrary.org/obo/IDO_0000450 | denotes | pathogenicity |
| T127 | 637-641 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T128 | 676-683 | http://purl.obolibrary.org/obo/OGMS_0000031 | denotes | disease |
| T129 | 729-733 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | site |
| T130 | 787-791 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T131 | 889-893 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
| T132 | 983-989 | http://purl.obolibrary.org/obo/IDO_0000508 | denotes | virion |
| T133 | 1048-1055 | http://purl.obolibrary.org/obo/IDO_0000508 | denotes | virions |
| T134 | 1078-1083 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
| T135 | 1203-1208 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T136 | 1485-1490 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T137 | 1516-1521 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
| T138 | 1555-1560 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T126 | 575-583 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T127 | 637-641 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T128 | 695-701 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T129 | 787-791 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T130 | 889-893 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T131 | 1078-1083 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T104 | 552-565 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T105 | 1174-1187 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T106 | 1327-1340 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T107 | 1525-1538 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T100 | 552-565 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T101 | 1174-1187 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T102 | 1327-1340 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T103 | 1525-1538 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32841605-32647346-19659541 | 124-128 | 32647346 | denotes | 2020 |
| 32841605-30134158-19659542 | 813-817 | 30134158 | denotes | 2018 |