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PMC:7443692 / 12773-13789 JSONTXT

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LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T79 221-228 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T80 247-256 Chemical denotes glutamine http://purl.obolibrary.org/obo/CHEBI_28300
T81 280-288 Chemical denotes N-glycan http://purl.obolibrary.org/obo/CHEBI_59520
T82 490-498 Chemical denotes cysteine http://purl.obolibrary.org/obo/CHEBI_15356
T83 561-568 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T84 616-623 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T85 679-683 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T86 737-744 Chemical denotes oxonium http://purl.obolibrary.org/obo/CHEBI_29412
T87 745-749 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T88 773-780 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T89 790-794 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T90 877-881 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T91 953-959 Chemical denotes fucose http://purl.obolibrary.org/obo/CHEBI_33984
T92 1003-1015 Chemical denotes glycopeptide http://purl.obolibrary.org/obo/CHEBI_24396

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T66 0-169 Sentence denotes (D) A representative Step-HCD fragmentation spectrum from mass-spectrometry analysis of a tryptic digest of S annotated manually based on search results from pGlyco 2.2.
T67 170-262 Sentence denotes This spectrum defines the N terminus of the mature protein monomer as (pyro-)glutamine 0014.
T68 263-424 Sentence denotes A representative N-glycan consistent with this annotation and our glycomics data (Figure 2) is overlaid by using the Symbol Nomenclature For Glycans (SNFG) code.
T69 425-461 Sentence denotes This complex glycan occurs at N0017.
T70 462-581 Sentence denotes Note, that as expected, the cysteine is carbamidomethylated, and the mass accuracy of the assigned peptide is 0.98 ppm.
T71 582-694 Sentence denotes On the sequence of the N-terminal peptide and in the spectrum, the assigned b (blue) and y (red) ions are shown.
T72 695-848 Sentence denotes In the spectrum, purple highlights glycan oxonium ions and green marks intact peptide fragment ions with various partial glycan sequences still attached.
T73 849-1016 Sentence denotes Note that the green-labeled ions allow for limited topology to be extracted including defining that the fucose is on the core and not the antennae of the glycopeptide.

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1615 605-623 Protein denotes N-terminal peptide https://www.uniprot.org/uniprot/Q9DB14|https://www.uniprot.org/uniprot/Q9D2P6|https://www.uniprot.org/uniprot/Q9CYP0|https://www.uniprot.org/uniprot/Q9BS38|https://www.uniprot.org/uniprot/Q8CCZ3|https://www.uniprot.org/uniprot/Q6FHD0|https://www.uniprot.org/uniprot/Q06A28|https://www.uniprot.org/uniprot/P27682|https://www.uniprot.org/uniprot/P18844|https://www.uniprot.org/uniprot/P12961|https://www.uniprot.org/uniprot/P05408|https://www.uniprot.org/uniprot/P01165|https://www.uniprot.org/uniprot/P01164|https://www.uniprot.org/uniprot/A5HAK0|https://www.uniprot.org/uniprot/A5A6J6

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T58 221-228 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T59 247-256 Body_part denotes glutamine http://purl.org/sig/ont/fma/fma82752
T60 490-498 Body_part denotes cysteine http://purl.org/sig/ont/fma/fma82751
T61 953-959 Body_part denotes fucose http://purl.org/sig/ont/fma/fma82790
T62 1003-1015 Body_part denotes glycopeptide http://purl.org/sig/ont/fma/fma82784

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T2 987-995 http://purl.obolibrary.org/obo/MAT_0000086 denotes antennae