PMC:7441777 / 28874-29742
Annnotations
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T187 | 158-159 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T188 | 444-446 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T189 | 444-446 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T190 | 785-786 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T404 | 76-78 | Chemical | denotes | MM | http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707 |
| T406 | 101-112 | Chemical | denotes | polyphenols | http://purl.obolibrary.org/obo/CHEBI_26195 |
| T407 | 121-125 | Chemical | denotes | EGCG | http://purl.obolibrary.org/obo/CHEBI_4806 |
| T408 | 127-130 | Chemical | denotes | TF3 | http://purl.obolibrary.org/obo/CHEBI_136608 |
| T409 | 198-208 | Chemical | denotes | remdesivir | http://purl.obolibrary.org/obo/CHEBI_145994 |
| T410 | 283-287 | Chemical | denotes | EGCG | http://purl.obolibrary.org/obo/CHEBI_4806 |
| T411 | 289-292 | Chemical | denotes | TF3 | http://purl.obolibrary.org/obo/CHEBI_136608 |
| T412 | 353-364 | Chemical | denotes | polyphenols | http://purl.obolibrary.org/obo/CHEBI_26195 |
| T413 | 414-424 | Chemical | denotes | remdesivir | http://purl.obolibrary.org/obo/CHEBI_145994 |
| T414 | 444-446 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T415 | 608-614 | Chemical | denotes | ligand | http://purl.obolibrary.org/obo/CHEBI_52214 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 692-701 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 707 | 132-136 | Gene | denotes | TF2b | Gene:2959 |
| 708 | 294-298 | Gene | denotes | TF2b | Gene:2959 |
| 709 | 79-83 | Chemical | denotes | PBSA | MESH:C437084 |
| 710 | 101-112 | Chemical | denotes | polyphenols | MESH:D059808 |
| 711 | 121-125 | Chemical | denotes | EGCG | MESH:C045651 |
| 712 | 198-208 | Chemical | denotes | remdesivir | MESH:C000606551 |
| 713 | 283-287 | Chemical | denotes | EGCG | MESH:C045651 |
| 714 | 353-364 | Chemical | denotes | polyphenols | MESH:D059808 |
| 715 | 414-424 | Chemical | denotes | remdesivir | MESH:C000606551 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T274 | 0-233 | Sentence | denotes | We predicted the binding free energy of all nine complexes by utilizing the MM-PBSA scheme, and four polyphenols, namely EGCG, TF3, TF2b, and TF2a, displayed a higher estimated affinity compared to remdesivir as depicted in Figure 4. |
| T275 | 234-333 | Sentence | denotes | Various components of the binding free energy of EGCG, TF3, TF2b, and TF2a are reported in Table 4. |
| T276 | 334-476 | Sentence | denotes | The remaining four polyphenols which showed lower estimated affinity compare to remdesivir are shown in Table S2 in Supplementary Information. |
| T277 | 477-702 | Sentence | denotes | It can be noted from Figure 4 that the intermolecular van der Waals (ΔEvdW) and electrostatic (ΔEelec) terms are favorable for the ligand binding, whereas the desolvation of polar groups (ΔGpol) opposes the complex formation. |
| T278 | 703-784 | Sentence | denotes | Non-polar solvation free energy (ΔGnp) is favorable to the binding for all cases. |
| T279 | 785-868 | Sentence | denotes | A similar trend was observed in our earlier study (Sk, Roy, Jonniya, et al., 2020). |