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PMC:7441777 / 20635-21816 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 17-27 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T36 204-215 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 94-102 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T117 434-437 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T294 17-27 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T295 17-22 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T296 23-27 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T297 70-81 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T298 204-215 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T299 204-209 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T300 210-215 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T301 219-222 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T302 625-635 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T304 727-731 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T305 798-807 Chemical denotes Myricetin http://purl.obolibrary.org/obo/CHEBI_18152
T306 881-894 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T307 1068-1071 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
472 338-342 Gene denotes TF2b Gene:2959
473 111-112 Gene denotes S Gene:43740568
474 955-965 Chemical denotes Remdesivir MESH:C000606551
475 246-250 CellLine denotes S549 CVCL:0023
476 420-424 CellLine denotes S549 CVCL:0023
477 587-591 CellLine denotes S549 CVCL:0023
481 105-109 Gene denotes RdRp Gene:43740578
482 94-104 Species denotes SARS-CoV-2 Tax:2697049
483 70-81 Chemical denotes polyphenols MESH:D059808

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T6 434-437 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T205 0-8 Sentence denotes Table 2.
T206 10-110 Sentence denotes Ligand-amino acid interactions of top eight scoring natural polyphenols against the SARS-CoV-2 RdRp.
T207 111-113 Sentence denotes S.
T208 114-117 Sentence denotes No.
T209 119-215 Sentence denotes Compound name Binding energy (kcal/mol) No. of non-covalent interactions Involved amino acids
T210 216-334 Sentence denotes 1 TF3 −9.9 17 W617, K551, S549, D623, R836, S814, E811, F812, C813, D761, D618, S759, Y619, C622, R553, K621, D760
T211 335-430 Sentence denotes 2 TF2b −9.6 13 K551, Y619, D760, K798, W617, W800, D761, F812, C813, E811, D618, S549, A550
T212 431-519 Sentence denotes 3 TF1 −9.6 12 W617, D761, D760, Y619, R553, K621, P620, F793, D164, S795, K798, D618
T213 520-621 Sentence denotes 4 TF2a −9.3 14 C813, F812, D761, D760, D618, K798, K551, A550, S549, K621, Y619, W800, W617, E811
T214 622-723 Sentence denotes 5 Hesperidin −8.8 13 Y619, D618, K798, S795, M794, P793, D164, V166, P620, K621, D623, R555, Y455
T215 724-794 Sentence denotes 6 EGCG −7.3 9 D623, Y619, K621, S795, C622, D618, M794, P620, K798
T216 795-877 Sentence denotes 7 Myricetin −7.2 10 W617, W800, D760, E811, K798, D618, Y619, C622, D761, F812
T217 878-951 Sentence denotes 8 Quercetagetin −7.0 8 R553, K545, K621, D623, C622, D760, P620, Y619
T218 952-1063 Sentence denotes 9 Remdesivir (Control) −7.7 13 R553, K621, C622, D760, E811, W800, K798, P620, Y455, R624, Y619, D618, D761