PMC:7441777 / 8837-9535
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T26 | 8-15 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T27 | 127-134 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T43 | 54-62 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 539-547 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 682-690 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T103 | 8-15 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T104 | 75-77 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T105 | 127-134 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T106 | 240-248 | Chemical | denotes | hydrogen | http://purl.obolibrary.org/obo/CHEBI_49637 |
| T107 | 249-254 | Chemical | denotes | atoms | http://purl.obolibrary.org/obo/CHEBI_33250 |
| T108 | 520-530 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
| T109 | 665-674 | Chemical | denotes | inhibitor | http://purl.obolibrary.org/obo/CHEBI_35222 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 302 | 65-69 | Gene | denotes | RdRp | Gene:43740578 |
| 303 | 550-554 | Gene | denotes | RdRp | Gene:43740578 |
| 304 | 309-313 | Gene | denotes | v4.2 | Gene:28781 |
| 305 | 54-64 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 306 | 539-549 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 307 | 240-248 | Chemical | denotes | hydrogen | MESH:D006859 |
| 310 | 693-697 | Gene | denotes | RdRp | Gene:43740578 |
| 311 | 682-692 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T64 | 0-6 | Sentence | denotes | 2.1.1. |
| T65 | 8-28 | Sentence | denotes | Protein preparations |
| T66 | 29-78 | Sentence | denotes | The crystal structure of SARS-CoV-2 RdRp (PDB ID: |
| T67 | 79-181 | Sentence | denotes | 6M71) (Yan et al., 2020) was retrieved from the protein databank (www.rcsb.org) (Berman et al., 2000). |
| T68 | 182-344 | Sentence | denotes | The crystal structure was prepared individually by adding hydrogen atoms and computing the Gasteiger charge using the AutoDock v4.2 program (Morris et al., 2009). |
| T69 | 345-432 | Sentence | denotes | Subsequently, the file was saved as .pdbqt format in preparation for molecular docking. |
| T70 | 433-576 | Sentence | denotes | Schematic representation of the work-flow for selecting potential natural polyphenolic inhibitors for the SARS-CoV-2 RdRp is shown in Figure 2. |
| T71 | 577-586 | Sentence | denotes | Figure 2. |
| T72 | 588-698 | Sentence | denotes | Flow chart of the methodology for shortlisting the best natural polyphenolic inhibitor of the SARS-CoV-2 RdRp. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32720577-19399780-56195101 | 338-342 | 19399780 | denotes | 2009 |