PMC:7443692 / 40580-41565
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7443692","sourcedb":"PMC","sourceid":"7443692","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7443692","text":"We observed glycan-mediated interactions between the S trimer and glycans at N090, N322, and N546 of ACE2. Thus, variations in glycan occupancy or processing at these sites could alter the affinity of the SARS-CoV-2–ACE2 interaction and modulate infectivity. It is well established that glycosylation states vary depending on tissue and cell type as well as in the case of humans, on age (Krištić et al., 2014), underlying disease (Pavić et al., 2018; Rudman et al., 2019), and ethnicity (Gebrehiwot et al., 2018). Thus, glycosylation portfolios could in part be responsible for tissue tropism and individual susceptibility to infection. The importance of glycosylation for S binding to ACE2 is even more emphatically demonstrated by the direct glycan-glycan interactions observed (Figure 7) between S glycans (at N0074 and N0165) and an ACE2 receptor glycan (at N546), adding an additional layer of complexity for interpreting the impact of glycosylation on individual susceptibility.","tracks":[{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T225","span":{"begin":66,"end":73},"obj":"Chemical"},{"id":"T226","span":{"begin":802,"end":809},"obj":"Chemical"}],"attributes":[{"id":"A225","pred":"chebi_id","subj":"T225","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A226","pred":"chebi_id","subj":"T226","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"subj":"T225","pred":"source","obj":"LitCovid-sample-CHEBI"},{"subj":"T226","pred":"source","obj":"LitCovid-sample-CHEBI"}]},{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T106","span":{"begin":205,"end":215},"obj":"Species"},{"id":"T107","span":{"begin":373,"end":379},"obj":"Species"}],"attributes":[{"id":"A106","pred":"ncbi_taxonomy_id","subj":"T106","obj":"NCBItxid:2697049"},{"id":"A107","pred":"ncbi_taxonomy_id","subj":"T107","obj":"NCBItxid:9605"},{"subj":"T106","pred":"source","obj":"LitCovid-sample-PD-NCBITaxon"},{"subj":"T107","pred":"source","obj":"LitCovid-sample-PD-NCBITaxon"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}]},{"project":"LitCovid-sample-sentences","denotations":[{"id":"T246","span":{"begin":0,"end":106},"obj":"Sentence"},{"id":"T247","span":{"begin":107,"end":258},"obj":"Sentence"},{"id":"T248","span":{"begin":259,"end":514},"obj":"Sentence"},{"id":"T249","span":{"begin":515,"end":637},"obj":"Sentence"},{"id":"T250","span":{"begin":638,"end":985},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T246","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T247","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T248","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T249","pred":"source","obj":"LitCovid-sample-sentences"},{"subj":"T250","pred":"source","obj":"LitCovid-sample-sentences"}]},{"project":"LitCovid-sample-PD-UBERON","denotations":[{"id":"T3","span":{"begin":326,"end":332},"obj":"Body_part"},{"id":"T4","span":{"begin":579,"end":585},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"subj":"T3","pred":"source","obj":"LitCovid-sample-PD-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-sample-PD-UBERON"}]},{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T66","span":{"begin":205,"end":215},"obj":"Disease"},{"id":"T67","span":{"begin":627,"end":636},"obj":"Disease"}],"attributes":[{"id":"A66","pred":"mondo_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A67","pred":"mondo_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T66","pred":"source","obj":"LitCovid-sample-PD-MONDO"},{"subj":"T67","pred":"source","obj":"LitCovid-sample-PD-MONDO"}]},{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T2927","span":{"begin":101,"end":105},"obj":"Protein"},{"id":"T2928","span":{"begin":216,"end":220},"obj":"Protein"},{"id":"T2929","span":{"begin":687,"end":691},"obj":"Protein"},{"id":"T2930","span":{"begin":838,"end":842},"obj":"Protein"}],"attributes":[{"id":"A2927","pred":"uniprot_id","subj":"T2927","obj":"https://www.uniprot.org/uniprot/Q9UFZ6"},{"id":"A2928","pred":"uniprot_id","subj":"T2928","obj":"https://www.uniprot.org/uniprot/Q9UFZ6"},{"id":"A2929","pred":"uniprot_id","subj":"T2929","obj":"https://www.uniprot.org/uniprot/Q9UFZ6"},{"id":"A2930","pred":"uniprot_id","subj":"T2930","obj":"https://www.uniprot.org/uniprot/Q9UFZ6"},{"subj":"T2927","pred":"source","obj":"LitCovid-sample-UniProt"},{"subj":"T2928","pred":"source","obj":"LitCovid-sample-UniProt"},{"subj":"T2929","pred":"source","obj":"LitCovid-sample-UniProt"},{"subj":"T2930","pred":"source","obj":"LitCovid-sample-UniProt"}]},{"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T112","span":{"begin":167,"end":172},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"},{"id":"T113","span":{"begin":246,"end":257},"obj":"http://purl.obolibrary.org/obo/IDO_0000464"},{"id":"T114","span":{"begin":337,"end":341},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T115","span":{"begin":423,"end":430},"obj":"http://purl.obolibrary.org/obo/OGMS_0000031"},{"id":"T116","span":{"begin":609,"end":623},"obj":"http://purl.obolibrary.org/obo/IDO_0000467"},{"id":"T117","span":{"begin":627,"end":636},"obj":"http://purl.obolibrary.org/obo/IDO_0000586"},{"id":"T118","span":{"begin":970,"end":984},"obj":"http://purl.obolibrary.org/obo/IDO_0000467"}],"attributes":[{"subj":"T112","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T113","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T114","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T115","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T116","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T117","pred":"source","obj":"LitCovid-sample-PD-IDO"},{"subj":"T118","pred":"source","obj":"LitCovid-sample-PD-IDO"}]},{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T120","span":{"begin":326,"end":332},"obj":"Body_part"},{"id":"T121","span":{"begin":337,"end":341},"obj":"Body_part"},{"id":"T122","span":{"begin":579,"end":585},"obj":"Body_part"}],"attributes":[{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma9637"},{"subj":"T120","pred":"source","obj":"LitCovid-sample-PD-FMA"},{"subj":"T121","pred":"source","obj":"LitCovid-sample-PD-FMA"},{"subj":"T122","pred":"source","obj":"LitCovid-sample-PD-FMA"}]},{"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T94","span":{"begin":287,"end":300},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T95","span":{"begin":521,"end":534},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T96","span":{"begin":586,"end":593},"obj":"http://purl.obolibrary.org/obo/GO_0009606"},{"id":"T97","span":{"begin":656,"end":669},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T98","span":{"begin":942,"end":955},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"attributes":[{"subj":"T94","pred":"source","obj":"LitCovid-sample-PD-GO-BP-0"},{"subj":"T95","pred":"source","obj":"LitCovid-sample-PD-GO-BP-0"},{"subj":"T96","pred":"source","obj":"LitCovid-sample-PD-GO-BP-0"},{"subj":"T97","pred":"source","obj":"LitCovid-sample-PD-GO-BP-0"},{"subj":"T98","pred":"source","obj":"LitCovid-sample-PD-GO-BP-0"}]},{"project":"LitCovid-sample-PD-HP","denotations":[{"id":"T1","span":{"begin":609,"end":636},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002719"},{"subj":"T1","pred":"source","obj":"LitCovid-sample-PD-HP"}]},{"project":"LitCovid-sample-GO-BP","denotations":[{"id":"T90","span":{"begin":287,"end":300},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T91","span":{"begin":521,"end":534},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T92","span":{"begin":586,"end":593},"obj":"http://purl.obolibrary.org/obo/GO_0009606"},{"id":"T93","span":{"begin":656,"end":669},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T94","span":{"begin":942,"end":955},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"attributes":[{"subj":"T90","pred":"source","obj":"LitCovid-sample-GO-BP"},{"subj":"T91","pred":"source","obj":"LitCovid-sample-GO-BP"},{"subj":"T92","pred":"source","obj":"LitCovid-sample-GO-BP"},{"subj":"T93","pred":"source","obj":"LitCovid-sample-GO-BP"},{"subj":"T94","pred":"source","obj":"LitCovid-sample-GO-BP"}]},{"project":"2_test","denotations":[{"id":"32841605-24325898-19659536","span":{"begin":405,"end":409},"obj":"24325898"},{"id":"32841605-30463578-19659537","span":{"begin":446,"end":450},"obj":"30463578"},{"id":"32841605-31215021-19659538","span":{"begin":467,"end":471},"obj":"31215021"},{"id":"32841605-30592755-19659539","span":{"begin":508,"end":512},"obj":"30592755"}],"attributes":[{"subj":"32841605-24325898-19659536","pred":"source","obj":"2_test"},{"subj":"32841605-30463578-19659537","pred":"source","obj":"2_test"},{"subj":"32841605-31215021-19659538","pred":"source","obj":"2_test"},{"subj":"32841605-30592755-19659539","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-sample-CHEBI","color":"#93b6ec","default":true},{"id":"LitCovid-sample-PD-NCBITaxon","color":"#d0ec93"},{"id":"LitCovid-sample-sentences","color":"#ec93ea"},{"id":"LitCovid-sample-PD-UBERON","color":"#93ecd3"},{"id":"LitCovid-sample-PD-MONDO","color":"#ecb993"},{"id":"LitCovid-sample-UniProt","color":"#9f93ec"},{"id":"LitCovid-sample-PD-IDO","color":"#a0ec93"},{"id":"LitCovid-sample-PD-FMA","color":"#ec93ba"},{"id":"LitCovid-sample-PD-GO-BP-0","color":"#93d4ec"},{"id":"LitCovid-sample-PD-HP","color":"#ecea93"},{"id":"LitCovid-sample-GO-BP","color":"#d093ec"},{"id":"2_test","color":"#93ecb5"}]}]}}