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PMC:7441777 / 9936-12499 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T46 137-145 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T65 306-308 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T66 365-368 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T67 547-548 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T68 686-688 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T69 852-853 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T70 995-997 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T71 1109-1111 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T72 1178-1180 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T73 1406-1408 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T74 1731-1733 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T75 1745-1746 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T76 1780-1782 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T77 1826-1828 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T78 2079-2081 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T79 2185-2187 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T80 2245-2247 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T81 2259-2260 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 2397-2399 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T83 2540-2543 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T114 51-62 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T115 97-100 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T117 105-115 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T118 153-155 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T119 294-297 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T120 310-318 Chemical denotes Cyanidin http://purl.obolibrary.org/obo/CHEBI_27843
T121 346-354 Chemical denotes Daidzein http://purl.obolibrary.org/obo/CHEBI_28197
T122 418-425 Chemical denotes Wogonin http://purl.obolibrary.org/obo/CHEBI_10043
T123 436-446 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T125 459-468 Chemical denotes Phloretin http://purl.obolibrary.org/obo/CHEBI_17276
T126 479-483 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T127 515-524 Chemical denotes Myricetin http://purl.obolibrary.org/obo/CHEBI_18152
T128 559-572 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T129 605-614 Chemical denotes Quercetin http://purl.obolibrary.org/obo/CHEBI_16243
T130 626-636 Chemical denotes Pinosylvin http://purl.obolibrary.org/obo/CHEBI_36011
T131 647-655 Chemical denotes Curcumin http://purl.obolibrary.org/obo/CHEBI_3962
T132 667-679 Chemical denotes Formononetin http://purl.obolibrary.org/obo/CHEBI_18088
T133 718-732 Chemical denotes Liquiritigenin http://purl.obolibrary.org/obo/CHEBI_28777
T134 743-751 Chemical denotes Peonidin http://purl.obolibrary.org/obo/CHEBI_75033
T135 763-771 Chemical denotes Prunetin http://purl.obolibrary.org/obo/CHEBI_8600
T136 782-789 Chemical denotes Fisetin http://purl.obolibrary.org/obo/CHEBI_42567
T137 842-853 Chemical denotes Biochanin A http://purl.obolibrary.org/obo/CHEBI_17574
T138 915-925 Chemical denotes Kaempferol http://purl.obolibrary.org/obo/CHEBI_28499
T139 937-946 Chemical denotes Genistein http://purl.obolibrary.org/obo/CHEBI_27514|http://purl.obolibrary.org/obo/CHEBI_28088
T141 957-969 Chemical denotes Scutellarein http://purl.obolibrary.org/obo/CHEBI_9062
T142 1026-1042 Chemical denotes 6-Hydroxyflavone http://purl.obolibrary.org/obo/CHEBI_34472
T143 1053-1061 Chemical denotes Purpurin http://purl.obolibrary.org/obo/CHEBI_8645
T144 1073-1078 Chemical denotes Equol http://purl.obolibrary.org/obo/CHEBI_34741
T145 1089-1101 Chemical denotes Isorhamnetin http://purl.obolibrary.org/obo/CHEBI_6052
T146 1113-1124 Chemical denotes Piceatannol http://purl.obolibrary.org/obo/CHEBI_28814
T147 1135-1143 Chemical denotes Tricetin http://purl.obolibrary.org/obo/CHEBI_507499
T148 1182-1192 Chemical denotes Gossypetin http://purl.obolibrary.org/obo/CHEBI_16400
T149 1204-1215 Chemical denotes Resveratrol http://purl.obolibrary.org/obo/CHEBI_27881|http://purl.obolibrary.org/obo/CHEBI_45713
T151 1226-1237 Chemical denotes Norathyriol http://purl.obolibrary.org/obo/CHEBI_7622
T152 1269-1279 Chemical denotes Coumestrol http://purl.obolibrary.org/obo/CHEBI_3908
T153 1309-1323 Chemical denotes Isosakuranetin http://purl.obolibrary.org/obo/CHEBI_27552
T154 1343-1347 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T155 1386-1399 Chemical denotes Pterostilbene http://purl.obolibrary.org/obo/CHEBI_8630
T156 1432-1444 Chemical denotes Ferulic acid http://purl.obolibrary.org/obo/CHEBI_17620
T157 1440-1444 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T158 1476-1488 Chemical denotes Caffeic acid http://purl.obolibrary.org/obo/CHEBI_16433|http://purl.obolibrary.org/obo/CHEBI_17395
T160 1484-1488 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T161 1499-1509 Chemical denotes Pratensein http://purl.obolibrary.org/obo/CHEBI_8359
T162 1532-1536 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T163 1547-1557 Chemical denotes Hispidulin http://purl.obolibrary.org/obo/CHEBI_75902
T164 1584-1588 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T165 1599-1608 Chemical denotes Baicalein http://purl.obolibrary.org/obo/CHEBI_2979
T166 1620-1633 Chemical denotes Gentisic acid http://purl.obolibrary.org/obo/CHEBI_17189
T167 1629-1633 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T168 1644-1652 Chemical denotes Apigenin http://purl.obolibrary.org/obo/CHEBI_18388
T169 1664-1674 Chemical denotes Pyrogallol http://purl.obolibrary.org/obo/CHEBI_16164
T170 1702-1724 Chemical denotes 4-Hydroxycinnamic acid http://purl.obolibrary.org/obo/CHEBI_32374
T171 1720-1724 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T172 1758-1773 Chemical denotes Resacetophenone http://purl.obolibrary.org/obo/CHEBI_18414
T173 1784-1792 Chemical denotes Acacetin http://purl.obolibrary.org/obo/CHEBI_15335
T174 1815-1819 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T175 1830-1842 Chemical denotes Pelargonidin http://purl.obolibrary.org/obo/CHEBI_28510
T176 1863-1867 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T177 1878-1885 Chemical denotes Irilone http://purl.obolibrary.org/obo/CHEBI_5970
T178 1914-1918 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T179 1929-1939 Chemical denotes Naringenin http://purl.obolibrary.org/obo/CHEBI_17846
T180 1951-1962 Chemical denotes Gallic acid http://purl.obolibrary.org/obo/CHEBI_30778
T181 1958-1962 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T182 1996-2017 Chemical denotes 3-Hydroxybenzoic acid http://purl.obolibrary.org/obo/CHEBI_30764
T183 2013-2017 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T184 2028-2039 Chemical denotes Kaempferide http://purl.obolibrary.org/obo/CHEBI_6099
T185 2051-2072 Chemical denotes 4-Hydroxybenzoic acid http://purl.obolibrary.org/obo/CHEBI_30763
T186 2068-2072 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T187 2083-2091 Chemical denotes Malvidin http://purl.obolibrary.org/obo/CHEBI_6674
T188 2103-2111 Chemical denotes Vanillin http://purl.obolibrary.org/obo/CHEBI_18346
T189 2122-2130 Chemical denotes Luteolin http://purl.obolibrary.org/obo/CHEBI_15864
T190 2153-2157 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T191 2168-2177 Chemical denotes Dalbergin http://purl.obolibrary.org/obo/CHEBI_4308
T192 2189-2202 Chemical denotes Vanillic acid http://purl.obolibrary.org/obo/CHEBI_30816
T193 2198-2202 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T194 2213-2219 Chemical denotes Butein http://purl.obolibrary.org/obo/CHEBI_3237
T195 2231-2238 Chemical denotes Paeonol http://purl.obolibrary.org/obo/CHEBI_69581
T196 2249-2260 Chemical denotes Biochanin A http://purl.obolibrary.org/obo/CHEBI_17574
T197 2277-2290 Chemical denotes Cinnamic acid http://purl.obolibrary.org/obo/CHEBI_27386
T198 2286-2290 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T199 2301-2307 Chemical denotes Fustin http://purl.obolibrary.org/obo/CHEBI_5202
T200 2319-2338 Chemical denotes Protocatechuic acid http://purl.obolibrary.org/obo/CHEBI_36062
T201 2334-2338 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T202 2377-2390 Chemical denotes 4-Ethylphenol http://purl.obolibrary.org/obo/CHEBI_49584
T203 2424-2432 Chemical denotes Catechol http://purl.obolibrary.org/obo/CHEBI_18135
T204 2467-2474 Chemical denotes Tyrosol http://purl.obolibrary.org/obo/CHEBI_1879
T205 2509-2512 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T207 2524-2532 Chemical denotes Galangin http://purl.obolibrary.org/obo/CHEBI_5262

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
322 329-333 Gene denotes TF2b Gene:2959
323 241-242 Gene denotes S Gene:43740568
324 191-192 Gene denotes S Gene:43740568
325 2546-2556 Chemical denotes Remdesivir MESH:C000606551
331 125-129 Gene denotes RdRp Gene:43740578
332 137-147 Species denotes SARS-CoV-2 Tax:2697049
333 51-62 Chemical denotes polyphenols MESH:D059808
334 97-100 Chemical denotes GTP MESH:D006160
335 105-115 Chemical denotes remdesivir MESH:C000606551

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 365-368 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T77 0-8 Sentence denotes Table 1.
T78 10-156 Sentence denotes Binding energy (kcal/mol) of the natural polyphenols along with the control compounds (GTP and remdesivir) against RdRp of the SARS-CoV-2 (PDB ID:
T79 157-190 Sentence denotes 6M71) by molecular docking study.
T80 191-193 Sentence denotes S.
T81 194-197 Sentence denotes No.
T82 199-243 Sentence denotes Compound Name Binding energy (kcal/mol) S.
T83 244-247 Sentence denotes No.
T84 249-289 Sentence denotes Compound Name Binding energy (kcal/mol)
T85 290-324 Sentence denotes 1 TF3 −9.9 52 Cyanidin −6.3
T86 325-360 Sentence denotes 2 TF2b −9.6 53 Daidzein −6.3
T87 361-396 Sentence denotes 3 TF1 −9.6 54 Glycitein −6.3
T88 397-431 Sentence denotes 4 TF2a −9.3 55 Wogonin −6.3
T89 432-474 Sentence denotes 5 Hesperidin −8.8 56 Phloretin −6.3
T90 475-510 Sentence denotes 6 EGCG −7.3 57 Catechin −6.2
T91 511-554 Sentence denotes 7 Myricetin −7.2 58 Urolithin B −6.2
T92 555-601 Sentence denotes 8 Quercetagetin −7.0 59 Angolensin −6.2
T93 602-642 Sentence denotes 9 Quercetin −6.9 60 Pinosylvin −6.2
T94 643-685 Sentence denotes 10 Curcumin −6.9 61 Formononetin −6.2
T95 686-738 Sentence denotes 11 Dihydrorobinetin −6.8 62 Liquiritigenin −6.2
T96 739-777 Sentence denotes 12 Peonidin −6.8 63 Prunetin −6.2
T97 778-816 Sentence denotes 13 Fisetin −6.8 64 Alpinetin −6.2
T98 817-859 Sentence denotes 14 Robinetin −6.7 65 Biochanin A −6.2
T99 860-910 Sentence denotes 15 5-Deoxygalangin −6.7 66 Rhapontigenin −6.1
T100 911-952 Sentence denotes 16 Kaempferol −6.7 67 Genistein −6.1
T101 953-994 Sentence denotes 17 Scutellarein −6.7 68 Chrysin −6.1
T102 995-1048 Sentence denotes 18 (-)-Epicatechin −6.7 69 6-Hydroxyflavone −6.1
T103 1049-1084 Sentence denotes 19 Purpurin −6.7 70 Equol −6.1
T104 1085-1130 Sentence denotes 20 Isorhamnetin −6.7 71 Piceatannol −6.1
T105 1131-1177 Sentence denotes 21 Tricetin −6.6 72 Isorhapontigenin −6.0
T106 1178-1221 Sentence denotes 22 Gossypetin −6.6 73 Resveratrol −5.8
T107 1222-1264 Sentence denotes 23 Norathyriol −6.6 74 Danshensu −5.7
T108 1265-1304 Sentence denotes 24 Coumestrol −6.6 75 Eugenin −5.6
T109 1305-1353 Sentence denotes 25 Isosakuranetin −6.6 76 Sinapic acid −5.5
T110 1354-1405 Sentence denotes 26 Pectolinarigenin −6.6 77 Pterostilbene −5.5
T111 1406-1450 Sentence denotes 27 Tangeritin −6.6 78 Ferulic acid −5.4
T112 1451-1494 Sentence denotes 28 Nobiletin −6.6 79 Caffeic acid −5.4
T113 1495-1542 Sentence denotes 29 Pratensein −6.6 80 Isoferulic acid −5.4
T114 1543-1594 Sentence denotes 30 Hispidulin −6.6 81 Dihydrocaffeic acid −5.4
T115 1595-1639 Sentence denotes 31 Baicalein −6.5 82 Gentisic acid −5.3
T116 1640-1680 Sentence denotes 32 Apigenin −6.5 83 Pyrogallol −5.3
T117 1681-1730 Sentence denotes 33 Morin −6.5 84 4-Hydroxycinnamic acid −5.2
T118 1731-1779 Sentence denotes 34 Urolithin A −6.5 85 Resacetophenone −5.2
T119 1780-1825 Sentence denotes 35 Acacetin −6.5 86 Salicyclic acid −5.1
T120 1826-1873 Sentence denotes 36 Pelargonidin −6.5 87 Syringic acid −5.1
T121 1874-1924 Sentence denotes 37 Irilone −6.5 88 2-Hydroxybenzoic acid −5.1
T122 1925-1968 Sentence denotes 38 Naringenin −6.5 89 Gallic acid −5.0
T123 1969-2023 Sentence denotes 39 Pinocembrin −6.5 90 3-Hydroxybenzoic acid −5.0
T124 2024-2078 Sentence denotes 40 Kaempferide −6.5 91 4-Hydroxybenzoic acid −5.0
T125 2079-2117 Sentence denotes 41 Malvidin −6.5 92 Vanillin −5.0
T126 2118-2163 Sentence denotes 42 Luteolin −6.4 93 p-Coumeric acid −4.9
T127 2164-2208 Sentence denotes 43 Dalbergin −6.4 94 Vanillic acid −4.8
T128 2209-2244 Sentence denotes 44 Butein −6.4 95 Paeonol −4.8
T129 2245-2296 Sentence denotes 45 Biochanin A (1-) −6.4 96 Cinnamic acid −4.7
T130 2297-2344 Sentence denotes 46 Fustin −6.4 97 Protocatechuic acid −4.6
T131 2345-2396 Sentence denotes 47 5-Hydroxyflavone −6.4 98 4-Ethylphenol −4.5
T132 2397-2438 Sentence denotes 48 Pinostrobin −6.4 99 Catechol −4.5
T133 2439-2480 Sentence denotes 49 Pinobanksin −6.4 100 Tyrosol −4.5
T134 2481-2519 Sentence denotes 50 Datiscetin −6.3 101 GTP −7.9
T135 2520-2563 Sentence denotes 51 Galangin −6.3 102 Remdesivir −7.7