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PMC:7441777 / 2054-3567 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 1002-1006 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T8 1017-1023 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 1090-1093 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 1109-1115 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T11 1245-1253 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 1281-1289 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T13 1442-1450 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1002-1006 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T2 1017-1023 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T11 36-44 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 248-256 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 513-521 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 562-609 Disease denotes Severe Acute Respiratory Syndrome Coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T15 611-619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 730-763 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 777-785 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 928-936 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 939-948 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 996-1006 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T21 1012-1023 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T22 1043-1051 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 1293-1301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 46-49 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 57-58 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 325-327 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T12 383-384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 624-625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 664-671 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T15 1002-1006 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T16 1057-1058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1094-1099 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 1131-1133 http://purl.obolibrary.org/obo/CLO_0007074 denotes kB
T19 1131-1133 http://purl.obolibrary.org/obo/CLO_0051988 denotes kB
T20 1337-1345 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T36 493-497 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T37 1245-1253 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T38 1281-1289 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 1417-1424 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
109 1319-1320 Gene denotes S Gene:43740568
110 1333-1334 Gene denotes E Gene:43740570
111 1337-1345 Gene denotes membrane Gene:43740571
112 1347-1348 Gene denotes M Gene:43740571
113 1355-1367 Gene denotes nucleocapsid Gene:43740575
114 1369-1370 Gene denotes N Gene:43740575
115 1323-1331 Gene denotes envelope Gene:43740570
116 336-342 Species denotes people Tax:9606
117 562-609 Species denotes Severe Acute Respiratory Syndrome Coronavirus 2 Tax:2697049
118 611-621 Species denotes SARS-CoV-2 Tax:2697049
119 640-653 Species denotes Coronaviridae Tax:11118
120 706-723 Species denotes Betacoronaviruses Tax:694002
121 730-775 Species denotes Severe Acute Respiratory Syndrome Coronavirus Tax:694009
122 777-785 Species denotes SARS-CoV Tax:694009
123 791-846 Species denotes Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Tax:1335626
124 1043-1053 Species denotes SARS-CoV-2 Tax:2697049
125 1293-1303 Species denotes SARS-CoV-2 Tax:2697049
126 15-34 Disease denotes Coronavirus disease MESH:D018352
127 36-44 Disease denotes COVID-19 MESH:C000657245
128 248-256 Disease denotes COVID-19 MESH:C000657245
129 513-521 Disease denotes COVID-19 MESH:C000657245
130 928-948 Disease denotes SARS-CoV-2 infection MESH:C000657245
131 957-962 Disease denotes fever MESH:D005334
132 964-973 Disease denotes dry cough MESH:D003371
133 975-994 Disease denotes shortness of breath MESH:D004417
134 1012-1023 Disease denotes sore throat MESH:D010608
135 1181-1185 Disease denotes ORFs MESH:D004474

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-95 Sentence denotes An outbreak of Coronavirus disease (COVID-19) has caused a pandemic situation across the globe.
T26 96-293 Sentence denotes Although the outburst was first observed at Wuhan city in China, at present more than 200 countries and territories around the world have witnessed the COVID-19 fatalities affecting all age groups.
T27 294-445 Sentence denotes As of July 03, 2020, more than 11 million people have been affected by the disease, with a fatality of 5,25,410 across the globe as per the WHO report.
T28 446-532 Sentence denotes Unfortunately, there is no clinically approved drug or vaccine for COVID-19 as of now.
T29 533-911 Sentence denotes The disease is caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), a member of the Coronaviridae family of viruses and it belongs to the same family Betacoronaviruses, like Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome Coronavirus (MERS-CoV) (Chan et al., 2015; Elfiky & Azzam, 2020; Ibrahim et al., 2020).
T30 912-1042 Sentence denotes The symptoms of SARS-CoV-2 infection include fever, dry cough, shortness of breath, runny nose, and sore throat (Wu et al., 2020).
T31 1043-1254 Sentence denotes SARS-CoV-2 is a positive-sense single-stranded RNA virus, and its genome is around 29.7 kB long with twelve putative open reading frames (ORFs) that encode different viral structural and non-structural proteins.
T32 1255-1513 Sentence denotes There are four structural proteins in SARS-CoV-2, namely spike (S), envelope (E), membrane (M), and nucleocapsid (N), and all of them can potentially serve as an antigen for neutralizing antibody preparation as potential therapeutics (Boopathi et al., 2020).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 957-962 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 964-973 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T3 975-994 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T4 996-1006 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T5 1012-1023 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050

2_test

Id Subject Object Predicate Lexical cue
32720577-25810418-56195089 861-865 25810418 denotes 2015
32720577-32169481-56195090 905-909 32169481 denotes 2020