PMC:7443692 / 29556-30919
Annnotations
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T183 | 316-319 | Chemical | denotes | ion | http://purl.obolibrary.org/obo/CHEBI_24870 |
| T184 | 373-381 | Chemical | denotes | N-glycan | http://purl.obolibrary.org/obo/CHEBI_59520 |
| T185 | 439-446 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T186 | 536-544 | Chemical | denotes | N-glycan | http://purl.obolibrary.org/obo/CHEBI_59520 |
| T187 | 1027-1034 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T79 | 55-60 | Species | denotes | Human | NCBItxid:9606 |
| T80 | 678-683 | Species | denotes | human | NCBItxid:9606 |
| T81 | 1174-1184 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T166 | 0-120 | Sentence | denotes | Figure 5 Glycomics-Informed Glycoproteomics of Soluble Human ACE2 Reveals High Occupancy, Complex N-linked Glycosylation |
| T167 | 121-209 | Sentence | denotes | (A) Glycans released from soluble, purified ACE2 were permethylated and analyzed by MSn. |
| T168 | 210-328 | Sentence | denotes | Structures were assigned, grouped by type and structural features, and prevalence was determined based on ion current. |
| T169 | 329-387 | Sentence | denotes | The pie chart shows basic division by broad N-glycan type. |
| T170 | 388-456 | Sentence | denotes | The bar graph provides additional detail about the glycans detected. |
| T171 | 457-630 | Sentence | denotes | The most abundant structure with a unique categorization by glycomics for each N-glycan type in the pie chart, or above each feature category in the bar graph, is indicated. |
| T172 | 631-836 | Sentence | denotes | (B–G) Glycopeptides were prepared from soluble human ACE2 by using multiple combinations of proteases, analyzed by LC-MSn, and the resulting data were searched by using several different software packages. |
| T173 | 837-896 | Sentence | denotes | All six sites of N-linked glycosylation are presented here. |
| T174 | 897-1011 | Sentence | denotes | Displayed in the bar graphs are the individual compositions observed graphed in terms of assigned spectral counts. |
| T175 | 1012-1132 | Sentence | denotes | Representative glycans (as determined by glycomics analysis) for several abundant compositions are shown in SNFG format. |
| T176 | 1133-1249 | Sentence | denotes | The pie chart (analogous to Figure 3 for SARS-CoV-2 S) for each site is displayed in the upper corner of each panel. |
| T177 | 1250-1259 | Sentence | denotes | (B) N053. |
| T178 | 1260-1269 | Sentence | denotes | (C) N090. |
| T179 | 1270-1279 | Sentence | denotes | (D) N103. |
| T180 | 1280-1289 | Sentence | denotes | (E) N322. |
| T181 | 1290-1299 | Sentence | denotes | (F) N432. |
| T182 | 1300-1363 | Sentence | denotes | (G) N546, a site that does not exist in three in 10,000 people. |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T58 | 1174-1184 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T2031 | 61-65 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
| T2032 | 165-169 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
| T2033 | 684-688 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
LitCovid-sample-PD-IDO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T88 | 845-850 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
| T89 | 1197-1201 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | site |
| T90 | 1312-1316 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | site |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T97 | 637-650 | Body_part | denotes | Glycopeptides | http://purl.org/sig/ont/fma/fma82784 |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T71 | 107-120 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | Glycosylation |
| T72 | 863-876 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T67 | 107-120 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | Glycosylation |
| T68 | 863-876 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-Glycan
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T94 | 837-840 | https://glytoucan.org/Structures/Glycans/G05518TD | denotes | All |