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PMC:7441777 / 33634-35489 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 130-138 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T203 10-13 http://purl.obolibrary.org/obo/CLO_0008190 denotes Per

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T462 84-94 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T463 96-100 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T464 102-105 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T465 506-510 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T466 788-791 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
821 211-215 Gene denotes RdRp Gene:43740578
822 501-505 Gene denotes RdRp Gene:43740578
823 783-787 Gene denotes RdRp Gene:43740578
824 1179-1183 Gene denotes RdRp Gene:43740578
825 1184-1188 Gene denotes TF2b Gene:2959
826 1572-1576 Gene denotes RdRp Gene:43740578
827 216-226 Chemical denotes Remdesivir MESH:C000606551
833 116-120 Gene denotes TF2b Gene:2959
834 141-145 Gene denotes RdRp Gene:43740578
835 130-140 Species denotes SARS-CoV-2 Tax:2697049
836 84-94 Chemical denotes remdesivir MESH:C000606551
837 96-100 Chemical denotes EGCG MESH:C045651

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T314 0-8 Sentence denotes Table 5.
T315 10-146 Sentence denotes Per-residue based decomposition of binding free energy for the complex of remdesivir, EGCG, TF3, TF2a and TF2b with the SARS-CoV-2 RdRp.
T316 147-210 Sentence denotes Residue TvdW Telec Tpol Tnp Tside_chain Tbackbone Ttotal
T317 211-226 Sentence denotes RdRp/Remdesivir
T318 227-282 Sentence denotes Asp761 1.05 −21.73 18.81 −0.14 −1.82 −0.19 −2.01
T319 283-336 Sentence denotes Lys798 −2.74 −4.28 5.74 −0.47 −1.76 0.01 −1.75
T320 337-391 Sentence denotes Pro620 −1.42 −1.15 1.16 −0.18 −1.26 −0.33 −1.59
T321 392-446 Sentence denotes Asp760 −0.57 −4.27 4.24 −0.12 −0.20 −0.52 −0.72
T322 447-500 Sentence denotes Arg553 −2.07 −3.71 5.61 −0.51 −0.76 0.08 −0.68
T323 501-510 Sentence denotes RdRp/EGCG
T324 511-564 Sentence denotes Asp452 1.65 −16.48 9.85 −0.08 −5.15 0.09 −5.06
T325 565-618 Sentence denotes Arg553 −3.83 −4.84 6.59 −0.59 −2.68 0.01 −2.67
T326 619-673 Sentence denotes Pro620 −1.64 −0.41 0.51 −0.33 −1.62 −0.25 −1.87
T327 674-727 Sentence denotes Asp618 0.49 −8.14 6.66 −0.09 −1.13 −0.05 −1.08
T328 728-782 Sentence denotes Lys621 −2.26 −5.12 6.92 −0.50 −0.87 −0.09 −0.96
T329 783-791 Sentence denotes RdRp/TF3
T330 792-847 Sentence denotes Asp761 2.52 −30.13 22.11 −0.25 −5.54 −0.21 −5.75
T331 848-904 Sentence denotes Arg836 −0.83 −14.95 12.29 −0.37 −3.85 −0.01 −3.86
T332 905-959 Sentence denotes Arg555 −5.80 −4.00 7.29 −0.70 −2.98 −0.23 −3.21
T333 960-1014 Sentence denotes Thr556 −0.20 −3.96 2.44 −0.13 −0.21 −1.64 −1.85
T334 1015-1069 Sentence denotes Ile548 −1.03 −0.08 0.12 −0.13 −0.65 −0.47 −1.12
T335 1070-1123 Sentence denotes Ser814 −1.67 0.09 0.78 −0.08 −0.48 −0.40 −0.88
T336 1124-1178 Sentence denotes Val557 −0.65 −0.16 0.17 −0.24 −0.65 −0.23 −0.88
T337 1179-1188 Sentence denotes RdRp/TF2b
T338 1189-1243 Sentence denotes His816 −3.00 −0.81 1.69 −0.32 −1.63 −0.81 −2.44
T339 1244-1298 Sentence denotes Asp833 −1.29 −0.23 0.46 −0.18 −0.21 −1.03 −1.24
T340 1299-1353 Sentence denotes Tyr877 −0.92 −2.06 2.06 −0.27 −0.43 −0.76 −1.19
T341 1354-1406 Sentence denotes Glu811 0.22 −9.24 8.11 −0.13 −2.07 1.03 −1.04
T342 1407-1461 Sentence denotes His810 −1.88 −0.41 1.66 −0.34 −0.10 −0.85 −0.95
T343 1462-1516 Sentence denotes Tyr831 −1.51 −0.36 1.19 −0.13 −0.21 −0.60 −0.81
T344 1517-1571 Sentence denotes Asn815 −0.60 −0.27 0.09 −0.01 −0.25 −0.54 −0.79
T345 1572-1581 Sentence denotes RdRp/TF2a
T346 1582-1637 Sentence denotes Asp618 2.63 −20.71 13.40 −0.17 −4.84 −0.01 −4.85
T347 1638-1692 Sentence denotes Arg553 −3.80 −6.52 7.55 −0.69 −2.68 −0.78 −3.46
T348 1693-1747 Sentence denotes Lys551 −2.23 −0.80 2.23 −0.45 −0.84 −0.41 −1.25
T349 1748-1802 Sentence denotes Arg555 −1.33 −0.62 1.05 −0.27 −1.12 −0.05 −1.17