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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 86-89 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 100-103 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T3 610-613 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 624-627 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 667-670 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 829-832 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 3056-3060 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T8 3071-3077 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 3144-3147 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 3163-3169 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T11 3299-3307 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 3335-3343 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T13 3496-3504 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T14 3616-3619 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 3630-3633 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T16 3762-3765 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T17 3766-3772 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T18 4432-4435 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T19 4724-4727 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T20 5187-5197 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T21 5300-5303 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T22 5314-5317 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T23 6015-6018 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T24 6781-6784 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T25 8707-8717 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T26 8845-8852 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T27 8964-8971 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T28 13265-13272 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T29 13326-13333 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 13545-13552 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T31 18046-18053 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T32 18166-18173 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T33 18844-18852 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T34 19928-19938 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T35 20652-20662 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T36 20839-20850 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T37 22800-22813 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T38 23927-23935 Body_part denotes backbone http://purl.org/sig/ont/fma/fma13478
T39 24684-24695 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T40 24715-24721 Body_part denotes radius http://purl.org/sig/ont/fma/fma23463
T41 24959-24967 Body_part denotes backbone http://purl.org/sig/ont/fma/fma13478
T42 25133-25141 Body_part denotes backbone http://purl.org/sig/ont/fma/fma13478
T43 25148-25154 Body_part denotes radius http://purl.org/sig/ont/fma/fma23463
T44 25343-25345 Body_part denotes Å2 http://purl.org/sig/ont/fma/fma66595
T45 27672-27678 Body_part denotes radius http://purl.org/sig/ont/fma/fma23463
T46 27724-27731 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T47 28520-28527 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T48 28612-28614 Body_part denotes Å2 http://purl.org/sig/ont/fma/fma66595
T49 28677-28681 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T50 28737-28739 Body_part denotes Å2 http://purl.org/sig/ont/fma/fma66595
T51 28817-28824 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T52 33391-33399 Body_part denotes backbone http://purl.org/sig/ont/fma/fma13478
T53 35865-35876 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T54 37005-37009 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T55 37588-37592 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T56 41196-41203 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T57 41891-41896 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T58 41914-41918 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 41955-41965 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T60 42219-42228 Body_part denotes intestine http://purl.org/sig/ont/fma/fma7199
T61 42342-42354 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T62 42358-42370 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T63 42401-42408 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T64 42451-42463 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T65 42501-42513 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T66 42560-42572 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T67 42679-42691 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T68 42808-42813 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T69 42843-42849 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T70 42873-42879 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T71 42880-42888 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T72 42900-42908 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T73 43087-43093 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T74 43139-43154 Body_part denotes plasma membrane http://purl.org/sig/ont/fma/fma63841
T75 43390-43412 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T76 43417-43422 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T77 43423-43428 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T78 43501-43506 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T79 43535-43557 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T80 43671-43685 Body_part denotes nervous system http://purl.org/sig/ont/fma/fma7157
T81 43911-43915 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T82 44050-44065 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T83 44070-44075 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T84 44142-44147 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T85 44152-44158 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T86 44450-44454 Body_part denotes bile http://purl.org/sig/ont/fma/fma62971
T87 44475-44480 Body_part denotes sweat http://purl.org/sig/ont/fma/fma12275
T88 44509-44515 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T89 44539-44543 Body_part denotes bile http://purl.org/sig/ont/fma/fma62971
T90 44563-44568 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T91 45106-45110 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T92 45673-45677 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T93 46147-46151 Body_part denotes Skin http://purl.org/sig/ont/fma/fma7163
T94 46539-46543 Body_part denotes Skin http://purl.org/sig/ont/fma/fma7163
T95 46932-46936 Body_part denotes Skin http://purl.org/sig/ont/fma/fma7163
T96 47325-47329 Body_part denotes Skin http://purl.org/sig/ont/fma/fma7163
T97 47724-47728 Body_part denotes Skin http://purl.org/sig/ont/fma/fma7163
T98 48111-48119 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T99 48210-48218 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T100 48370-48378 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T101 48454-48461 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 48544-48552 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T103 48757-48760 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T104 48954-48962 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T105 49824-49827 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3056-3060 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T2 3071-3077 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T3 22800-22813 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T4 28677-28681 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T5 37005-37009 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T6 37588-37592 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T7 41891-41896 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T8 42219-42228 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T9 43390-43412 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T10 43398-43412 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T11 43417-43436 Body_part denotes blood-brain barrier http://purl.obolibrary.org/obo/UBERON_0000120
T12 43417-43422 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T13 43423-43428 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T14 43501-43506 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T15 43535-43557 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T16 43543-43557 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T17 43671-43685 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T18 43911-43915 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T19 44050-44065 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T20 44056-44065 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T21 44070-44075 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T22 44142-44147 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T23 44450-44454 Body_part denotes bile http://purl.obolibrary.org/obo/UBERON_0001970
T24 44475-44480 Body_part denotes sweat http://purl.obolibrary.org/obo/UBERON_0001089
T25 44539-44543 Body_part denotes bile http://purl.obolibrary.org/obo/UBERON_0001970
T26 44563-44568 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T27 45673-45677 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T28 46147-46151 Body_part denotes Skin http://purl.obolibrary.org/obo/UBERON_0000014
T29 46539-46543 Body_part denotes Skin http://purl.obolibrary.org/obo/UBERON_0000014
T30 46932-46936 Body_part denotes Skin http://purl.obolibrary.org/obo/UBERON_0000014
T31 47325-47329 Body_part denotes Skin http://purl.obolibrary.org/obo/UBERON_0000014
T32 47724-47728 Body_part denotes Skin http://purl.obolibrary.org/obo/UBERON_0000014

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 71-79 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 282-290 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 306-353 Disease denotes Severe Acute Respiratory Syndrome Coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 355-363 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 473-481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 600-608 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 656-664 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 1039-1047 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 1091-1099 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1991-1999 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 2090-2098 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 2302-2310 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2567-2575 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2616-2663 Disease denotes Severe Acute Respiratory Syndrome Coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2665-2673 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 2784-2817 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 2831-2839 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 2982-2990 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 2993-3002 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 3050-3060 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T21 3066-3077 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T22 3097-3105 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 3347-3355 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 3602-3610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 3868-3876 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 3924-3932 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 4339-4347 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 4614-4622 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 4625-4634 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 4755-4766 Disease denotes hepatitis C http://purl.obolibrary.org/obo/MONDO_0005231
T31 4755-4764 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T32 5637-5653 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T33 6038-6043 Disease denotes polio http://purl.obolibrary.org/obo/MONDO_0017373
T34 6316-6319 Disease denotes NS5 http://purl.obolibrary.org/obo/MONDO_0012690
T35 6560-6569 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T36 6763-6772 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T37 7056-7064 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 7549-7557 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 7639-7647 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 7908-7916 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 8054-8062 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 8357-8365 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 8891-8899 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 9376-9384 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 9519-9527 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 10073-10081 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 12667-12675 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 12987-12995 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 14663-14666 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T50 15311-15314 Disease denotes PME http://purl.obolibrary.org/obo/MONDO_0020074
T51 16975-16983 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 19487-19495 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 19578-19586 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 19698-19706 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 19873-19881 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 20074-20082 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 20223-20231 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 20729-20737 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 22022-22030 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 22077-22085 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T61 22214-22222 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 22657-22666 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T63 22677-22686 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T64 22855-22864 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T65 23124-23128 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 23202-23213 Disease denotes hepatitis C http://purl.obolibrary.org/obo/MONDO_0005231
T67 23202-23211 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T68 23417-23425 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 23428-23437 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 23750-23758 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 33764-33772 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 41891-41911 Disease denotes colon adenocarcinoma http://purl.obolibrary.org/obo/MONDO_0002271
T73 41897-41911 Disease denotes adenocarcinoma http://purl.obolibrary.org/obo/MONDO_0004970
T74 48780-48788 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 49062-49065 Disease denotes pie http://purl.obolibrary.org/obo/MONDO_0000923
T76 49501-49504 Disease denotes pie http://purl.obolibrary.org/obo/MONDO_0000923
T77 49600-49608 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 49611-49620 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 49792-49800 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 50356-50364 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 50787-50795 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 51065-51073 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 51292-51300 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 51413-51421 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 51424-51433 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 373-374 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 833-840 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T3 919-920 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1117-1118 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1328-1331 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T6 1491-1497 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T7 1521-1522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1774-1775 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 2100-2103 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 2111-2112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2379-2381 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T12 2437-2438 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2678-2679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2718-2725 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T15 3056-3060 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T16 3111-3112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 3148-3153 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 3185-3187 http://purl.obolibrary.org/obo/CLO_0007074 denotes kB
T19 3185-3187 http://purl.obolibrary.org/obo/CLO_0051988 denotes kB
T20 3391-3399 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T21 3673-3674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3725-3730 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 3966-3971 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 4128-4129 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4192-4197 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T26 4537-4538 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 4560-4561 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 4660-4663 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T29 4728-4735 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T30 4767-4772 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 4779-4784 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 4853-4859 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T33 4966-4967 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5066-5067 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T35 5139-5140 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T36 5161-5162 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 5243-5247 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T38 5514-5517 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T39 5529-5537 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T40 5541-5546 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T41 5970-5971 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 6019-6026 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T43 6044-6049 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T44 6072-6077 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T45 6112-6117 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 6297-6305 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T47 6418-6426 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T48 6544-6552 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T49 6570-6575 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T50 6645-6646 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 6699-6700 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 6751-6759 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T53 6773-6774 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T54 6775-6780 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T55 7374-7375 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 7499-7500 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 7842-7843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 8151-8154 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T59 8330-8336 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T60 8373-8374 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 8441-8442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 8511-8512 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 8691-8692 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 9648-9650 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T65 10242-10244 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T66 10301-10304 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T67 10483-10484 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T68 10622-10624 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T69 10788-10789 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T70 10931-10933 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T71 11045-11047 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T72 11114-11116 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T73 11342-11344 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T74 11667-11669 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T75 11681-11682 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T76 11716-11718 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T77 11762-11764 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T78 12015-12017 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T79 12121-12123 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T80 12181-12183 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T81 12195-12196 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 12333-12335 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T83 12476-12479 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T84 12786-12787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 12917-12918 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 12932-12933 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T87 12939-12940 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T88 12946-12947 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T89 12962-12965 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T90 12977-12978 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T91 13358-13359 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 13927-13929 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T93 14084-14085 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 14221-14225 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T95 14251-14253 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T96 14612-14617 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T97 15163-15166 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T98 15163-15166 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T99 15217-15218 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T100 15441-15442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 15468-15470 http://purl.obolibrary.org/obo/CLO_0008491 denotes ps
T102 15588-15589 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 15888-15889 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 15945-15948 http://purl.obolibrary.org/obo/CLO_0001562 denotes Å−2
T105 15945-15948 http://purl.obolibrary.org/obo/CLO_0001563 denotes Å−2
T106 16263-16264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 16296-16300 http://purl.obolibrary.org/obo/CLO_0001146 denotes 1Å−2
T108 16356-16358 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T109 16888-16891 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T110 17353-17356 http://purl.obolibrary.org/obo/CLO_0004265 denotes H−T
T111 17373-17378 http://purl.obolibrary.org/obo/CLO_0008922 denotes S (2)
T112 17373-17378 http://purl.obolibrary.org/obo/CLO_0050052 denotes S (2)
T113 18826-18827 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 18894-18895 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 20276-20279 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T116 20597-20599 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T117 21069-21072 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T118 21893-21896 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T119 22267-22275 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T120 22443-22448 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T121 22493-22497 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T122 22500-22503 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T123 22619-22627 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T124 22641-22648 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T125 22667-22672 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T126 22687-22688 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T127 22693-22694 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T128 22695-22702 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T129 22722-22726 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T130 22775-22783 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T131 22800-22813 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T132 22865-22866 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T133 22867-22872 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T134 22908-22909 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 22938-22941 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T136 22998-23006 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T137 23074-23077 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T138 23214-23219 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T139 23243-23251 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T140 23512-23514 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T141 23678-23681 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T142 24048-24049 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T143 24080-24081 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T144 24270-24271 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T145 24278-24279 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T146 24286-24287 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T147 24294-24295 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T148 24302-24303 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T149 24310-24311 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T150 24318-24319 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T151 24326-24327 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T152 24337-24338 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T153 24465-24468 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T154 24713-24714 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T155 24727-24728 http://purl.obolibrary.org/obo/CLO_0001020 denotes
T156 24899-24900 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T157 24979-24980 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T158 25324-25325 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T159 25333-25334 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T160 25343-25345 http://purl.obolibrary.org/obo/CLO_0001562 denotes Å2
T161 25343-25345 http://purl.obolibrary.org/obo/CLO_0001563 denotes Å2
T162 25819-25822 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T163 26166-26169 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T164 26185-26186 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T165 26250-26251 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T166 26403-26404 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T167 26567-26568 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T168 26602-26603 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 26752-26753 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T170 26814-26815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 26891-26897 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T172 27890-27891 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T173 27899-27900 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T174 27908-27909 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T175 27917-27918 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T176 27926-27927 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T177 27935-27936 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T178 27944-27945 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T179 27953-27954 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T180 27965-27966 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T181 28067-28070 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T182 28545-28546 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 28612-28614 http://purl.obolibrary.org/obo/CLO_0001562 denotes Å2
T184 28612-28614 http://purl.obolibrary.org/obo/CLO_0001563 denotes Å2
T185 28737-28739 http://purl.obolibrary.org/obo/CLO_0001562 denotes Å2
T186 28737-28739 http://purl.obolibrary.org/obo/CLO_0001563 denotes Å2
T187 29032-29033 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 29318-29320 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T189 29318-29320 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T190 29659-29660 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T191 30579-30580 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 30658-30659 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T193 30908-30909 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T194 30934-30935 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T195 31562-31565 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T196 31577-31579 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T197 31577-31579 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T198 31944-31945 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 32197-32200 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T200 32267-32269 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T201 32267-32269 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T202 32963-32964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 33644-33647 http://purl.obolibrary.org/obo/CLO_0008190 denotes Per
T204 36273-36275 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T205 36479-36480 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T206 37171-37173 http://purl.obolibrary.org/obo/CLO_0008149 denotes NE
T207 37954-37955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 38343-38344 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T209 38922-38924 http://purl.obolibrary.org/obo/CLO_0008149 denotes NE
T210 39765-39766 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T211 40095-40096 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T212 40525-40528 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T213 40529-40530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T214 40608-40609 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T215 40732-40733 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T216 40753-40754 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T217 41116-41123 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T218 41157-41158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T219 41322-41323 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T220 41384-41385 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T221 41661-41662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T222 41809-41811 http://purl.obolibrary.org/obo/CLO_0007622 denotes MD
T223 41885-41890 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T224 41891-41896 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T225 41914-41923 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T226 41925-41930 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco2
T227 41925-41930 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco2
T228 41925-41930 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco2
T229 41925-41930 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco2
T230 41949-41954 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T231 41955-41965 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T232 41955-41965 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T233 42041-42042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T234 42137-42142 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco2
T235 42137-42142 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco2
T236 42137-42142 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco2
T237 42137-42142 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco2
T238 42213-42218 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T239 42219-42228 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestine
T240 42219-42228 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestine
T241 42392-42400 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T242 42447-42450 http://purl.obolibrary.org/obo/CLO_0001547 denotes a P
T243 42497-42500 http://purl.obolibrary.org/obo/CLO_0001547 denotes a P
T244 42761-42762 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T245 42843-42849 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T246 42873-42879 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T247 43021-43022 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T248 43087-43093 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T249 43139-43145 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T250 43146-43154 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T251 43390-43412 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T252 43390-43412 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T253 43390-43412 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T254 43417-43422 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T255 43417-43422 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T256 43423-43428 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T257 43423-43428 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T258 43501-43506 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T259 43501-43506 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T260 43535-43557 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T261 43535-43557 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T262 43535-43557 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T263 43770-43773 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T264 43823-43824 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T265 43925-43926 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T266 43951-43953 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T267 43992-43993 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T268 44050-44065 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T269 44070-44075 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T270 44070-44075 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T271 44152-44158 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T272 44259-44266 http://purl.obolibrary.org/obo/OBI_0100026 denotes organic
T273 44259-44266 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organic
T274 44464-44469 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faces
T275 44509-44515 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T276 44563-44568 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T277 44807-44811 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T278 45078-45083 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T279 45090-45091 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T280 45106-45110 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T281 45145-45148 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T282 45317-45322 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T283 45673-45677 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T284 45673-45677 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T285 45673-45677 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T286 45673-45677 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T287 45673-45677 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T288 45911-45916 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T289 46147-46151 http://purl.obolibrary.org/obo/UBERON_0000014 denotes Skin
T290 46147-46151 http://purl.obolibrary.org/obo/UBERON_0001003 denotes Skin
T291 46147-46151 http://purl.obolibrary.org/obo/UBERON_0002097 denotes Skin
T292 46147-46151 http://purl.obolibrary.org/obo/UBERON_0002199 denotes Skin
T293 46147-46151 http://www.ebi.ac.uk/efo/EFO_0000962 denotes Skin
T294 46303-46308 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T295 46539-46543 http://purl.obolibrary.org/obo/UBERON_0000014 denotes Skin
T296 46539-46543 http://purl.obolibrary.org/obo/UBERON_0001003 denotes Skin
T297 46539-46543 http://purl.obolibrary.org/obo/UBERON_0002097 denotes Skin
T298 46539-46543 http://purl.obolibrary.org/obo/UBERON_0002199 denotes Skin
T299 46539-46543 http://www.ebi.ac.uk/efo/EFO_0000962 denotes Skin
T300 46696-46701 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T301 46932-46936 http://purl.obolibrary.org/obo/UBERON_0000014 denotes Skin
T302 46932-46936 http://purl.obolibrary.org/obo/UBERON_0001003 denotes Skin
T303 46932-46936 http://purl.obolibrary.org/obo/UBERON_0002097 denotes Skin
T304 46932-46936 http://purl.obolibrary.org/obo/UBERON_0002199 denotes Skin
T305 46932-46936 http://www.ebi.ac.uk/efo/EFO_0000962 denotes Skin
T306 47089-47094 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T307 47325-47329 http://purl.obolibrary.org/obo/UBERON_0000014 denotes Skin
T308 47325-47329 http://purl.obolibrary.org/obo/UBERON_0001003 denotes Skin
T309 47325-47329 http://purl.obolibrary.org/obo/UBERON_0002097 denotes Skin
T310 47325-47329 http://purl.obolibrary.org/obo/UBERON_0002199 denotes Skin
T311 47325-47329 http://www.ebi.ac.uk/efo/EFO_0000962 denotes Skin
T312 47488-47493 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T313 47724-47728 http://purl.obolibrary.org/obo/UBERON_0000014 denotes Skin
T314 47724-47728 http://purl.obolibrary.org/obo/UBERON_0001003 denotes Skin
T315 47724-47728 http://purl.obolibrary.org/obo/UBERON_0002097 denotes Skin
T316 47724-47728 http://purl.obolibrary.org/obo/UBERON_0002199 denotes Skin
T317 47724-47728 http://www.ebi.ac.uk/efo/EFO_0000962 denotes Skin
T318 48141-48142 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T319 48474-48475 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T320 48935-48936 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T321 49211-49218 http://purl.obolibrary.org/obo/CLO_0001658 denotes actives
T322 49335-49336 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T323 49345-49346 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T324 49571-49572 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T325 49649-49650 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T326 49694-49695 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T327 50039-50042 http://purl.obolibrary.org/obo/CLO_0009325 denotes TF1
T328 50716-50717 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T329 51019-51020 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 22-33 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T2 47-62 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T3 47-56 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T4 57-62 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T5 441-445 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T6 521-525 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T7 539-543 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T8 581-589 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T9 719-733 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T10 719-728 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T11 729-733 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T12 779-790 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T13 860-871 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T14 1022-1033 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T15 1130-1141 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T16 1310-1314 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T17 1316-1326 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T18 1334-1344 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T19 1350-1357 Chemical denotes gallate http://purl.obolibrary.org/obo/CHEBI_16918
T20 1366-1376 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T21 1380-1387 Chemical denotes gallate http://purl.obolibrary.org/obo/CHEBI_16918
T22 1396-1421 Chemical denotes theaflavin 3,3'-digallate http://purl.obolibrary.org/obo/CHEBI_136608
T23 1396-1406 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T24 1412-1421 Chemical denotes digallate http://purl.obolibrary.org/obo/CHEBI_17866
T25 1423-1426 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T26 1429-1439 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T27 1441-1454 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T28 1460-1469 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T30 1573-1577 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T31 1591-1594 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T32 1703-1705 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T34 1913-1917 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T35 1931-1934 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T36 2547-2551 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T37 3299-3307 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T38 3335-3343 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 3471-3478 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T40 3586-3590 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T41 4108-4118 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T42 4368-4382 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T43 4368-4377 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T44 4378-4382 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T45 4586-4596 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T46 4694-4698 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T47 4944-4953 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T50 4968-4972 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T51 5187-5197 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T52 5430-5438 Chemical denotes vitamins http://purl.obolibrary.org/obo/CHEBI_33229
T53 5456-5467 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T54 5469-5479 Chemical denotes flavonoids http://purl.obolibrary.org/obo/CHEBI_47916|http://purl.obolibrary.org/obo/CHEBI_72544
T56 5481-5490 Chemical denotes flavonols http://purl.obolibrary.org/obo/CHEBI_28802
T57 5496-5507 Chemical denotes carotenoids http://purl.obolibrary.org/obo/CHEBI_23044
T58 5986-5995 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T59 6151-6154 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T60 6254-6264 Chemical denotes flavonoids http://purl.obolibrary.org/obo/CHEBI_47916|http://purl.obolibrary.org/obo/CHEBI_72544
T62 6351-6361 Chemical denotes flavonoids http://purl.obolibrary.org/obo/CHEBI_47916|http://purl.obolibrary.org/obo/CHEBI_72544
T64 6363-6376 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T65 6515-6524 Chemical denotes catechins http://purl.obolibrary.org/obo/CHEBI_23053
T66 6693-6697 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T67 6711-6721 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T68 6797-6801 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T69 6902-6904 Chemical denotes Ho http://purl.obolibrary.org/obo/CHEBI_49648
T70 7018-7028 Chemical denotes flavonoids http://purl.obolibrary.org/obo/CHEBI_47916|http://purl.obolibrary.org/obo/CHEBI_72544
T72 7029-7039 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T73 7220-7224 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T74 7238-7242 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T75 7648-7653 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T76 7706-7717 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T77 7781-7795 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T78 7781-7790 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T79 7791-7795 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T80 7860-7871 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T81 7924-7934 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T82 8022-8033 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T83 8126-8137 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T84 8139-8149 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T85 8157-8167 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T86 8173-8180 Chemical denotes gallate http://purl.obolibrary.org/obo/CHEBI_16918
T87 8189-8199 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T88 8203-8210 Chemical denotes gallate http://purl.obolibrary.org/obo/CHEBI_16918
T89 8219-8229 Chemical denotes theaflavin http://purl.obolibrary.org/obo/CHEBI_136609
T90 8235-8244 Chemical denotes digallate http://purl.obolibrary.org/obo/CHEBI_17866
T91 8246-8249 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T92 8252-8262 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T93 8264-8268 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T94 8270-8279 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T96 8285-8298 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T97 8575-8586 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T98 8646-8648 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T100 8686-8689 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T102 8707-8717 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T103 8845-8852 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T104 8912-8914 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T105 8964-8971 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T106 9077-9085 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T107 9086-9091 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T108 9357-9367 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T109 9502-9511 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T110 9587-9590 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T112 9592-9602 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T113 9625-9636 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T114 9987-9998 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T115 10033-10036 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T117 10041-10051 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T118 10089-10091 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T119 10230-10233 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T120 10246-10254 Chemical denotes Cyanidin http://purl.obolibrary.org/obo/CHEBI_27843
T121 10282-10290 Chemical denotes Daidzein http://purl.obolibrary.org/obo/CHEBI_28197
T122 10354-10361 Chemical denotes Wogonin http://purl.obolibrary.org/obo/CHEBI_10043
T123 10372-10382 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T125 10395-10404 Chemical denotes Phloretin http://purl.obolibrary.org/obo/CHEBI_17276
T126 10415-10419 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T127 10451-10460 Chemical denotes Myricetin http://purl.obolibrary.org/obo/CHEBI_18152
T128 10495-10508 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T129 10541-10550 Chemical denotes Quercetin http://purl.obolibrary.org/obo/CHEBI_16243
T130 10562-10572 Chemical denotes Pinosylvin http://purl.obolibrary.org/obo/CHEBI_36011
T131 10583-10591 Chemical denotes Curcumin http://purl.obolibrary.org/obo/CHEBI_3962
T132 10603-10615 Chemical denotes Formononetin http://purl.obolibrary.org/obo/CHEBI_18088
T133 10654-10668 Chemical denotes Liquiritigenin http://purl.obolibrary.org/obo/CHEBI_28777
T134 10679-10687 Chemical denotes Peonidin http://purl.obolibrary.org/obo/CHEBI_75033
T135 10699-10707 Chemical denotes Prunetin http://purl.obolibrary.org/obo/CHEBI_8600
T136 10718-10725 Chemical denotes Fisetin http://purl.obolibrary.org/obo/CHEBI_42567
T137 10778-10789 Chemical denotes Biochanin A http://purl.obolibrary.org/obo/CHEBI_17574
T138 10851-10861 Chemical denotes Kaempferol http://purl.obolibrary.org/obo/CHEBI_28499
T139 10873-10882 Chemical denotes Genistein http://purl.obolibrary.org/obo/CHEBI_27514|http://purl.obolibrary.org/obo/CHEBI_28088
T141 10893-10905 Chemical denotes Scutellarein http://purl.obolibrary.org/obo/CHEBI_9062
T142 10962-10978 Chemical denotes 6-Hydroxyflavone http://purl.obolibrary.org/obo/CHEBI_34472
T143 10989-10997 Chemical denotes Purpurin http://purl.obolibrary.org/obo/CHEBI_8645
T144 11009-11014 Chemical denotes Equol http://purl.obolibrary.org/obo/CHEBI_34741
T145 11025-11037 Chemical denotes Isorhamnetin http://purl.obolibrary.org/obo/CHEBI_6052
T146 11049-11060 Chemical denotes Piceatannol http://purl.obolibrary.org/obo/CHEBI_28814
T147 11071-11079 Chemical denotes Tricetin http://purl.obolibrary.org/obo/CHEBI_507499
T148 11118-11128 Chemical denotes Gossypetin http://purl.obolibrary.org/obo/CHEBI_16400
T149 11140-11151 Chemical denotes Resveratrol http://purl.obolibrary.org/obo/CHEBI_27881|http://purl.obolibrary.org/obo/CHEBI_45713
T151 11162-11173 Chemical denotes Norathyriol http://purl.obolibrary.org/obo/CHEBI_7622
T152 11205-11215 Chemical denotes Coumestrol http://purl.obolibrary.org/obo/CHEBI_3908
T153 11245-11259 Chemical denotes Isosakuranetin http://purl.obolibrary.org/obo/CHEBI_27552
T154 11279-11283 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T155 11322-11335 Chemical denotes Pterostilbene http://purl.obolibrary.org/obo/CHEBI_8630
T156 11368-11380 Chemical denotes Ferulic acid http://purl.obolibrary.org/obo/CHEBI_17620
T157 11376-11380 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T158 11412-11424 Chemical denotes Caffeic acid http://purl.obolibrary.org/obo/CHEBI_16433|http://purl.obolibrary.org/obo/CHEBI_17395
T160 11420-11424 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T161 11435-11445 Chemical denotes Pratensein http://purl.obolibrary.org/obo/CHEBI_8359
T162 11468-11472 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T163 11483-11493 Chemical denotes Hispidulin http://purl.obolibrary.org/obo/CHEBI_75902
T164 11520-11524 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T165 11535-11544 Chemical denotes Baicalein http://purl.obolibrary.org/obo/CHEBI_2979
T166 11556-11569 Chemical denotes Gentisic acid http://purl.obolibrary.org/obo/CHEBI_17189
T167 11565-11569 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T168 11580-11588 Chemical denotes Apigenin http://purl.obolibrary.org/obo/CHEBI_18388
T169 11600-11610 Chemical denotes Pyrogallol http://purl.obolibrary.org/obo/CHEBI_16164
T170 11638-11660 Chemical denotes 4-Hydroxycinnamic acid http://purl.obolibrary.org/obo/CHEBI_32374
T171 11656-11660 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T172 11694-11709 Chemical denotes Resacetophenone http://purl.obolibrary.org/obo/CHEBI_18414
T173 11720-11728 Chemical denotes Acacetin http://purl.obolibrary.org/obo/CHEBI_15335
T174 11751-11755 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T175 11766-11778 Chemical denotes Pelargonidin http://purl.obolibrary.org/obo/CHEBI_28510
T176 11799-11803 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T177 11814-11821 Chemical denotes Irilone http://purl.obolibrary.org/obo/CHEBI_5970
T178 11850-11854 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T179 11865-11875 Chemical denotes Naringenin http://purl.obolibrary.org/obo/CHEBI_17846
T180 11887-11898 Chemical denotes Gallic acid http://purl.obolibrary.org/obo/CHEBI_30778
T181 11894-11898 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T182 11932-11953 Chemical denotes 3-Hydroxybenzoic acid http://purl.obolibrary.org/obo/CHEBI_30764
T183 11949-11953 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T184 11964-11975 Chemical denotes Kaempferide http://purl.obolibrary.org/obo/CHEBI_6099
T185 11987-12008 Chemical denotes 4-Hydroxybenzoic acid http://purl.obolibrary.org/obo/CHEBI_30763
T186 12004-12008 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T187 12019-12027 Chemical denotes Malvidin http://purl.obolibrary.org/obo/CHEBI_6674
T188 12039-12047 Chemical denotes Vanillin http://purl.obolibrary.org/obo/CHEBI_18346
T189 12058-12066 Chemical denotes Luteolin http://purl.obolibrary.org/obo/CHEBI_15864
T190 12089-12093 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T191 12104-12113 Chemical denotes Dalbergin http://purl.obolibrary.org/obo/CHEBI_4308
T192 12125-12138 Chemical denotes Vanillic acid http://purl.obolibrary.org/obo/CHEBI_30816
T193 12134-12138 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T194 12149-12155 Chemical denotes Butein http://purl.obolibrary.org/obo/CHEBI_3237
T195 12167-12174 Chemical denotes Paeonol http://purl.obolibrary.org/obo/CHEBI_69581
T196 12185-12196 Chemical denotes Biochanin A http://purl.obolibrary.org/obo/CHEBI_17574
T197 12213-12226 Chemical denotes Cinnamic acid http://purl.obolibrary.org/obo/CHEBI_27386
T198 12222-12226 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T199 12237-12243 Chemical denotes Fustin http://purl.obolibrary.org/obo/CHEBI_5202
T200 12255-12274 Chemical denotes Protocatechuic acid http://purl.obolibrary.org/obo/CHEBI_36062
T201 12270-12274 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T202 12313-12326 Chemical denotes 4-Ethylphenol http://purl.obolibrary.org/obo/CHEBI_49584
T203 12360-12368 Chemical denotes Catechol http://purl.obolibrary.org/obo/CHEBI_18135
T204 12403-12410 Chemical denotes Tyrosol http://purl.obolibrary.org/obo/CHEBI_1879
T205 12445-12448 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T207 12460-12468 Chemical denotes Galangin http://purl.obolibrary.org/obo/CHEBI_5262
T208 12595-12606 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T209 12608-12618 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T210 12624-12627 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T212 12732-12738 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T213 12835-12839 Chemical denotes atom http://purl.obolibrary.org/obo/CHEBI_33250
T214 12861-12868 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T215 13060-13066 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T216 13209-13215 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T217 13216-13224 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T218 13265-13272 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T219 13273-13279 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T220 13326-13333 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T221 13334-13340 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T222 13545-13552 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T223 13553-13559 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T224 13663-13671 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T225 13705-13709 Chemical denotes atom http://purl.obolibrary.org/obo/CHEBI_33250
T226 13902-13906 Chemical denotes atom http://purl.obolibrary.org/obo/CHEBI_33250
T227 13927-13929 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T228 14007-14018 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T229 14072-14082 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T230 14102-14111 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T231 14251-14253 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T232 14331-14334 Chemical denotes RTX http://purl.obolibrary.org/obo/CHEBI_8809
T233 14510-14519 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T234 14659-14662 Chemical denotes AM1 http://purl.obolibrary.org/obo/CHEBI_140154
T235 14851-14856 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T236 14881-14886 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T237 14887-14896 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T238 15020-15022 Chemical denotes Na http://purl.obolibrary.org/obo/CHEBI_26708
T239 15024-15027 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T240 15057-15065 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T241 15066-15071 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T242 15823-15828 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T243 16322-16327 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T244 16356-16358 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T245 16664-16666 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T247 16882-16886 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T248 16893-16896 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T249 16910-16920 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T250 16922-16931 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T252 16933-16946 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T253 16952-16962 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T254 17067-17069 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T256 17289-17291 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T258 18035-18045 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T259 18046-18053 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T260 18166-18173 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T261 18238-18240 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T263 18339-18343 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T264 18357-18360 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T265 18366-18376 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T266 18844-18852 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T267 18863-18869 Chemical denotes lipids http://purl.obolibrary.org/obo/CHEBI_18059
T268 18961-18970 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T269 19034-19043 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T270 19207-19217 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T271 19219-19223 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T272 19241-19244 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T273 19463-19474 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T274 19539-19549 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T275 19594-19596 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T276 19663-19674 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T277 19840-19851 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T278 19921-19927 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T279 19928-19938 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T280 19928-19933 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T281 19934-19938 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T282 19972-19975 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T284 19980-19990 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T285 20097-20108 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T286 20192-20203 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T287 20265-20268 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T288 20287-20297 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T289 20299-20303 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T290 20305-20314 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T292 20319-20332 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T293 20509-20520 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T294 20652-20662 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T295 20652-20657 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T296 20658-20662 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T297 20705-20716 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T298 20839-20850 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T299 20839-20844 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T300 20845-20850 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T301 20854-20857 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T302 21260-21270 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T304 21362-21366 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T305 21433-21442 Chemical denotes Myricetin http://purl.obolibrary.org/obo/CHEBI_18152
T306 21516-21529 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T307 21703-21706 Chemical denotes GTP http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565
T309 21832-21842 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T310 21880-21891 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T311 21910-21913 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T312 21915-21925 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T313 21927-21931 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T314 21933-21942 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T316 21947-21960 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T317 22004-22014 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T318 22061-22068 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T319 22155-22166 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T320 22368-22379 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T321 22512-22519 Chemical denotes gallate http://purl.obolibrary.org/obo/CHEBI_16918
T322 22565-22576 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T323 22609-22618 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T324 22729-22739 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T326 22765-22774 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T327 22902-22906 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T328 22926-22936 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T329 22988-22997 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T330 23064-23073 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T332 23107-23116 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T333 23169-23182 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T334 23314-23325 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T335 23386-23391 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T336 23512-23514 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T337 23660-23670 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T338 23672-23676 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T339 23695-23698 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T340 23700-23710 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T341 23712-23721 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T343 23727-23740 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T344 23936-23941 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T345 24348-24358 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T346 24365-24369 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T347 24376-24379 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T348 24408-24417 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T350 24424-24437 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T351 24444-24454 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T352 24563-24572 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T354 24684-24695 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T355 24684-24689 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T356 24690-24695 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T357 24738-24747 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T358 24968-24973 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T359 25030-25035 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T360 25178-25185 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T361 25413-25417 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T362 25468-25471 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T363 25633-25642 Chemical denotes Myricetin http://purl.obolibrary.org/obo/CHEBI_18152
T364 25694-25707 Chemical denotes Quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T365 25758-25768 Chemical denotes Hesperidin http://purl.obolibrary.org/obo/CHEBI_28775|http://purl.obolibrary.org/obo/CHEBI_61606
T367 25918-25928 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T368 25939-25950 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T369 25993-25998 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T370 26134-26138 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T371 26140-26149 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T373 26151-26164 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T374 26171-26174 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T375 26262-26272 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T376 26289-26299 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T377 26361-26372 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T378 26508-26513 Chemical denotes atoms http://purl.obolibrary.org/obo/CHEBI_33250
T379 26651-26661 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T380 26674-26685 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T381 26775-26785 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T382 26795-26806 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T383 27392-27401 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T384 27433-27436 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T385 27535-27545 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T386 27576-27579 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T387 27649-27660 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T388 27724-27731 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T389 27991-28001 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T390 28003-28007 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T391 28009-28012 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T392 28026-28035 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T394 28037-28050 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T395 28052-28062 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T396 28193-28200 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T397 28296-28306 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T398 28441-28450 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T399 28520-28527 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T400 28643-28652 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T401 28724-28727 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T402 28788-28791 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T403 28817-28824 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T404 28950-28952 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T406 28975-28986 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T407 28995-28999 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T408 29001-29004 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T409 29072-29082 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T410 29157-29161 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T411 29163-29166 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T412 29227-29238 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T413 29288-29298 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T414 29318-29320 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T415 29482-29488 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T416 29802-29812 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T417 29822-29833 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T418 30120-30131 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T419 30143-30153 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T420 30240-30244 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T421 30246-30249 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T422 31198-31208 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T423 31215-31219 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T424 31226-31229 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T425 31505-31514 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T427 31521-31534 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T428 31541-31551 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T429 31577-31579 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T430 31839-31850 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T431 31862-31872 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T432 32034-32044 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T433 32046-32050 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T434 32052-32055 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T435 32156-32165 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T437 32167-32180 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T438 32182-32192 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T439 32249-32259 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T440 32267-32269 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T441 32324-32334 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T442 32335-32338 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T443 32389-32393 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T444 32419-32429 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T445 32464-32467 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T446 32477-32481 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T447 32491-32501 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T448 32503-32506 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T449 32621-32631 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T450 32689-32693 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T451 32817-32821 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T452 32926-32937 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T453 33004-33015 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T454 33020-33030 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T455 33102-33113 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T456 33140-33142 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T458 33256-33265 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T459 33596-33606 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T460 33608-33612 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T461 33614-33617 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T462 33718-33728 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T463 33730-33734 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T464 33736-33739 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T465 34140-34144 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T466 34422-34425 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T467 35570-35581 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T468 35817-35828 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T469 35833-35843 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T470 35865-35876 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T471 35865-35870 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T472 35871-35876 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T473 35912-35922 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T474 35967-35971 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T475 36024-36027 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T476 36273-36275 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T477 36293-36301 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T478 36446-36454 Chemical denotes acceptor http://purl.obolibrary.org/obo/CHEBI_15339
T479 36455-36460 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T480 36543-36553 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T481 36597-36607 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T482 36638-36646 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T483 36742-36752 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T484 36767-36770 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T485 36788-36791 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T486 36879-36883 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T487 36934-36940 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T488 37038-37041 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T489 37056-37059 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T490 37134-37140 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T491 37155-37158 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T492 37171-37173 Chemical denotes NE http://purl.obolibrary.org/obo/CHEBI_73824
T493 37176-37179 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T494 37295-37301 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T495 37471-37477 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T496 37492-37495 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T497 37513-37516 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T498 37680-37683 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T499 37691-37694 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T500 37851-37854 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T501 37873-37876 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T502 37975-37978 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T503 38034-38042 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T504 38069-38076 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T505 38102-38110 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T506 38149-38159 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T507 38164-38175 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T508 38311-38319 Chemical denotes Acceptor http://purl.obolibrary.org/obo/CHEBI_15339
T509 38321-38326 Chemical denotes Donor http://purl.obolibrary.org/obo/CHEBI_17499|http://purl.obolibrary.org/obo/CHEBI_17891
T511 38389-38392 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T512 38421-38424 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T513 38453-38456 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T514 38485-38488 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T515 38505-38508 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T516 38548-38551 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T517 38573-38577 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T518 38590-38593 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T519 38622-38625 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T520 38654-38657 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T521 38686-38689 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T522 38718-38721 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T523 38749-38752 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T524 38775-38778 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T525 38791-38794 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T526 38822-38825 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T527 38853-38856 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T528 38857-38859 Chemical denotes O3 http://purl.obolibrary.org/obo/CHEBI_25812
T529 38873-38876 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T530 38906-38909 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T531 38922-38924 Chemical denotes NE http://purl.obolibrary.org/obo/CHEBI_73824
T532 38950-38953 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T533 38991-38994 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T534 39011-39014 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T535 39055-39058 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T536 39087-39090 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T537 39119-39122 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T538 39151-39154 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T539 39193-39196 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T540 39226-39229 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T541 39257-39260 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T542 39290-39293 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T543 39323-39326 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T544 39356-39359 Chemical denotes Lig http://purl.obolibrary.org/obo/CHEBI_31015
T545 39600-39608 Chemical denotes Hydrogen http://purl.obolibrary.org/obo/CHEBI_18276
T546 39736-39746 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T547 39983-39993 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T548 40003-40007 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T549 40115-40118 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T550 40521-40524 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T551 40589-40600 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T552 40634-40642 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T553 40699-40706 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T554 40740-40750 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T555 40761-40765 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T556 40776-40779 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T557 40818-40829 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T558 40834-40844 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T559 40876-40884 Chemical denotes Hydrogen http://purl.obolibrary.org/obo/CHEBI_18276
T560 41165-41173 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T561 41196-41203 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T562 41307-41316 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T563 41386-41390 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T564 41563-41567 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T565 41704-41708 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T566 41732-41743 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T567 41745-41749 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T568 41763-41766 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T569 41809-41811 Chemical denotes MD http://purl.obolibrary.org/obo/CHEBI_74699
T570 41827-41829 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T572 41873-41883 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T573 42043-42047 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T574 42073-42077 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T575 42091-42094 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T576 42100-42110 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T577 42256-42260 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T578 42274-42277 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T579 42283-42293 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T580 42342-42354 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T581 42358-42370 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T582 42401-42408 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T583 42419-42429 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T584 42451-42463 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T585 42466-42475 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T586 42481-42485 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T587 42490-42493 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T588 42501-42513 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T589 42514-42516 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T590 42517-42526 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T591 42560-42572 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T592 42579-42581 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T593 42582-42591 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T594 42679-42691 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T595 42703-42705 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T596 42763-42767 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T597 42808-42813 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T598 42880-42888 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T599 42900-42908 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T600 42979-42983 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T601 42997-43000 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T602 43006-43016 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T603 43188-43198 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T604 43201-43205 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T605 43222-43225 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T606 43233-43235 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401
T607 43376-43381 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T608 43613-43618 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T609 43714-43717 Chemical denotes CYP http://purl.obolibrary.org/obo/CHEBI_38559
T610 43750-43754 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T611 43799-43802 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T612 43808-43818 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T613 43917-43921 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T614 43927-43943 Chemical denotes CYP3A4 inhibitor http://purl.obolibrary.org/obo/CHEBI_86501
T615 43934-43943 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T616 43951-43953 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T617 44009-44013 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T618 44106-44117 Chemical denotes glucuronide http://purl.obolibrary.org/obo/CHEBI_24302
T619 44119-44125 Chemical denotes methyl http://purl.obolibrary.org/obo/CHEBI_32875|http://purl.obolibrary.org/obo/CHEBI_29309
T621 44126-44134 Chemical denotes sulfates http://purl.obolibrary.org/obo/CHEBI_26820|http://purl.obolibrary.org/obo/CHEBI_35175
T623 44214-44217 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T624 44259-44273 Chemical denotes organic cation http://purl.obolibrary.org/obo/CHEBI_25697
T625 44267-44273 Chemical denotes cation http://purl.obolibrary.org/obo/CHEBI_36916
T626 44363-44367 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T627 44379-44389 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T628 44482-44486 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T629 44710-44714 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T630 44728-44731 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T631 44743-44753 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T632 45014-45018 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T633 45032-45035 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T634 45041-45051 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T635 45084-45089 Chemical denotes ether http://purl.obolibrary.org/obo/CHEBI_25698
T636 45111-45113 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T637 45120-45122 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T638 45193-45197 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T639 45211-45214 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T640 45345-45355 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T641 45385-45395 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T642 45396-45400 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T643 45414-45417 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T644 45506-45510 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T645 45528-45531 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T646 45733-45737 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T647 45739-45742 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T648 45760-45770 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T649 45857-45861 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T650 45954-45963 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T651 45979-45981 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T652 45982-45991 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T653 46250-46253 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T654 46346-46355 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T655 46371-46373 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T656 46374-46383 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T657 46739-46748 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T658 46764-46766 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T659 46767-46776 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T660 47132-47141 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T661 47157-47159 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T662 47160-47169 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T663 47530-47539 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T664 47555-47557 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T665 47558-47567 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T666 47874-47884 Chemical denotes polyphenol http://purl.obolibrary.org/obo/CHEBI_26195
T667 47960-47971 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T668 48006-48014 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T669 48085-48102 Chemical denotes biomacromolecules http://purl.obolibrary.org/obo/CHEBI_33694
T670 48111-48119 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T671 48183-48194 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T672 48210-48218 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T673 48306-48317 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T674 48370-48378 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T675 48454-48461 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T676 48488-48496 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T677 48544-48552 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T678 48565-48569 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T679 48583-48586 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T680 48592-48602 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T681 48687-48698 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T682 48854-48865 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T683 48954-48962 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T684 49001-49005 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T685 49019-49022 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T686 49028-49038 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T687 49159-49161 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T688 49170-49172 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T689 49338-49342 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T690 49367-49370 Chemical denotes TF3 http://purl.obolibrary.org/obo/CHEBI_136608
T691 49380-49390 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T46875 49555-49565 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T22320 49723-49734 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T80937 49750-49759 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T24344 49870-49881 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T98962 50028-50032 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T71966 50081-50091 Chemical denotes hesperidin http://purl.obolibrary.org/obo/CHEBI_28775
T90398 50098-50107 Chemical denotes myricetin http://purl.obolibrary.org/obo/CHEBI_18152|http://purl.obolibrary.org/obo/CHEBI_58395
T23792 50114-50127 Chemical denotes quercetagetin http://purl.obolibrary.org/obo/CHEBI_8695
T42245 50145-50155 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T90588 50257-50259 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T93177 50390-50401 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T65194 50596-50602 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T29242 50655-50657 Chemical denotes MM http://purl.obolibrary.org/obo/CHEBI_53458|http://purl.obolibrary.org/obo/CHEBI_74707
T73139 50682-50686 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T70168 50759-50763 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T25385 50764-50774 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T98626 50988-50992 Chemical denotes EGCG http://purl.obolibrary.org/obo/CHEBI_4806
T66579 51240-51251 Chemical denotes polyphenols http://purl.obolibrary.org/obo/CHEBI_26195
T46661 51273-51283 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 667-682 http://purl.obolibrary.org/obo/GO_0039703 denotes RNA replication
T2 969-980 http://purl.obolibrary.org/obo/GO_0042592 denotes homeostasis
T3 5637-5653 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T4 6738-6759 http://purl.obolibrary.org/obo/GO_0004519 denotes endonuclease activity
T5 6837-6854 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T6 6837-6854 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T7 18467-18477 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T8 22326-22345 http://purl.obolibrary.org/obo/GO_0019083 denotes viral transcription
T9 22332-22345 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T10 26193-26201 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T11 29566-29575 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T12 31770-31779 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T13 41049-41059 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T14 41061-41070 http://purl.obolibrary.org/obo/GO_0007588 denotes excretion
T15 41256-41266 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T16 41268-41277 http://purl.obolibrary.org/obo/GO_0007588 denotes excretion
T17 41955-41976 http://purl.obolibrary.org/obo/GO_0050892 denotes intestinal absorption
T18 42356-42370 http://purl.obolibrary.org/obo/GO_0008559 denotes P-glycoprotein
T19 42385-42391 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T20 42385-42391 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T21 42449-42463 http://purl.obolibrary.org/obo/GO_0008559 denotes P-glycoprotein
T22 42499-42513 http://purl.obolibrary.org/obo/GO_0008559 denotes P-glycoprotein
T23 42558-42572 http://purl.obolibrary.org/obo/GO_0008559 denotes P-glycoprotein
T24 42677-42691 http://purl.obolibrary.org/obo/GO_0008559 denotes P-glycoprotein
T25 42880-42899 http://purl.obolibrary.org/obo/GO_0015031 denotes proteins, transport
T26 42890-42899 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T27 43696-43707 http://purl.obolibrary.org/obo/GO_0045158 denotes Cytochromes
T28 43696-43707 http://purl.obolibrary.org/obo/GO_0045157 denotes Cytochromes
T29 43696-43707 http://purl.obolibrary.org/obo/GO_0045156 denotes Cytochromes
T30 43696-43707 http://purl.obolibrary.org/obo/GO_0008121 denotes Cytochromes
T31 43750-43765 http://purl.obolibrary.org/obo/GO_0017144 denotes drug metabolism
T32 43755-43765 http://purl.obolibrary.org/obo/GO_0008152 denotes metabolism
T33 44083-44102 http://purl.obolibrary.org/obo/GO_0000761 denotes conjugate formation
T34 44093-44102 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T35 44259-44285 http://purl.obolibrary.org/obo/GO_0015695 denotes organic cation transporter
T36 45678-45691 http://purl.obolibrary.org/obo/GO_0046960 denotes sensitization
T37 48454-48469 http://purl.obolibrary.org/obo/GO_0006605 denotes protein targets
T38 48757-48772 http://purl.obolibrary.org/obo/GO_0039703 denotes RNA replication
T39 49824-49839 http://purl.obolibrary.org/obo/GO_0039703 denotes RNA replication
T40 50339-50348 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 116-120 Gene denotes RdRp Gene:43740578
4 71-81 Species denotes SARS-CoV-2 Tax:2697049
5 22-33 Chemical denotes polyphenols MESH:D059808
44 640-644 Gene denotes RdRp Gene:43740578
45 815-819 Gene denotes RdRp Gene:43740578
46 1050-1054 Gene denotes RdRp Gene:43740578
47 1273-1277 Gene denotes RdRp Gene:43740578
48 1389-1393 Gene denotes TF2b Gene:2959
49 1506-1510 Gene denotes RdRp Gene:43740578
50 1585-1589 Gene denotes TF2b Gene:2959
51 1644-1648 Gene denotes RdRp Gene:43740578
52 1925-1929 Gene denotes TF2b Gene:2959
53 1947-1951 Gene denotes RdRp Gene:43740578
54 306-353 Species denotes Severe Acute Respiratory Syndrome Coronavirus 2 Tax:2697049
55 355-365 Species denotes SARS-CoV-2 Tax:2697049
56 656-666 Species denotes SARS-CoV-2 Tax:2697049
57 1039-1049 Species denotes SARS-CoV-2 Tax:2697049
58 779-790 Chemical denotes polyphenols MESH:D059808
59 860-871 Chemical denotes polyphenols MESH:D059808
60 1022-1033 Chemical denotes polyphenols MESH:D059808
61 1130-1141 Chemical denotes polyphenols MESH:D059808
62 1310-1314 Chemical denotes EGCG MESH:C045651
63 1316-1326 Chemical denotes theaflavin MESH:C056068
64 1334-1357 Chemical denotes theaflavin-3’-O-gallate
65 1366-1387 Chemical denotes theaflavin-3’-gallate
66 1396-1421 Chemical denotes theaflavin 3,3'-digallate MESH:C585473
67 1423-1426 Chemical denotes TF3 MESH:C585473
68 1429-1439 Chemical denotes hesperidin MESH:D006569
69 1441-1454 Chemical denotes quercetagetin MESH:C079163
70 1460-1469 Chemical denotes myricetin MESH:C040015
71 1573-1577 Chemical denotes EGCG MESH:C045651
72 1706-1710 Chemical denotes PBSA MESH:C437084
73 1797-1801 Chemical denotes ADME
74 1913-1917 Chemical denotes EGCG MESH:C045651
75 261-280 Disease denotes Coronavirus disease MESH:D018352
76 282-290 Disease denotes COVID-19 MESH:C000657245
77 473-481 Disease denotes COVID-19 MESH:C000657245
78 600-608 Disease denotes COVID-19 MESH:C000657245
79 1091-1099 Disease denotes COVID-19 MESH:C000657245
80 1814-1822 Disease denotes toxicity MESH:D064420
81 1991-1999 Disease denotes COVID-19 MESH:C000657245
109 3373-3374 Gene denotes S Gene:43740568
110 3387-3388 Gene denotes E Gene:43740570
111 3391-3399 Gene denotes membrane Gene:43740571
112 3401-3402 Gene denotes M Gene:43740571
113 3409-3421 Gene denotes nucleocapsid Gene:43740575
114 3423-3424 Gene denotes N Gene:43740575
115 3377-3385 Gene denotes envelope Gene:43740570
116 2390-2396 Species denotes people Tax:9606
117 2616-2663 Species denotes Severe Acute Respiratory Syndrome Coronavirus 2 Tax:2697049
118 2665-2675 Species denotes SARS-CoV-2 Tax:2697049
119 2694-2707 Species denotes Coronaviridae Tax:11118
120 2760-2777 Species denotes Betacoronaviruses Tax:694002
121 2784-2829 Species denotes Severe Acute Respiratory Syndrome Coronavirus Tax:694009
122 2831-2839 Species denotes SARS-CoV Tax:694009
123 2845-2900 Species denotes Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Tax:1335626
124 3097-3107 Species denotes SARS-CoV-2 Tax:2697049
125 3347-3357 Species denotes SARS-CoV-2 Tax:2697049
126 2069-2088 Disease denotes Coronavirus disease MESH:D018352
127 2090-2098 Disease denotes COVID-19 MESH:C000657245
128 2302-2310 Disease denotes COVID-19 MESH:C000657245
129 2567-2575 Disease denotes COVID-19 MESH:C000657245
130 2982-3002 Disease denotes SARS-CoV-2 infection MESH:C000657245
131 3011-3016 Disease denotes fever MESH:D005334
132 3018-3027 Disease denotes dry cough MESH:D003371
133 3029-3048 Disease denotes shortness of breath MESH:D004417
134 3066-3077 Disease denotes sore throat MESH:D010608
135 3235-3239 Disease denotes ORFs MESH:D004474
162 3646-3650 Gene denotes RdRp Gene:43740578
163 3789-3793 Gene denotes RdRp Gene:43740578
164 4048-4052 Gene denotes RdRp Gene:43740578
165 4103-4107 Gene denotes RdRp Gene:43740578
166 4655-4659 Gene denotes RdRp Gene:43740578
167 4868-4872 Gene denotes RdRp Gene:43740578
168 4994-4997 Gene denotes β16 Gene:28910
169 5039-5043 Gene denotes RdRp Gene:43740578
170 4986-4989 Gene denotes β15 Gene:28934
171 4331-4335 Gene denotes RdRp Gene:43740578
172 3860-3864 Gene denotes RdRp Gene:43740578
173 3602-3612 Species denotes SARS-CoV-2 Tax:2697049
174 3805-3818 Species denotes coronaviruses Tax:11118
175 3868-3876 Species denotes SARS-CoV Tax:694009
176 3924-3934 Species denotes SARS-CoV-2 Tax:2697049
177 3966-3971 Species denotes human Tax:9606
178 4058-4071 Species denotes coronaviruses Tax:11118
179 4192-4197 Species denotes human Tax:9606
180 4339-4349 Species denotes SARS-CoV-2 Tax:2697049
181 4755-4772 Species denotes hepatitis C virus Tax:11103
182 4774-4784 Species denotes zika virus Tax:64320
183 4788-4801 Species denotes coronaviruses Tax:11118
184 4384-4394 Chemical denotes Remdesivir MESH:C000606551
185 4516-4526 Chemical denotes Remdesivir MESH:C000606551
186 4944-4953 Chemical denotes aspartate MESH:D001224
187 4614-4634 Disease denotes SARS-CoV-2 infection MESH:C000657245
189 5330-5334 Gene denotes RdRp Gene:43740578
243 6587-6600 Gene denotes neuraminidase Gene:4758
244 7919-7923 Gene denotes RdRp Gene:43740578
245 8042-8046 Gene denotes RdRp Gene:43740578
246 8212-8216 Gene denotes TF2b Gene:2959
247 8345-8349 Gene denotes RdRp Gene:43740578
248 6544-6552 Gene denotes membrane Gene:43740571
249 7560-7564 Gene denotes RdRp Gene:43740578
250 5541-5546 Species denotes human Tax:9606
251 6058-6084 Species denotes parainfluenza virus type 3 Tax:11216
252 6090-6117 Species denotes respiratory syncytial virus Tax:12814
253 6560-6575 Species denotes influenza virus Tax:11308
254 6763-6780 Species denotes influenza A virus Tax:11320
255 7056-7066 Species denotes SARS-CoV-2 Tax:2697049
256 7549-7559 Species denotes SARS-CoV-2 Tax:2697049
257 7908-7918 Species denotes SARS-CoV-2 Tax:2697049
258 8054-8064 Species denotes SARS-CoV-2 Tax:2697049
259 8357-8367 Species denotes SARS-CoV-2 Tax:2697049
260 6316-6319 Species denotes NS5 Tax:260743
261 5456-5467 Chemical denotes polyphenols MESH:D059808
262 5469-5479 Chemical denotes flavonoids MESH:D005419
263 5481-5490 Chemical denotes flavonols MESH:D044948
264 5496-5507 Chemical denotes carotenoids MESH:D002338
265 6254-6264 Chemical denotes flavonoids MESH:D005419
266 6351-6361 Chemical denotes flavonoids MESH:D005419
267 6363-6376 Chemical denotes quercetagetin MESH:C079163
268 6515-6524 Chemical denotes catechins MESH:D002392
269 6693-6697 Chemical denotes EGCG MESH:C045651
270 6711-6721 Chemical denotes polyphenol MESH:D059808
271 6797-6801 Chemical denotes EGCG MESH:C045651
272 7018-7028 Chemical denotes flavonoids MESH:D005419
273 7029-7039 Chemical denotes polyphenol MESH:D059808
274 7706-7717 Chemical denotes polyphenols MESH:D059808
275 7860-7871 Chemical denotes polyphenols MESH:D059808
276 8022-8033 Chemical denotes polyphenols MESH:D059808
277 8126-8137 Chemical denotes polyphenols MESH:D059808
278 8139-8149 Chemical denotes theaflavin MESH:C056068
279 8157-8180 Chemical denotes theaflavin-3′-O-gallate
280 8189-8210 Chemical denotes theaflavin-3′-gallate
281 8219-8244 Chemical denotes theaflavin 3,3′-digallate MESH:C585473
282 8246-8249 Chemical denotes TF3 MESH:C585473
283 8252-8262 Chemical denotes hesperidin MESH:D006569
284 8264-8268 Chemical denotes EGCG MESH:C045651
285 8270-8279 Chemical denotes myricetin MESH:C040015
286 8285-8298 Chemical denotes quercetagetin MESH:C079163
287 8575-8586 Chemical denotes polyphenols MESH:D059808
288 8649-8653 Chemical denotes PBSA MESH:C437084
289 8655-8665 Chemical denotes Remdesivir MESH:C000606551
290 8686-8689 Chemical denotes GTP MESH:D006160
291 5616-5623 Disease denotes cancers MESH:D009369
292 5637-5653 Disease denotes viral infections MESH:D001102
293 5791-5799 Disease denotes toxicity MESH:D064420
294 7639-7647 Disease denotes COVID-19 MESH:C000657245
295 7690-7702 Disease denotes cytotoxicity MESH:D064420
302 8902-8906 Gene denotes RdRp Gene:43740578
303 9387-9391 Gene denotes RdRp Gene:43740578
304 9146-9150 Gene denotes v4.2 Gene:28781
305 8891-8901 Species denotes SARS-CoV-2 Tax:2697049
306 9376-9386 Species denotes SARS-CoV-2 Tax:2697049
307 9077-9085 Chemical denotes hydrogen MESH:D006859
310 9530-9534 Gene denotes RdRp Gene:43740578
311 9519-9529 Species denotes SARS-CoV-2 Tax:2697049
315 9587-9590 Chemical denotes GTP MESH:D006160
316 9592-9602 Chemical denotes remdesivir MESH:C000606551
317 9625-9636 Chemical denotes polyphenols MESH:D059808
322 10265-10269 Gene denotes TF2b Gene:2959
323 10177-10178 Gene denotes S Gene:43740568
324 10127-10128 Gene denotes S Gene:43740568
325 12482-12492 Chemical denotes Remdesivir MESH:C000606551
331 10061-10065 Gene denotes RdRp Gene:43740578
332 10073-10083 Species denotes SARS-CoV-2 Tax:2697049
333 9987-9998 Chemical denotes polyphenols MESH:D059808
334 10033-10036 Chemical denotes GTP MESH:D006160
335 10041-10051 Chemical denotes remdesivir MESH:C000606551
343 12659-12663 Gene denotes RdRp Gene:43740578
344 12998-13002 Gene denotes RdRp Gene:43740578
345 12667-12677 Species denotes SARS-CoV-2 Tax:2697049
346 12987-12997 Species denotes SARS-CoV-2 Tax:2697049
347 12595-12606 Chemical denotes polyphenols MESH:D059808
348 12608-12618 Chemical denotes remdesivir MESH:C000606551
349 12624-12627 Chemical denotes GTP MESH:D006160
351 13663-13671 Chemical denotes hydrogen MESH:D006859
361 14097-14101 Gene denotes RdRp Gene:43740578
362 14475-14478 Gene denotes Kar Gene:8083
363 14659-14662 Species denotes AM1 Tax:408139
364 14007-14018 Chemical denotes polyphenols MESH:D059808
365 14072-14082 Chemical denotes remdesivir MESH:C000606551
366 14727-14738 Chemical denotes antechamber
367 14851-14856 Chemical denotes water MESH:D014867
368 14881-14886 Chemical denotes water MESH:D014867
369 15057-15065 Chemical denotes hydrogen MESH:D006859
371 16667-16671 Chemical denotes PBSA MESH:C437084
383 16898-16902 Gene denotes TF2b Gene:2959
384 16986-16990 Gene denotes RdRp Gene:43740578
386 17099-17102 Gene denotes Kar Gene:8083
390 16975-16985 Species denotes SARS-CoV-2 Tax:2697049
391 16952-16962 Chemical denotes remdesivir MESH:C000606551
392 17292-17296 Chemical denotes PBSA MESH:C437084
393 18035-18045 Chemical denotes polyphenol MESH:D059808
398 18351-18355 Gene denotes TF2b Gene:2959
399 18339-18343 Chemical denotes EGCG MESH:C045651
400 18366-18376 Chemical denotes remdesivir MESH:C000606551
401 18496-18504 Disease denotes toxicity MESH:D064420
406 19231-19235 Gene denotes TF2b Gene:2959
407 19177-19182 Gene denotes SMILE
408 18863-18869 Chemical denotes lipids MESH:D008055
409 19207-19217 Chemical denotes remdesivir MESH:C000606551
412 19487-19497 Species denotes SARS-CoV-2 Tax:2697049
413 19463-19474 Chemical denotes polyphenols MESH:D059808
420 19566-19570 Gene denotes RdRp Gene:43740578
421 19709-19713 Gene denotes RdRp Gene:43740578
422 19578-19588 Species denotes SARS-CoV-2 Tax:2697049
423 19698-19708 Species denotes SARS-CoV-2 Tax:2697049
424 19539-19549 Chemical denotes polyphenol MESH:D059808
425 19663-19674 Chemical denotes polyphenols MESH:D059808
446 19861-19865 Gene denotes RdRp Gene:43740578
447 20085-20089 Gene denotes RdRp Gene:43740578
448 20234-20238 Gene denotes RdRp Gene:43740578
449 20270-20274 Gene denotes TF2b Gene:2959
450 20474-20478 Gene denotes RdRp Gene:43740578
451 19873-19883 Species denotes SARS-CoV-2 Tax:2697049
452 20074-20084 Species denotes SARS-CoV-2 Tax:2697049
453 20223-20233 Species denotes SARS-CoV-2 Tax:2697049
454 19769-19780 Chemical denotes Polyphenols MESH:D059808
455 19840-19851 Chemical denotes polyphenols MESH:D059808
456 19972-19975 Chemical denotes GTP MESH:D006160
457 19980-19990 Chemical denotes remdesivir MESH:C000606551
458 20097-20108 Chemical denotes polyphenols MESH:D059808
459 20192-20203 Chemical denotes polyphenols MESH:D059808
460 20287-20297 Chemical denotes hesperidin MESH:D006569
461 20299-20303 Chemical denotes EGCG MESH:C045651
462 20305-20314 Chemical denotes myricetin MESH:C040015
463 20319-20332 Chemical denotes quercetagetin MESH:C079163
464 20333-20335 Chemical denotes as MESH:D001151
465 20509-20520 Chemical denotes polyphenols MESH:D059808
472 20973-20977 Gene denotes TF2b Gene:2959
473 20746-20747 Gene denotes S Gene:43740568
474 21590-21600 Chemical denotes Remdesivir MESH:C000606551
475 20881-20885 CellLine denotes S549 CVCL:0023
476 21055-21059 CellLine denotes S549 CVCL:0023
477 21222-21226 CellLine denotes S549 CVCL:0023
481 20740-20744 Gene denotes RdRp Gene:43740578
482 20729-20739 Species denotes SARS-CoV-2 Tax:2697049
483 20705-20716 Chemical denotes polyphenols MESH:D059808
517 21904-21908 Gene denotes TF2b Gene:2959
518 22033-22037 Gene denotes RdRp Gene:43740578
519 22088-22092 Gene denotes RdRp Gene:43740578
520 22225-22229 Gene denotes RdRp Gene:43740578
521 22262-22266 Gene denotes RdRp Gene:43740578
522 22022-22032 Species denotes SARS-CoV-2 Tax:2697049
523 22077-22087 Species denotes SARS-CoV-2 Tax:2697049
524 22214-22224 Species denotes SARS-CoV-2 Tax:2697049
525 22443-22448 Species denotes human Tax:9606
526 22555-22564 Species denotes black tea Tax:4442
527 22855-22872 Species denotes influenza A virus Tax:11320
528 23124-23140 Species denotes SARS coronavirus Tax:694009
529 23202-23219 Species denotes hepatitis C virus Tax:11103
530 22677-22686 Species denotes influenza Tax:11320
531 21832-21842 Chemical denotes remdesivir MESH:C000606551
532 21880-21891 Chemical denotes polyphenols MESH:D059808
533 21915-21925 Chemical denotes hesperidin MESH:D006569
534 21927-21931 Chemical denotes EGCG MESH:C045651
535 21933-21942 Chemical denotes myricetin MESH:C040015
536 21947-21960 Chemical denotes quercetagetin MESH:C079163
537 22155-22166 Chemical denotes polyphenols MESH:D059808
538 22368-22379 Chemical denotes polyphenols MESH:D059808
539 22512-22519 Chemical denotes gallate
540 22565-22576 Chemical denotes polyphenols MESH:D059808
541 22729-22739 Chemical denotes Hesperidin MESH:D006569
542 22902-22906 Chemical denotes EGCG MESH:C045651
543 22926-22936 Chemical denotes polyphenol MESH:D059808
544 23064-23073 Chemical denotes myricetin MESH:C040015
545 23169-23182 Chemical denotes Quercetagetin MESH:C079163
546 23314-23325 Chemical denotes polyphenols MESH:D059808
547 22398-22406 Disease denotes toxicity MESH:D064420
548 22657-22672 Disease denotes hepatitis virus MESH:D006525
549 23417-23437 Disease denotes SARS-CoV-2 infection MESH:C000657245
571 23689-23693 Gene denotes TF2b Gene:2959
572 23761-23765 Gene denotes RdRp Gene:43740578
573 24343-24347 Gene denotes RdRp Gene:43740578
574 24360-24364 Gene denotes RdRp Gene:43740578
575 24371-24375 Gene denotes RdRp Gene:43740578
576 24381-24385 Gene denotes RdRp Gene:43740578
577 24386-24390 Gene denotes TF2b Gene:2959
578 24392-24396 Gene denotes RdRp Gene:43740578
579 24403-24407 Gene denotes RdRp Gene:43740578
580 24419-24423 Gene denotes RdRp Gene:43740578
581 24439-24443 Gene denotes RdRp Gene:43740578
582 24460-24464 Gene denotes RdRp Gene:43740578
583 24541-24545 Gene denotes RdRp Gene:43740578
584 24558-24562 Gene denotes RdRp Gene:43740578
585 23750-23760 Species denotes SARS-CoV-2 Tax:2697049
586 23660-23670 Chemical denotes remdesivir MESH:C000606551
587 23672-23676 Chemical denotes EGCG MESH:C045651
588 23700-23710 Chemical denotes hesperidin MESH:D006569
589 23712-23721 Chemical denotes myricetin MESH:C040015
590 24348-24358 Chemical denotes remdesivir MESH:C000606551
591 23927-23941 Disease denotes backbone atoms
593 24959-24973 Disease denotes backbone atoms
604 25347-25351 Gene denotes RdRp Gene:43740578
605 25408-25412 Gene denotes RdRp Gene:43740578
606 25517-25521 Gene denotes RdRp Gene:43740578
607 25522-25526 Gene denotes TF2b Gene:2959
608 25572-25576 Gene denotes RdRp Gene:43740578
609 25577-25584 Gene denotes TF2a 1 Gene:2957
610 25628-25632 Gene denotes RdRp Gene:43740578
611 25689-25693 Gene denotes RdRp Gene:43740578
612 25753-25757 Gene denotes RdRp Gene:43740578
613 25352-25362 Chemical denotes Remdesivir MESH:C000606551
623 26280-26284 Gene denotes TF2b Gene:2959
624 25918-25928 Chemical denotes remdesivir MESH:C000606551
625 25939-25950 Chemical denotes polyphenols MESH:D059808
626 26134-26138 Chemical denotes EGCG MESH:C045651
627 26140-26149 Chemical denotes myricetin MESH:C040015
628 26151-26164 Chemical denotes quercetagetin MESH:C079163
629 26262-26272 Chemical denotes remdesivir MESH:C000606551
630 26289-26299 Chemical denotes hesperidin MESH:D006569
631 26361-26372 Chemical denotes polyphenols MESH:D059808
652 26722-26726 Gene denotes RdRp Gene:43740578
653 26770-26774 Gene denotes RdRp Gene:43740578
654 26790-26794 Gene denotes RdRp Gene:43740578
655 27387-27391 Gene denotes RdRp Gene:43740578
656 27428-27432 Gene denotes RdRp Gene:43740578
657 27441-27445 Gene denotes RdRp Gene:43740578
658 27530-27534 Gene denotes RdRp Gene:43740578
659 27615-27619 Gene denotes RdRp Gene:43740578
660 26926-26927 Gene denotes N Gene:43740575
661 26651-26661 Chemical denotes remdesivir MESH:C000606551
662 26674-26685 Chemical denotes polyphenols MESH:D059808
663 26775-26785 Chemical denotes remdesivir MESH:C000606551
664 26795-26806 Chemical denotes polyphenols MESH:D059808
665 26969-26975 Chemical denotes Asn150
666 26977-26983 Chemical denotes Asp260
667 26985-26991 Chemical denotes Arg305
668 26993-26999 Chemical denotes Asn360
669 27005-27011 Chemical denotes Phe440
670 27535-27545 Chemical denotes polyphenol MESH:D059808
671 27649-27660 Chemical denotes polyphenols MESH:D059808
685 27971-27975 Gene denotes RdRp Gene:43740578
686 28014-28018 Gene denotes TF2b Gene:2959
687 28291-28295 Gene denotes RdRp Gene:43740578
688 28593-28597 Gene denotes RdRp Gene:43740578
689 28598-28602 Gene denotes TF2b Gene:2959
690 28638-28642 Gene denotes RdRp Gene:43740578
691 27991-28001 Chemical denotes remdesivir MESH:C000606551
692 28003-28007 Chemical denotes EGCG MESH:C045651
693 28026-28035 Chemical denotes myricetin MESH:C040015
694 28037-28050 Chemical denotes quercetagetin MESH:C079163
695 28052-28062 Chemical denotes hesperidin MESH:D006569
696 28296-28306 Chemical denotes polyphenol MESH:D059808
697 28476-28480 Chemical denotes SASA
707 29006-29010 Gene denotes TF2b Gene:2959
708 29168-29172 Gene denotes TF2b Gene:2959
709 28953-28957 Chemical denotes PBSA MESH:C437084
710 28975-28986 Chemical denotes polyphenols MESH:D059808
711 28995-28999 Chemical denotes EGCG MESH:C045651
712 29072-29082 Chemical denotes remdesivir MESH:C000606551
713 29157-29161 Chemical denotes EGCG MESH:C045651
714 29227-29238 Chemical denotes polyphenols MESH:D059808
715 29288-29298 Chemical denotes remdesivir MESH:C000606551
718 29802-29812 Chemical denotes remdesivir MESH:C000606551
719 29822-29833 Chemical denotes polyphenols MESH:D059808
722 30251-30255 Gene denotes TF2b Gene:2959
723 30228-30238 Chemical denotes Remdesivir MESH:C000606551
727 30103-30107 Gene denotes RdRp Gene:43740578
728 30120-30131 Chemical denotes polyphenols MESH:D059808
729 30143-30153 Chemical denotes remdesivir MESH:C000606551
744 31193-31197 Gene denotes RdRp Gene:43740578
745 31210-31214 Gene denotes RdRp Gene:43740578
746 31221-31225 Gene denotes RdRp Gene:43740578
747 31235-31239 Gene denotes RdRp Gene:43740578
748 31240-31244 Gene denotes TF2b Gene:2959
749 31500-31504 Gene denotes RdRp Gene:43740578
750 31516-31520 Gene denotes RdRp Gene:43740578
751 31536-31540 Gene denotes RdRp Gene:43740578
752 31557-31561 Gene denotes RdRp Gene:43740578
753 31639-31643 Gene denotes RdRp Gene:43740578
754 31877-31881 Gene denotes RdRp Gene:43740578
755 31198-31208 Chemical denotes remdesivir MESH:C000606551
756 31839-31850 Chemical denotes polyphenols MESH:D059808
757 31862-31872 Chemical denotes remdesivir MESH:C000606551
777 32057-32061 Gene denotes TF2b Gene:2959
778 32362-32366 Gene denotes RdRp Gene:43740578
779 32484-32488 Gene denotes TF2b Gene:2959
780 32530-32534 Gene denotes RdRp Gene:43740578
781 32672-32676 Gene denotes RdRp Gene:43740578
782 32697-32701 Gene denotes TF2b Gene:2959
783 32857-32861 Gene denotes TF2b Gene:2959
784 32034-32044 Chemical denotes remdesivir MESH:C000606551
785 32046-32050 Chemical denotes EGCG MESH:C045651
786 32156-32165 Chemical denotes myricetin MESH:C040015
787 32167-32180 Chemical denotes quercetagetin MESH:C079163
788 32182-32192 Chemical denotes hesperidin MESH:D006569
789 32249-32259 Chemical denotes remdesivir MESH:C000606551
790 32324-32334 Chemical denotes polyphenol MESH:D059808
791 32389-32393 Chemical denotes EGCG MESH:C045651
792 32477-32481 Chemical denotes EGCG MESH:C045651
793 32491-32501 Chemical denotes remdesivir MESH:C000606551
794 32689-32693 Chemical denotes EGCG MESH:C045651
795 32817-32821 Chemical denotes EGCG MESH:C045651
797 32926-32937 Chemical denotes polyphenols MESH:D059808
802 32999-33003 Gene denotes RdRp Gene:43740578
803 33004-33015 Chemical denotes polyphenols MESH:D059808
804 33020-33030 Chemical denotes remdesivir MESH:C000606551
805 33102-33113 Chemical denotes polyphenols MESH:D059808
810 33576-33580 Gene denotes RdRp Gene:43740578
811 33619-33623 Gene denotes TF2b Gene:2959
812 33596-33606 Chemical denotes remdesivir MESH:C000606551
813 33608-33612 Chemical denotes EGCG MESH:C045651
821 33845-33849 Gene denotes RdRp Gene:43740578
822 34135-34139 Gene denotes RdRp Gene:43740578
823 34417-34421 Gene denotes RdRp Gene:43740578
824 34813-34817 Gene denotes RdRp Gene:43740578
825 34818-34822 Gene denotes TF2b Gene:2959
826 35206-35210 Gene denotes RdRp Gene:43740578
827 33850-33860 Chemical denotes Remdesivir MESH:C000606551
833 33750-33754 Gene denotes TF2b Gene:2959
834 33775-33779 Gene denotes RdRp Gene:43740578
835 33764-33774 Species denotes SARS-CoV-2 Tax:2697049
836 33718-33728 Chemical denotes remdesivir MESH:C000606551
837 33730-33734 Chemical denotes EGCG MESH:C045651
863 35587-35591 Gene denotes RdRp Gene:43740578
864 35778-35782 Gene denotes RdRp Gene:43740578
865 35907-35911 Gene denotes RdRp Gene:43740578
866 35962-35966 Gene denotes RdRp Gene:43740578
867 36019-36023 Gene denotes RdRp Gene:43740578
868 36067-36071 Gene denotes RdRp Gene:43740578
869 36072-36076 Gene denotes TF2b Gene:2959
870 36116-36120 Gene denotes RdRp Gene:43740578
871 35570-35581 Chemical denotes polyphenols MESH:D059808
872 35600-35606 Chemical denotes Asp452
873 35616-35622 Chemical denotes Arg555
874 35624-35630 Chemical denotes Val557
875 35632-35638 Chemical denotes Asp618
876 35640-35646 Chemical denotes Pro620
877 35648-35654 Chemical denotes Lys621
878 35656-35662 Chemical denotes Asp623
879 35664-35670 Chemical denotes Arg624
880 35672-35678 Chemical denotes Asp760
881 35680-35686 Chemical denotes Asp761
882 35692-35698 Chemical denotes Glu811
883 35700-35706 Chemical denotes Asp833
884 35712-35718 Chemical denotes Arg836
885 35817-35828 Chemical denotes polyphenols MESH:D059808
886 35833-35843 Chemical denotes remdesivir MESH:C000606551
887 35912-35922 Chemical denotes remdesivir MESH:C000606551
939 36592-36596 Gene denotes RdRp Gene:43740578
940 36767-36770 Gene denotes Lig Gene:3093
941 36788-36791 Gene denotes Lig Gene:3093
942 36874-36878 Gene denotes RdRp Gene:43740578
943 37056-37059 Gene denotes Lig Gene:3093
944 37155-37158 Gene denotes Lig Gene:3093
945 37176-37179 Gene denotes Lig Gene:3093
946 37408-37412 Gene denotes RdRp Gene:43740578
947 37413-37417 Gene denotes TF2b Gene:2959
948 37486-37489 Gene denotes OE1 Gene:1879
949 37492-37495 Gene denotes Lig Gene:3093
950 37513-37516 Gene denotes Lig Gene:3093
951 37680-37683 Gene denotes Lig Gene:3093
952 37691-37694 Gene denotes Lig Gene:3093
953 37769-37773 Gene denotes RdRp Gene:43740578
954 37851-37854 Gene denotes Lig Gene:3093
955 37873-37876 Gene denotes Lig Gene:3093
956 37507-37510 Gene denotes OE2 Gene:253738
957 36538-36542 Gene denotes RdRp Gene:43740578
958 36293-36301 Chemical denotes hydrogen MESH:D006859
959 36597-36607 Chemical denotes remdesivir MESH:C000606551
960 36638-36646 Chemical denotes hydrogen MESH:D006859
961 36659-36665 Chemical denotes Asp761
962 36667-36673 Chemical denotes Asp760
963 36679-36685 Chemical denotes Ser759
964 36701-36707 Chemical denotes Asp760
965 36742-36752 Chemical denotes remdesivir MESH:C000606551
966 36754-36760 Chemical denotes Asp760
967 36775-36781 Chemical denotes Asp760
968 36879-36883 Chemical denotes EGCG MESH:C045651
969 36890-36896 Chemical denotes Asp618
970 36901-36907 Chemical denotes Asp760
971 37011-37017 Chemical denotes Asp761
972 37100-37106 Chemical denotes Arg836
973 37142-37148 Chemical denotes Arg836
974 37164-37170 Chemical denotes Arg836
975 37240-37246 Chemical denotes Glu811
976 37248-37254 Chemical denotes Thr556
977 37259-37265 Chemical denotes Asp761
978 37419-37425 Chemical denotes Glu811
979 37479-37485 Chemical denotes Glu811
980 37500-37506 Chemical denotes Glu811
981 37631-37637 Chemical denotes Pro832
982 37642-37648 Chemical denotes Tyr877
983 37670-37676 Chemical denotes Pro832
984 37700-37706 Chemical denotes Tyr877
985 37780-37786 Chemical denotes Asp618
986 37838-37844 Chemical denotes Asp618
987 37860-37866 Chemical denotes Asp618
988 37936-37942 Chemical denotes Asp760
989 37964-37970 Chemical denotes Asp760
992 38081-38085 Gene denotes RdRp Gene:43740578
993 38034-38042 Chemical denotes hydrogen MESH:D006859
1020 38361-38365 Gene denotes RdRp Gene:43740578
1021 38421-38424 Gene denotes Lig Gene:3093
1022 38548-38551 Gene denotes Lig Gene:3093
1023 38590-38593 Gene denotes Lig Gene:3093
1024 38718-38721 Gene denotes Lig Gene:3093
1025 38770-38774 Gene denotes RdRp Gene:43740578
1026 38971-38975 Gene denotes RdRp Gene:43740578
1027 38976-38980 Gene denotes TF2b Gene:2959
1028 39055-39058 Gene denotes Lig Gene:3093
1029 39171-39175 Gene denotes RdRp Gene:43740578
1030 39082-39085 Gene denotes OE2 Gene:253738
1031 39050-39053 Gene denotes OE1 Gene:1879
1032 39119-39122 Gene denotes Lig Gene:3093
1033 39087-39090 Gene denotes Lig Gene:3093
1034 38991-38994 Gene denotes Lig Gene:3093
1035 38853-38856 Gene denotes Lig Gene:3093
1036 38686-38689 Gene denotes Lig Gene:3093
1037 38654-38657 Gene denotes Lig Gene:3093
1038 38622-38625 Gene denotes Lig Gene:3093
1039 38505-38508 Gene denotes Lig Gene:3093
1040 38485-38488 Gene denotes Lig Gene:3093
1041 38453-38456 Gene denotes Lig Gene:3093
1042 38389-38392 Gene denotes Lig Gene:3093
1043 38568-38572 Gene denotes RdRp Gene:43740578
1044 38328-38331 Chemical denotes Avg MESH:C088137
1045 38366-38376 Chemical denotes Remdesivir MESH:C000606551
1050 38139-38143 Gene denotes RdRp Gene:43740578
1051 38102-38110 Chemical denotes hydrogen MESH:D006859
1052 38149-38159 Chemical denotes remdesivir MESH:C000606551
1053 38164-38175 Chemical denotes polyphenols MESH:D059808
1098 39731-39735 Gene denotes RdRp Gene:43740578
1099 39997-40001 Gene denotes RdRp Gene:43740578
1100 40395-40399 Gene denotes RdRp Gene:43740578
1101 40400-40404 Gene denotes TF2b Gene:2959
1102 40438-40442 Gene denotes RdRp Gene:43740578
1103 40562-40566 Gene denotes RdRp Gene:43740578
1104 40424-40425 Gene denotes E Gene:43740570
1105 39600-39608 Chemical denotes Hydrogen MESH:D006859
1106 39736-39746 Chemical denotes remdesivir MESH:C000606551
1107 39813-39819 Chemical denotes Lys545
1108 39821-39827 Chemical denotes Ala547
1109 39845-39851 Chemical denotes Val557
1110 39853-39859 Chemical denotes Asp684
1111 39861-39867 Chemical denotes Ser759
1112 39869-39875 Chemical denotes Ser814
1113 39881-39887 Chemical denotes Arg836
1114 39983-39993 Chemical denotes remdesivir MESH:C000606551
1115 40003-40007 Chemical denotes EGCG MESH:C045651
1116 40045-40051 Chemical denotes Lys551
1117 40053-40059 Chemical denotes Ala554
1118 40069-40075 Chemical denotes Arg624
1119 40077-40083 Chemical denotes Pro620
1120 40156-40162 Chemical denotes His439
1121 40164-40170 Chemical denotes Ile548
1122 40172-40178 Chemical denotes Ser814
1123 40180-40186 Chemical denotes Phe812
1124 40188-40194 Chemical denotes Val557
1125 40204-40210 Chemical denotes Tyr619
1126 40215-40221 Chemical denotes Arg555
1127 40321-40327 Chemical denotes Asp833
1128 40329-40335 Chemical denotes His816
1129 40337-40343 Chemical denotes Pro832
1130 40345-40351 Chemical denotes Gln815
1131 40353-40359 Chemical denotes His872
1132 40361-40367 Chemical denotes His810
1133 40372-40378 Chemical denotes Ser434
1134 40485-40491 Chemical denotes Arg555
1135 40493-40499 Chemical denotes Ala554
1136 40504-40510 Chemical denotes Lys551
1137 40521-40524 Chemical denotes TF3 MESH:C585473
1138 40589-40600 Chemical denotes polyphenols MESH:D059808
1139 40634-40642 Chemical denotes hydrogen MESH:D006859
1140 39829-39835 CellLine denotes Ser549 CVCL:0023
1141 40196-40202 CellLine denotes Ser549 CVCL:0023
1154 40694-40698 Gene denotes RdRp Gene:43740578
1155 40735-40739 Gene denotes RdRp Gene:43740578
1156 40771-40775 Gene denotes RdRp Gene:43740578
1157 40785-40789 Gene denotes RdRp Gene:43740578
1158 40790-40794 Gene denotes TF2b Gene:2959
1159 40803-40807 Gene denotes RdRp Gene:43740578
1160 40756-40760 Gene denotes RdRp Gene:43740578
1161 40800-40801 Gene denotes E Gene:43740570
1162 40740-40750 Chemical denotes remdesivir MESH:C000606551
1163 40818-40829 Chemical denotes polyphenols MESH:D059808
1164 40834-40844 Chemical denotes remdesivir MESH:C000606551
1165 40876-40884 Chemical denotes Hydrogen MESH:D006859
1168 41086-41091 Chemical denotes ADMET
1169 41076-41084 Disease denotes toxicity MESH:D064420
1177 41757-41761 Gene denotes TF2b Gene:2959
1178 41417-41422 Chemical denotes ADMET
1179 41732-41743 Chemical denotes polyphenols MESH:D059808
1180 41745-41749 Chemical denotes EGCG MESH:C045651
1181 41830-41834 Chemical denotes PBSA MESH:C437084
1182 41873-41883 Chemical denotes remdesivir MESH:C000606551
1183 41283-41291 Disease denotes toxicity MESH:D064420
1203 42085-42089 Gene denotes TF2b Gene:2959
1204 42268-42272 Gene denotes TF2b Gene:2959
1205 42356-42370 Gene denotes P-glycoprotein Gene:5243
1206 42449-42463 Gene denotes P-glycoprotein Gene:5243
1207 42545-42549 Gene denotes TF2b Gene:2959
1208 42677-42691 Gene denotes P-glycoprotein Gene:5243
1209 42392-42400 Gene denotes membrane Gene:43740571
1210 41885-41890 Species denotes Human Tax:9606
1211 41949-41954 Species denotes human Tax:9606
1212 42213-42218 Species denotes human Tax:9606
1213 42558-42572 Gene denotes P-glycoprotein Gene:5243
1214 42499-42513 Gene denotes P-glycoprotein Gene:5243
1215 42073-42077 Chemical denotes EGCG MESH:C045651
1216 42100-42110 Chemical denotes remdesivir MESH:C000606551
1217 42256-42260 Chemical denotes EGCG MESH:C045651
1218 42283-42293 Chemical denotes remdesivir MESH:C000606551
1219 42419-42429 Chemical denotes remdesivir MESH:C000606551
1220 42481-42485 Chemical denotes EGCG MESH:C045651
1221 41891-41911 Disease denotes colon adenocarcinoma MESH:D003110
1230 42991-42995 Gene denotes TF2b Gene:2959
1231 43215-43219 Gene denotes TF2b Gene:2959
1232 43146-43154 Gene denotes membrane Gene:43740571
1233 42808-42813 Chemical denotes lipid MESH:D008055
1234 42979-42983 Chemical denotes EGCG MESH:C045651
1235 43006-43016 Chemical denotes remdesivir MESH:C000606551
1236 43188-43198 Chemical denotes remdesivir MESH:C000606551
1237 43201-43205 Chemical denotes EGCG MESH:C045651
1246 43838-43844 Gene denotes CYP3A4 Gene:1576
1247 43890-43896 Gene denotes CYP3A4 Gene:1576
1248 43927-43933 Gene denotes CYP3A4 Gene:1576
1249 43808-43818 Chemical denotes remdesivir MESH:C000606551
1250 43917-43921 Chemical denotes EGCG MESH:C045651
1251 44009-44013 Chemical denotes EGCG MESH:C045651
1252 44106-44117 Chemical denotes glucuronide MESH:D020719
1253 44119-44134 Chemical denotes methyl sulfates MESH:C033522
1260 44205-44209 Gene denotes TF2b Gene:2959
1261 44295-44299 Gene denotes OCT2 Gene:5452
1262 44363-44367 Chemical denotes EGCG MESH:C045651
1263 44379-44389 Chemical denotes remdesivir MESH:C000606551
1264 44482-44486 Chemical denotes EGCG MESH:C045651
1265 44456-44462 Disease denotes breath MESH:D004417
1293 44722-44726 Gene denotes TF2b Gene:2959
1294 45026-45030 Gene denotes TF2b Gene:2959
1295 45205-45209 Gene denotes TF2b Gene:2959
1296 45408-45412 Gene denotes TF2b Gene:2959
1297 45518-45522 Gene denotes TF2b Gene:2959
1298 44813-44835 Species denotes Salmonella typhimurium Tax:90371
1299 44990-45012 Species denotes Tetrahymena pyriformis Tax:5908
1300 45078-45083 Species denotes human Tax:9606
1301 45317-45322 Species denotes human Tax:9606
1302 44710-44714 Chemical denotes EGCG MESH:C045651
1303 44743-44753 Chemical denotes remdesivir MESH:C000606551
1304 45014-45018 Chemical denotes EGCG MESH:C045651
1305 45041-45051 Chemical denotes remdesivir MESH:C000606551
1306 45134-45144 Chemical denotes Remdesivir MESH:C000606551
1307 45193-45197 Chemical denotes EGCG MESH:C045651
1308 45345-45355 Chemical denotes remdesivir MESH:C000606551
1309 45385-45395 Chemical denotes polyphenol MESH:D059808
1310 45396-45400 Chemical denotes EGCG MESH:C045651
1311 45450-45460 Chemical denotes Remdesivir MESH:C000606551
1312 45506-45510 Chemical denotes EGCG MESH:C045651
1313 44688-44696 Disease denotes toxicity MESH:D064420
1314 44773-44781 Disease denotes toxicity MESH:D064420
1315 44938-44951 Disease denotes High toxicity MESH:D064420
1316 45170-45184 Disease denotes hepatotoxicity MESH:D056486
1317 45252-45266 Disease denotes hepatotoxicity MESH:D056486
1318 45489-45497 Disease denotes toxicity MESH:D064420
1319 45595-45603 Disease denotes toxicity MESH:D064420
1379 45947-45951 Gene denotes hERG Gene:2078
1380 46339-46343 Gene denotes hERG Gene:2078
1381 46642-46646 Gene denotes TF2b Gene:2959
1382 46732-46736 Gene denotes hERG Gene:2078
1383 47125-47129 Gene denotes hERG Gene:2078
1384 47523-47527 Gene denotes hERG Gene:2078
1385 45772-45773 Gene denotes S Gene:43740568
1386 45911-45916 Species denotes Human Tax:9606
1387 46008-46011 Species denotes rat Tax:10116
1388 46061-46064 Species denotes rat Tax:10116
1389 46174-46187 Species denotes T. pyriformis Tax:5908
1390 46303-46308 Species denotes Human Tax:9606
1391 46400-46403 Species denotes rat Tax:10116
1392 46453-46456 Species denotes rat Tax:10116
1393 46566-46579 Species denotes T. pyriformis Tax:5908
1394 46696-46701 Species denotes Human Tax:9606
1395 46793-46796 Species denotes rat Tax:10116
1396 46846-46849 Species denotes rat Tax:10116
1397 46959-46972 Species denotes T. pyriformis Tax:5908
1398 47089-47094 Species denotes Human Tax:9606
1399 47186-47189 Species denotes rat Tax:10116
1400 47239-47242 Species denotes rat Tax:10116
1401 47352-47365 Species denotes T. pyriformis Tax:5908
1402 47488-47493 Species denotes Human Tax:9606
1403 47584-47587 Species denotes rat Tax:10116
1404 47637-47640 Species denotes rat Tax:10116
1405 47751-47764 Species denotes T. pyriformis Tax:5908
1406 47428-47438 Chemical denotes Remdesivir MESH:C000606551
1407 45796-45804 Disease denotes Toxicity MESH:D064420
1408 45868-45876 Disease denotes toxicity MESH:D064420
1409 46018-46026 Disease denotes toxicity MESH:D064420
1410 46073-46081 Disease denotes toxicity MESH:D064420
1411 46122-46136 Disease denotes Hepatotoxicity MESH:D056486
1412 46188-46196 Disease denotes toxicity MESH:D064420
1413 46224-46232 Disease denotes toxicity MESH:D064420
1414 46260-46268 Disease denotes toxicity MESH:D064420
1415 46410-46418 Disease denotes toxicity MESH:D064420
1416 46465-46473 Disease denotes toxicity MESH:D064420
1417 46514-46528 Disease denotes Hepatotoxicity MESH:D056486
1418 46580-46588 Disease denotes toxicity MESH:D064420
1419 46616-46624 Disease denotes toxicity MESH:D064420
1420 46653-46661 Disease denotes toxicity MESH:D064420
1421 46803-46811 Disease denotes toxicity MESH:D064420
1422 46858-46866 Disease denotes toxicity MESH:D064420
1423 46907-46921 Disease denotes Hepatotoxicity MESH:D056486
1424 46973-46981 Disease denotes toxicity MESH:D064420
1425 47009-47017 Disease denotes toxicity MESH:D064420
1426 47046-47054 Disease denotes toxicity MESH:D064420
1427 47196-47204 Disease denotes toxicity MESH:D064420
1428 47251-47259 Disease denotes toxicity MESH:D064420
1429 47300-47314 Disease denotes Hepatotoxicity MESH:D056486
1430 47366-47374 Disease denotes toxicity MESH:D064420
1431 47402-47410 Disease denotes toxicity MESH:D064420
1432 47445-47453 Disease denotes toxicity MESH:D064420
1433 47594-47602 Disease denotes toxicity MESH:D064420
1434 47649-47657 Disease denotes toxicity MESH:D064420
1435 47698-47712 Disease denotes Hepatotoxicity MESH:D056486
1436 47765-47773 Disease denotes toxicity MESH:D064420
1437 47801-47809 Disease denotes toxicity MESH:D064420
1442 45744-45748 Gene denotes TF2b Gene:2959
1443 45733-45737 Chemical denotes EGCG MESH:C045651
1444 45760-45770 Chemical denotes remdesivir MESH:C000606551
1445 45713-45721 Disease denotes toxicity MESH:D064420
1447 47874-47884 Chemical denotes polyphenol MESH:D059808
1464 48577-48581 Gene denotes TF2b Gene:2959
1465 48712-48716 Gene denotes RdRp Gene:43740578
1466 49013-49017 Gene denotes TF2b Gene:2959
1467 49249-49251 Gene denotes S7 Gene:6264
1468 48780-48790 Species denotes SARS-CoV-2 Tax:2697049
1469 47960-47971 Chemical denotes polyphenols MESH:D059808
1470 48006-48014 Chemical denotes hydrogen MESH:D006859
1471 48183-48194 Chemical denotes polyphenols MESH:D059808
1472 48306-48317 Chemical denotes polyphenols MESH:D059808
1473 48565-48569 Chemical denotes EGCG MESH:C045651
1474 48592-48602 Chemical denotes remdesivir MESH:C000606551
1475 48687-48698 Chemical denotes polyphenols MESH:D059808
1476 48854-48865 Chemical denotes polyphenols MESH:D059808
1477 49001-49005 Chemical denotes EGCG MESH:C045651
1478 49028-49038 Chemical denotes remdesivir MESH:C000606551
1479 49163-49172 Disease denotes ChEMBL ID MESH:C537985
1484 49358-49362 Gene denotes TF2b Gene:2959
1485 49377-49378 Gene denotes E Gene:43740570
1486 49338-49342 Chemical denotes EGCG MESH:C045651
1487 49380-49390 Chemical denotes remdesivir MESH:C000606551
1524 49550-49554 Gene denotes RdRp Gene:43740578
1525 49803-49807 Gene denotes RdRp Gene:43740578
1526 50023-50027 Gene denotes RdRp Gene:43740578
1527 50034-50038 Gene denotes RdRp Gene:43740578
1528 50044-50048 Gene denotes RdRp Gene:43740578
1529 50055-50059 Gene denotes RdRp Gene:43740578
1530 50060-50064 Gene denotes TF2b Gene:2959
1531 50066-50070 Gene denotes RdRp Gene:43740578
1532 50076-50080 Gene denotes RdRp Gene:43740578
1533 50093-50097 Gene denotes RdRp Gene:43740578
1534 50109-50113 Gene denotes RdRp Gene:43740578
1535 50140-50144 Gene denotes RdRp Gene:43740578
1536 50694-50698 Gene denotes TF2b Gene:2959
1537 50798-50802 Gene denotes RdRp Gene:43740578
1538 51000-51004 Gene denotes TF2b Gene:2959
1539 51053-51057 Gene denotes RdRp Gene:43740578
1540 50367-50371 Gene denotes RdRp Gene:43740578
1541 51303-51307 Gene denotes RdRp Gene:43740578
1542 49792-49802 Species denotes SARS-CoV-2 Tax:2697049
1543 50356-50366 Species denotes SARS-CoV-2 Tax:2697049
1544 50787-50797 Species denotes SARS-CoV-2 Tax:2697049
1545 51065-51075 Species denotes SARS-CoV-2 Tax:2697049
1546 51292-51302 Species denotes SARS-CoV-2 Tax:2697049
1547 49723-49734 Chemical denotes polyphenols MESH:D059808
1548 49870-49881 Chemical denotes polyphenols MESH:D059808
1549 50145-50155 Chemical denotes remdesivir MESH:C000606551
1550 50390-50401 Chemical denotes polyphenols MESH:D059808
1551 50658-50662 Chemical denotes PBSA MESH:C437084
1552 50682-50686 Chemical denotes EGCG MESH:C045651
1553 50764-50774 Chemical denotes remdesivir MESH:C000606551
1554 50835-50839 Chemical denotes ADME
1555 50988-50992 Chemical denotes EGCG MESH:C045651
1556 51240-51251 Chemical denotes polyphenols MESH:D059808
1557 49600-49620 Disease denotes SARS-CoV-2 infection MESH:C000657245
1558 50852-50860 Disease denotes toxicity MESH:D064420
1559 51413-51433 Disease denotes SARS-CoV-2 infection MESH:C000657245

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 1328-1331 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T2 8151-8154 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T3 10301-10304 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T4 16888-16891 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T5 20276-20279 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T6 21069-21072 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T7 21893-21896 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T8 22500-22503 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T9 23678-23681 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T10 24465-24468 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T11 25819-25822 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T12 26166-26169 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T13 28067-28070 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T14 31562-31565 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T15 32197-32200 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049
T16 50039-50042 GlycoEpitope denotes TF1 http://www.glycoepitope.jp/epitopes/AN0049

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-155 Sentence denotes Plant-derived natural polyphenols as potential antiviral drugs against SARS-CoV-2 via RNA‐dependent RNA polymerase (RdRp) inhibition: an in-silico analysis
T2 156-158 Sentence denotes S.
T3 159-171 Sentence denotes Singh et al.
T4 172-218 Sentence denotes Journal of Biomolecular Structure and Dynamics
T5 220-228 Sentence denotes Abstract
T6 229-237 Sentence denotes Abstract
T7 238-414 Sentence denotes The sudden outburst of Coronavirus disease (COVID-19) caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) poses a massive threat to global public health.
T8 415-482 Sentence denotes Currently, no therapeutic drug or vaccine exists to treat COVID-19.
T9 483-609 Sentence denotes Due to the time taking process of new drug development, drug repurposing might be the only viable solution to tackle COVID-19.
T10 610-741 Sentence denotes RNA‐dependent RNA polymerase (RdRp) catalyzes SARS-CoV-2 RNA replication and hence, is an obvious target for antiviral drug design.
T11 742-841 Sentence denotes Interestingly, several plant-derived polyphenols effectively inhibit the RdRp of other RNA viruses.
T12 842-981 Sentence denotes More importantly, polyphenols have been used as dietary supplementations for a long time and played beneficial roles in immune homeostasis.
T13 982-1100 Sentence denotes We were curious to study the binding of polyphenols with SARS-CoV-2 RdRp and assess their potential to treat COVID-19.
T14 1101-1215 Sentence denotes Herein, we made a library of polyphenols that have shown substantial therapeutic effects against various diseases.
T15 1216-1278 Sentence denotes They were successfully docked in the catalytic pocket of RdRp.
T16 1279-1511 Sentence denotes The investigation reveals that EGCG, theaflavin (TF1), theaflavin-3’-O-gallate (TF2a), theaflavin-3’-gallate (TF2b), theaflavin 3,3'-digallate (TF3), hesperidin, quercetagetin, and myricetin strongly bind to the active site of RdRp.
T17 1512-1649 Sentence denotes Further, a 150-ns molecular dynamic simulation revealed that EGCG, TF2a, TF2b, TF3 result in highly stable bound conformations with RdRp.
T18 1650-1755 Sentence denotes The binding free energy components calculated by the MM-PBSA also confirm the stability of the complexes.
T19 1756-1878 Sentence denotes We also performed a detailed analysis of ADME prediction, toxicity prediction, and target analysis for their druggability.
T20 1879-2000 Sentence denotes Overall, our results suggest that EGCG, TF2a, TF2b, TF3 can inhibit RdRp and represent an effective therapy for COVID-19.
T21 2001-2029 Sentence denotes Communicated by Ramaswamy H.
T22 2030-2035 Sentence denotes Sarma
T23 2037-2039 Sentence denotes 1.
T24 2041-2053 Sentence denotes Introduction
T25 2054-2149 Sentence denotes An outbreak of Coronavirus disease (COVID-19) has caused a pandemic situation across the globe.
T26 2150-2347 Sentence denotes Although the outburst was first observed at Wuhan city in China, at present more than 200 countries and territories around the world have witnessed the COVID-19 fatalities affecting all age groups.
T27 2348-2499 Sentence denotes As of July 03, 2020, more than 11 million people have been affected by the disease, with a fatality of 5,25,410 across the globe as per the WHO report.
T28 2500-2586 Sentence denotes Unfortunately, there is no clinically approved drug or vaccine for COVID-19 as of now.
T29 2587-2965 Sentence denotes The disease is caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), a member of the Coronaviridae family of viruses and it belongs to the same family Betacoronaviruses, like Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome Coronavirus (MERS-CoV) (Chan et al., 2015; Elfiky & Azzam, 2020; Ibrahim et al., 2020).
T30 2966-3096 Sentence denotes The symptoms of SARS-CoV-2 infection include fever, dry cough, shortness of breath, runny nose, and sore throat (Wu et al., 2020).
T31 3097-3308 Sentence denotes SARS-CoV-2 is a positive-sense single-stranded RNA virus, and its genome is around 29.7 kB long with twelve putative open reading frames (ORFs) that encode different viral structural and non-structural proteins.
T32 3309-3567 Sentence denotes There are four structural proteins in SARS-CoV-2, namely spike (S), envelope (E), membrane (M), and nucleocapsid (N), and all of them can potentially serve as an antigen for neutralizing antibody preparation as potential therapeutics (Boopathi et al., 2020).
T33 3568-3788 Sentence denotes Another potential drug target for SARS-CoV-2 is RNA‐dependent RNA polymerase (RdRp) (Figure 1), which is a key component of the replication machinery of the virus to make multiple copies of the RNA genome (Elfiky 2020c).
T34 3789-3842 Sentence denotes RdRp in various coronaviruses are remarkably similar.
T35 3843-3935 Sentence denotes For example, the RdRp of SARS-CoV exhibits ∼97% sequence similarity with that of SARS-CoV-2.
T36 3936-4273 Sentence denotes More importantly, there is no human polymerase counterpart that resembles the sequence/structural homology with RdRp from coronaviruses, and hence, the development of RdRp inhibitors could be a potential therapeutic strategy without risk of crosstalk with human polymerases (Borgio et al., 2020; Subissi et al., 2014; Zhai et al., 2005).
T37 4274-4654 Sentence denotes Very recently, Yin et al. reported the crystal structure RdRp of SARS-CoV-2 complexed with an antiviral drug, Remdesivir highlighting how the template-primer RNA is recognized by the polymerase enzyme and the chain elongation is inhibited by Remdesivir providing a basis for developing a wide range of effective inhibitors to overcome from SARS-CoV-2 infection (Yin et al., 2020).
T38 4655-4848 Sentence denotes RdRp has been found to be an effective drug target for several other RNA viruses, spanning from the hepatitis C virus, zika virus to coronaviruses (Elfiky, 2017, 2019; Ganesan & Barakat, 2017).
T39 4849-5013 Sentence denotes The active site of RdRp is highly conserved, and the catalytic domains contain two consecutive aspartate residues in a beta-turn joining β15 and β16 (Elfiky 2020c).
T40 5014-5249 Sentence denotes The general structure of RdRp consists of 7 motifs (A to G) among them inner channel of catalytic sites represented by motif A to C, and they play a crucial role during the nucleotide addition cycle (Jia & Gong, 2019; Wu & Gong, 2018).
T41 5250-5259 Sentence denotes Figure 1.
T42 5261-5336 Sentence denotes The 3-dimensional crystal structure of RNA‐dependent RNA polymerase (RdRp).
T43 5337-5700 Sentence denotes Epidemiological studies repetitively suggested that consumption of bioactive compounds (e.g. vitamins, phytochemicals, polyphenols, flavonoids, flavonols, and carotenoids etc.) has beneficial activity on human health and could minimize the risk of various diseases starting from cancers to different viral infections (Khan et al., 2020; Szajdek & Borowska, 2008).
T44 5701-5883 Sentence denotes Traditional natural compounds have been consumed since ancient times as they exhibit less toxicity, low-cost availability, minimum side-effects and are rich in therapeutic resources.
T45 5884-6169 Sentence denotes Some of the previous findings also suggest that naturally occurring compounds possess a wide range of antiviral properties against RNA viruses, including polio-virus type 1, parainfluenza virus type 3, and respiratory syncytial virus by inhibiting their replication (Lin et al., 2014).
T46 6170-6466 Sentence denotes In that context, Ahmed-Belkacem et al. have screened more than forty potent natural flavonoids for their polymerase inhibition activity using HCV-NS5 strain and among the different flavonoids, quercetagetin showed strong HCV replication inhibitory activity in vitro (Ahmed-Belkacem et al., 2014).
T47 6467-6641 Sentence denotes Previously, song et al. reported that green tea catechins, by disrupting the membrane of the influenza virus, inhibited neuraminidase in the crude system (Song et al., 2005).
T48 6642-6796 Sentence denotes On a separate report, Takashi et al. reported that EGCG, a green tea polyphenol can inhibit the endonuclease activity of influenza A virus RNA polymerase.
T49 6797-6942 Sentence denotes EGCG is also reported to interfere with viral replication via modulating the cellular redox environment (Ho et al., 2009; Kuzuhara et al., 2009).
T50 6943-7149 Sentence denotes Therefore, the existing scientific evidence strongly suggests that natural flavonoids/polyphenol can act against SARS-CoV-2 (Aanouz et al., 2020; Elfiky 2020b; Elmezayen et al., 2020; Enmozhi et al., 2020).
T51 7150-7491 Sentence denotes Because of the time-consuming process of new synthetic/semi-synthetic drug development, drug repurposing of phytomolecules is an ideal alternative in this urgent situation as the latter process is economical and scalable in a very short period of time (Adeoye et al., 2020; Islam et al., 2020; Muralidharan et al., 2020; Sinha et al., 2020).
T52 7492-7654 Sentence denotes Hence, a comprehensive understanding of their binding to SARS-CoV-2 RdRp can yield interesting findings that can further be capitalized to develop COVID-19 drugs.
T53 7655-7807 Sentence denotes Nevertheless, the apparent lack of cytotoxicity of polyphenols at even significantly high concentrations makes them potential antiviral drug candidates.
T54 7808-7935 Sentence denotes In the present study, we selected a hundred natural polyphenols to assess their potential to act as SARS-CoV-2 RdRp inhibitors.
T55 7936-8106 Sentence denotes The selected library was then explored to evaluate the binding affinity of individual polyphenols towards RdRp of the SARS-CoV-2 by molecular docking using AutoDock vina.
T56 8107-8425 Sentence denotes Among the selected polyphenols, theaflavin (TF1), theaflavin-3′-O-gallate (TF2a), theaflavin-3′-gallate (TF2b), theaflavin 3,3′-digallate (TF3), hesperidin, EGCG, myricetin, and quercetagetin were found to be docked in the active site of RdRp of the SARS-CoV-2 with a highly favourable affinity for the binding pocket.
T57 8426-8587 Sentence denotes Further to get a better understanding of the dynamics of the complexes, we performed a 150-nanoseconds molecular dynamic simulation with those eight polyphenols.
T58 8588-8654 Sentence denotes The binding free energy components were calculated by the MM-PBSA.
T59 8655-8775 Sentence denotes Remdesivir (Hendaus, 2020) and GTP (a physiological nucleotide) were taken as positive controls to validate our results.
T60 8777-8779 Sentence denotes 2.
T61 8781-8802 Sentence denotes Materials and methods
T62 8804-8808 Sentence denotes 2.1.
T63 8810-8835 Sentence denotes Molecular docking studies
T64 8837-8843 Sentence denotes 2.1.1.
T65 8845-8865 Sentence denotes Protein preparations
T66 8866-8915 Sentence denotes The crystal structure of SARS-CoV-2 RdRp (PDB ID:
T67 8916-9018 Sentence denotes 6M71) (Yan et al., 2020) was retrieved from the protein databank (www.rcsb.org) (Berman et al., 2000).
T68 9019-9181 Sentence denotes The crystal structure was prepared individually by adding hydrogen atoms and computing the Gasteiger charge using the AutoDock v4.2 program (Morris et al., 2009).
T69 9182-9269 Sentence denotes Subsequently, the file was saved as .pdbqt format in preparation for molecular docking.
T70 9270-9413 Sentence denotes Schematic representation of the work-flow for selecting potential natural polyphenolic inhibitors for the SARS-CoV-2 RdRp is shown in Figure 2.
T71 9414-9423 Sentence denotes Figure 2.
T72 9425-9535 Sentence denotes Flow chart of the methodology for shortlisting the best natural polyphenolic inhibitor of the SARS-CoV-2 RdRp.
T73 9537-9543 Sentence denotes 2.1.2.
T74 9545-9564 Sentence denotes Ligand preparations
T75 9565-9777 Sentence denotes The SDF structures of GTP, remdesivir, and selected hundred polyphenols (see Table S1 in Supplementary Information) were retrieved from the PubChem database (https://pubchem.ncbi.nlm.nih.gov/) (Kim et al., 2019).
T76 9778-9935 Sentence denotes The compounds were converted into PDB format, and conformational energies of all the compounds were minimized by using UCSF Chimera (Pettersen et al., 2004).
T77 9936-9944 Sentence denotes Table 1.
T78 9946-10092 Sentence denotes Binding energy (kcal/mol) of the natural polyphenols along with the control compounds (GTP and remdesivir) against RdRp of the SARS-CoV-2 (PDB ID:
T79 10093-10126 Sentence denotes 6M71) by molecular docking study.
T80 10127-10129 Sentence denotes S.
T81 10130-10133 Sentence denotes No.
T82 10135-10179 Sentence denotes Compound Name Binding energy (kcal/mol) S.
T83 10180-10183 Sentence denotes No.
T84 10185-10225 Sentence denotes Compound Name Binding energy (kcal/mol)
T85 10226-10260 Sentence denotes 1 TF3 −9.9 52 Cyanidin −6.3
T86 10261-10296 Sentence denotes 2 TF2b −9.6 53 Daidzein −6.3
T87 10297-10332 Sentence denotes 3 TF1 −9.6 54 Glycitein −6.3
T88 10333-10367 Sentence denotes 4 TF2a −9.3 55 Wogonin −6.3
T89 10368-10410 Sentence denotes 5 Hesperidin −8.8 56 Phloretin −6.3
T90 10411-10446 Sentence denotes 6 EGCG −7.3 57 Catechin −6.2
T91 10447-10490 Sentence denotes 7 Myricetin −7.2 58 Urolithin B −6.2
T92 10491-10537 Sentence denotes 8 Quercetagetin −7.0 59 Angolensin −6.2
T93 10538-10578 Sentence denotes 9 Quercetin −6.9 60 Pinosylvin −6.2
T94 10579-10621 Sentence denotes 10 Curcumin −6.9 61 Formononetin −6.2
T95 10622-10674 Sentence denotes 11 Dihydrorobinetin −6.8 62 Liquiritigenin −6.2
T96 10675-10713 Sentence denotes 12 Peonidin −6.8 63 Prunetin −6.2
T97 10714-10752 Sentence denotes 13 Fisetin −6.8 64 Alpinetin −6.2
T98 10753-10795 Sentence denotes 14 Robinetin −6.7 65 Biochanin A −6.2
T99 10796-10846 Sentence denotes 15 5-Deoxygalangin −6.7 66 Rhapontigenin −6.1
T100 10847-10888 Sentence denotes 16 Kaempferol −6.7 67 Genistein −6.1
T101 10889-10930 Sentence denotes 17 Scutellarein −6.7 68 Chrysin −6.1
T102 10931-10984 Sentence denotes 18 (-)-Epicatechin −6.7 69 6-Hydroxyflavone −6.1
T103 10985-11020 Sentence denotes 19 Purpurin −6.7 70 Equol −6.1
T104 11021-11066 Sentence denotes 20 Isorhamnetin −6.7 71 Piceatannol −6.1
T105 11067-11113 Sentence denotes 21 Tricetin −6.6 72 Isorhapontigenin −6.0
T106 11114-11157 Sentence denotes 22 Gossypetin −6.6 73 Resveratrol −5.8
T107 11158-11200 Sentence denotes 23 Norathyriol −6.6 74 Danshensu −5.7
T108 11201-11240 Sentence denotes 24 Coumestrol −6.6 75 Eugenin −5.6
T109 11241-11289 Sentence denotes 25 Isosakuranetin −6.6 76 Sinapic acid −5.5
T110 11290-11341 Sentence denotes 26 Pectolinarigenin −6.6 77 Pterostilbene −5.5
T111 11342-11386 Sentence denotes 27 Tangeritin −6.6 78 Ferulic acid −5.4
T112 11387-11430 Sentence denotes 28 Nobiletin −6.6 79 Caffeic acid −5.4
T113 11431-11478 Sentence denotes 29 Pratensein −6.6 80 Isoferulic acid −5.4
T114 11479-11530 Sentence denotes 30 Hispidulin −6.6 81 Dihydrocaffeic acid −5.4
T115 11531-11575 Sentence denotes 31 Baicalein −6.5 82 Gentisic acid −5.3
T116 11576-11616 Sentence denotes 32 Apigenin −6.5 83 Pyrogallol −5.3
T117 11617-11666 Sentence denotes 33 Morin −6.5 84 4-Hydroxycinnamic acid −5.2
T118 11667-11715 Sentence denotes 34 Urolithin A −6.5 85 Resacetophenone −5.2
T119 11716-11761 Sentence denotes 35 Acacetin −6.5 86 Salicyclic acid −5.1
T120 11762-11809 Sentence denotes 36 Pelargonidin −6.5 87 Syringic acid −5.1
T121 11810-11860 Sentence denotes 37 Irilone −6.5 88 2-Hydroxybenzoic acid −5.1
T122 11861-11904 Sentence denotes 38 Naringenin −6.5 89 Gallic acid −5.0
T123 11905-11959 Sentence denotes 39 Pinocembrin −6.5 90 3-Hydroxybenzoic acid −5.0
T124 11960-12014 Sentence denotes 40 Kaempferide −6.5 91 4-Hydroxybenzoic acid −5.0
T125 12015-12053 Sentence denotes 41 Malvidin −6.5 92 Vanillin −5.0
T126 12054-12099 Sentence denotes 42 Luteolin −6.4 93 p-Coumeric acid −4.9
T127 12100-12144 Sentence denotes 43 Dalbergin −6.4 94 Vanillic acid −4.8
T128 12145-12180 Sentence denotes 44 Butein −6.4 95 Paeonol −4.8
T129 12181-12232 Sentence denotes 45 Biochanin A (1-) −6.4 96 Cinnamic acid −4.7
T130 12233-12280 Sentence denotes 46 Fustin −6.4 97 Protocatechuic acid −4.6
T131 12281-12332 Sentence denotes 47 5-Hydroxyflavone −6.4 98 4-Ethylphenol −4.5
T132 12333-12374 Sentence denotes 48 Pinostrobin −6.4 99 Catechol −4.5
T133 12375-12416 Sentence denotes 49 Pinobanksin −6.4 100 Tyrosol −4.5
T134 12417-12455 Sentence denotes 50 Datiscetin −6.3 101 GTP −7.9
T135 12456-12499 Sentence denotes 51 Galangin −6.3 102 Remdesivir −7.7
T136 12501-12507 Sentence denotes 2.1.3.
T137 12509-12544 Sentence denotes Docking studies using AutoDock Vina
T138 12545-12727 Sentence denotes The energy-minimized structure of all the natural polyphenols, remdesivir, and GTP were docked with the receptor (RdRp of SARS-CoV-2) using AutoDock Vina 1.1.2 (Trott & Olson, 2010).
T139 12728-12916 Sentence denotes The ligand files were further saved in PDBQT file format, a modified PDB format containing atomic charges, atom type definitions for ligands, and topological information (rotatable bonds).
T140 12917-13040 Sentence denotes A grid box (30 Å × 30 Å × 30 Å) centered at (121, 120, 125) Å for the SARS-CoV-2 RdRp, was used in the docking experiments.
T141 13041-13130 Sentence denotes After the receptor-ligand preparation, docking runs were started from the command prompt.
T142 13131-13255 Sentence denotes The lowest binding energy and best-docked conformation were considered as the ligand molecule with maximum binding affinity.
T143 13257-13263 Sentence denotes 2.1.4.
T144 13265-13292 Sentence denotes Protein-ligand interactions
T145 13293-13476 Sentence denotes LigPlot+ was used to investigate protein-ligand interactions for a given .pdb file containing the docked conformation and also the final simulated conformation (Wallace et al., 1995).
T146 13477-13572 Sentence denotes The LigPlot+ program self-generated schematic 2D representations of protein-ligand interaction.
T147 13573-13726 Sentence denotes The output file represents the intermolecular interactions and their strengths, including hydrogen bonds, hydrophobic contacts, and atom accessibilities.
T148 13727-13859 Sentence denotes H-bonds are shown in green dotted lines, whereas residues involved in hydrophobic interaction are represented in the red semicircle.
T149 13861-13865 Sentence denotes 2.2.
T150 13867-13897 Sentence denotes Molecular dynamics simulations
T151 13898-14174 Sentence denotes All-atom molecular dynamics (MD) simulations were performed on the best eight selected plant-derived natural polyphenols obtained from the molecular docking study along with remdesivir, a well-known RdRp inhibitor, for studying thermodynamic stability of the docked structure.
T152 14175-14220 Sentence denotes The pmemd.cuda module in AMBER18 (Case et al.
T153 14221-14342 Sentence denotes 2018) was used for conducting MD simulations, and all simulations were performed utilizing the graphics card, RTX 2080Ti.
T154 14343-14486 Sentence denotes We adopted the same protocol that was used in our earlier studies (Jonniya et al., 2019; Sk, Roy, Jonniya, et al., 2020; Sk, Roy, & Kar, 2020).
T155 14487-14632 Sentence denotes The receptor and small molecules were described by the Amber ff14SB (Maier et al., 2015) and GAFF2 (Wang et al., 2004) force field, respectively.
T156 14633-14766 Sentence denotes Ligands were assigned the AM1-BCC (Jakalian et al., 2002) atomic charges calculated using the antechamber (Wang et al., 2001) module.
T157 14767-14932 Sentence denotes The complexes were then solvated using an explicit TIP3P (Price & Brooks III, 2004) water model, and nearly 38124 water molecules were needed to solvate each system.
T158 14933-15028 Sentence denotes Subsequently, all solvated systems were neutralized by adding an appropriate number of Na+ ion.
T159 15029-15137 Sentence denotes All bond lengths, including hydrogen atoms, were constrained by the SHAKE algorithm (Kräutler et al., 2001).
T160 15138-15180 Sentence denotes This allows the usage of a 2 fs time-step.
T161 15181-15345 Sentence denotes The non-bonded cut-off was set to 8 Å and the long range electrostatic interactions were evaluated using the particle-mesh Ewald (PME) (Darden et al., 1993) method.
T162 15346-15473 Sentence denotes The temperature was kept at 300 K using the Langevin thermostat (Loncharich et al., 1992) with a collision frequency of 2 ps−1.
T163 15474-15579 Sentence denotes The system pressure was controlled by Berendsen’s Barostat (Berendsen et al., 1984) and fixed at 1.0 bar.
T164 15580-15630 Sentence denotes We used a time-step of 2.0 fs for all simulations.
T165 15631-15675 Sentence denotes Briefly, we used two stages of minimization.
T166 15676-15950 Sentence denotes Firstly, each complex was optimized by 500 steps of steepest descent followed by another 500 steps of conjugate gradient minimization, keeping all atoms of the complex restrained to their initial coordinate with a weak harmonic potential (force constant 2.0 kcal mol−1 Å−2).
T167 15951-16171 Sentence denotes The second stage of minimization was carried out without any restraints by performing 100 steps of steepest descent, followed by another 900 steps of conjugate gradient minimization to remove any residual steric clashes.
T168 16172-16328 Sentence denotes Subsequently, all systems were gradually heated from 0 K to 300 K at the NVT ensemble with a force constant of 2.0 kcal mol−1Å−2 acting on all solute atoms.
T169 16329-16403 Sentence denotes Next, 1.0 ns equilibration MD phase was carried out without any restraint.
T170 16404-16497 Sentence denotes Finally, we performed 150 ns production simulations for all four systems at the NPT ensemble.
T171 16498-16679 Sentence denotes Overall, we accumulated 15000 conformations for each simulation, and we used 500 snapshots from the last 50 ns trajectories for binding affinity estimation using the MM-PBSA scheme.
T172 16680-16786 Sentence denotes The trajectory analysis was done by the AmberTools19 CPPTRAJ (Roe & Cheatham III, 2013) module of Amber18.
T173 16788-16792 Sentence denotes 2.3.
T174 16794-16857 Sentence denotes Molecular mechanics Poisson-Boltzmann surface area calculations
T175 16858-17284 Sentence denotes The binding affinity of EGCG, TF1, TF3, TF2b, TF2a, hesperidin, myricetin, quercetagetin, and remdesivir against the SARS-CoV-2 RdRp, were calculated by the molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) methodology (Jonniya & Kar, 2020; Kar, Seel, et al., 2007; Kar, Wei, et al., 2007; Kar et al., 2011; 2013; Kar & Knecht, 2012a, 2012b, 2012c, 2012d; Kollman et al., 2000; Roy et al., 2020; Wang et al., 2006).
T176 17285-17566 Sentence denotes The MM-PBSA scheme can briefly be described as follows: (1) ΔGbind=ΔH−TΔS≈ΔEMM+ΔGsolv−TΔS (2) ΔEMM=ΔEinternal+ΔEelec+ΔEvdW (3) ΔGsolv=ΔGpol+ΔGnp where ΔEMM, ΔGsolv, TΔS are the changes in molecular mechanical energy, solvation free energy, and conformational entropy, respectively.
T177 17567-17832 Sentence denotes Further, molecular mechanical energy is composed of ΔEinternal (bond, dihedral, and angle), ΔEelec (electrostatic) and ΔEvdW (van der Waals) and the change in desolvation free energy is composed of polar solvation (ΔGpol) and non-polar solvation free energy (ΔGnp).
T178 17833-17918 Sentence denotes The polar solvation free energy, ΔGpol, was calculated by the pbsa module of AMBER18.
T179 17919-18007 Sentence denotes Due to the high computational cost, we neglect the configurational entropy calculations.
T180 18008-18276 Sentence denotes Further, to understand the polyphenol-protein interaction more closely, the interaction energy was decomposed into the contributions from each residue of the protein by using the molecular mechanics generalized Born surface area (MM-GBSA) scheme (Gohlke et al., 2003).
T181 18278-18282 Sentence denotes 2.4.
T182 18284-18297 Sentence denotes ADMET studies
T183 18298-18421 Sentence denotes The in-silico pharmacological studies of EGCG, TF2a, TF2b, TF3, and remdesivir were predicted based on their ADMET profile.
T184 18422-18611 Sentence denotes The ADMET studies (absorption, distribution, metabolism, elimination, and toxicity) were predicted using the pkCSM tool (http://biosig.unimelb.edu.au/pkcsm/prediction) (Pires et al., 2015).
T185 18612-18758 Sentence denotes The canonical SMILE molecular structures of the above-mentioned compounds were retrieved from the PubChem database (www.pubchem.ncbi.nlm.nih.gov).
T186 18760-18764 Sentence denotes 2.5.
T187 18766-18793 Sentence denotes Molecular target prediction
T188 18794-18870 Sentence denotes Natural compounds interact with a large number of proteins, enzymes, lipids.
T189 18871-18971 Sentence denotes This interaction plays a crucial role in elucidating the molecular mechanism of the small molecules.
T190 18972-19067 Sentence denotes So, it is important to identify the molecular targets for new molecules (Gfeller et al., 2014).
T191 19068-19310 Sentence denotes Swiss Target Prediction website (http://www.swisstargetprediction.ch/index.php) was logged on, and canonical SMILE molecular structures of remdesivir, EGCG, TF2a, TF2b, and TF3 were entered in the search bar option, and results were analyzed.
T192 19312-19314 Sentence denotes 3.
T193 19316-19338 Sentence denotes Results and discussion
T194 19340-19344 Sentence denotes 3.1.
T195 19346-19372 Sentence denotes Molecular docking analysis
T196 19374-19380 Sentence denotes 3.1.1.
T197 19382-19502 Sentence denotes The binding mode analysis and predicted binding affinity calculations of natural polyphenols against the SARS-CoV-2 RdRp
T198 19503-19597 Sentence denotes Herein, we investigated our natural polyphenol library against RdRp of the SARS-CoV-2 (PDB ID:
T199 19598-19625 Sentence denotes 6M71) by molecular docking.
T200 19626-19768 Sentence denotes The best conformation of the natural polyphenols was docked against the SARS-CoV-2 RdRp, and resulting binding energies are listed in Table 1.
T201 19769-19952 Sentence denotes Polyphenols exhibiting binding energy of −7.0 kcal/mol or lower (eight polyphenols) against RdRp of the SARS-CoV-2 are listed in Table 2 along with the ligand-amino acid interactions.
T202 19953-20090 Sentence denotes Control compounds, GTP and remdesivir, exhibited the binding energy of −7.9 and −7.7 kcal/mol, respectively, against the SARS-CoV-2 RdRp.
T203 20091-20434 Sentence denotes Eight polyphenols displayed significantly higher binding affinity among the selected hundred natural polyphenols docked against the SARS-CoV-2 RdRp, with binding energies of TF3, TF2b, TF1, TF2a, hesperidin, EGCG, myricetin and quercetagetin as −9.9, −9.6, −9.6, −9.3, −8.8, −7.3, −7.2 and −7.0 kcal/mol, respectively (highlighted in Table 1).
T204 20435-20634 Sentence denotes Further, 2D LigPlot+ representation of RdRp and the above-mentioned eight polyphenols reveal the stable network of molecular interactions (see Table 2 and Figure S1 in the Supplementary Information).
T205 20635-20643 Sentence denotes Table 2.
T206 20645-20745 Sentence denotes Ligand-amino acid interactions of top eight scoring natural polyphenols against the SARS-CoV-2 RdRp.
T207 20746-20748 Sentence denotes S.
T208 20749-20752 Sentence denotes No.
T209 20754-20850 Sentence denotes Compound name Binding energy (kcal/mol) No. of non-covalent interactions Involved amino acids
T210 20851-20969 Sentence denotes 1 TF3 −9.9 17 W617, K551, S549, D623, R836, S814, E811, F812, C813, D761, D618, S759, Y619, C622, R553, K621, D760
T211 20970-21065 Sentence denotes 2 TF2b −9.6 13 K551, Y619, D760, K798, W617, W800, D761, F812, C813, E811, D618, S549, A550
T212 21066-21154 Sentence denotes 3 TF1 −9.6 12 W617, D761, D760, Y619, R553, K621, P620, F793, D164, S795, K798, D618
T213 21155-21256 Sentence denotes 4 TF2a −9.3 14 C813, F812, D761, D760, D618, K798, K551, A550, S549, K621, Y619, W800, W617, E811
T214 21257-21358 Sentence denotes 5 Hesperidin −8.8 13 Y619, D618, K798, S795, M794, P793, D164, V166, P620, K621, D623, R555, Y455
T215 21359-21429 Sentence denotes 6 EGCG −7.3 9 D623, Y619, K621, S795, C622, D618, M794, P620, K798
T216 21430-21512 Sentence denotes 7 Myricetin −7.2 10 W617, W800, D760, E811, K798, D618, Y619, C622, D761, F812
T217 21513-21586 Sentence denotes 8 Quercetagetin −7.0 8 R553, K545, K621, D623, C622, D760, P620, Y619
T218 21587-21698 Sentence denotes 9 Remdesivir (Control) −7.7 13 R553, K621, C622, D760, E811, W800, K798, P620, Y455, R624, Y619, D618, D761
T219 21699-22038 Sentence denotes 10 GTP (Control) −7.9 15 R624, T556, D623, D760, Y619, C622, K621, D452, A554, R553, Y455, R555, D761, D618, P620 In addition to remdesivir, here we observed that eight dietary polyphenols (TF1, TF2a, TF2b, TF3, hesperidin, EGCG, myricetin and quercetagetin) have significant potential to function as inhibitors of the SARS-CoV-2 RdRp.
T220 22039-22346 Sentence denotes The top-eight scoring ligands for the SARS-CoV-2 RdRp (as highlighted in Table 1) suggest that these set of natural polyphenols can strongly bind to the catalytic site of the SARS-CoV-2 RdRp and are expected to inhibit the RdRp activity, and thus blocking the replication and preventing viral transcription.
T221 22347-22499 Sentence denotes Many reports suggest polyphenols have low systemic toxicity, and they are highly beneficial for human health (Bhardwaj et al., 2020; Cory et al., 2018).
T222 22500-22728 Sentence denotes TF1 and its gallate derivatives, collectively known as black tea polyphenols, previously have shown to exert antiviral activity against many viruses such as hepatitis virus and influenza A and B viruses (Chowdhury et al., 2018).
T223 22729-22901 Sentence denotes Hesperidin is also known to possess antiviral activity by altering the immune system mainly via regulating interferons in the influenza A virus (Randall & Goodbourn, 2008).
T224 22902-23052 Sentence denotes EGCG, a major green tea polyphenol, has several pharmacological properties, including antiviral activity (Carneiro et al., 2016; Moon & Morris, 2007).
T225 23053-23168 Sentence denotes Similarly, myricetin has also been found to act as an inhibitor of the SARS coronavirus helicase (Yu et al., 2012).
T226 23169-23291 Sentence denotes Quercetagetin also showed strong hepatitis C virus replication inhibitory activity in vitro (Ahmed-Belkacem et al., 2014).
T227 23292-23484 Sentence denotes Thus, the set dietary polyphenols identified in the present study could be used as repurposed drugs for the treatment of the SARS-CoV-2 infection with further in-vitro and in-vivo validations.
T228 23486-23490 Sentence denotes 3.2.
T229 23492-23526 Sentence denotes Molecular dynamics (MD) simulation
T230 23528-23534 Sentence denotes 3.2.1.
T231 23536-23584 Sentence denotes Thermodynamic stability and flexibility analysis
T232 23585-23869 Sentence denotes The 150 ns production simulations carried out for nine systems (complex of remdesivir, EGCG, TF1, TF2a, TF2b, TF3, hesperidin, myricetin, and quercetagetin with the SARS-CoV-2 RdRp) were stable on the basis of the potential energy and total energy (data not shown) of those complexes.
T233 23870-24051 Sentence denotes Subsequently, the root-mean-square deviations (RMSDs) of backbone atoms relative to their respective initial positions were calculated for each complex and are shown in Figure 3(A).
T234 24052-24219 Sentence denotes It is evident from Figure 3(A) that all the nine studied systems drifted from their initial positions during the first 50 ns, and after that, they reached equilibrium.
T235 24220-24503 Sentence denotes The average RMSD values were estimated to be 2.30 Å, 2.45 Å, 1.87 Å, 2.28 Å, 1.68 Å, 2.47 Å, 1.90 Å, 2.03 Å and 1.88 Å for RdRp/remdesivir, RdRp/EGCG, RdRp/TF3, RdRp/TF2b, RdRp/TF2a, RdRp/myricetin, RdRp/quercetagetin, RdRp/hesperidin, and RdRp/TF1 complexes, respectively (Table 3).
T236 24504-24605 Sentence denotes The least deviation was observed for RdRp/TF2a, while RdRp/myricetin displayed the highest deviation.
T237 24606-24827 Sentence denotes We also investigated structural variations in the binding site, including all amino acids that fall within a radius of 5 Å from the inhibitor, and the same trend was observed (Figure S2A in the Supplementary Information).
T238 24828-24886 Sentence denotes Overall, this suggests the convergence of our simulations.
T239 24887-25110 Sentence denotes Figure 3. (A) Time evolution of root-mean-square deviations (RMSDs) of backbone atoms and (B) the root-mean-square fluctuations (RMSFs) of Cα atoms of nine complexes relative to their respective energy minimized structure.
T240 25111-25119 Sentence denotes Table 3.
T241 25121-25240 Sentence denotes The average backbone RMSD, radius of gyration (RoG), and solvent accessible surface area (SASA) for all nine complexes.
T242 25241-25309 Sentence denotes The data are reported as average ± standard error of the mean (SEM).
T243 25310-25346 Sentence denotes System RMSD (Å) RoG (Å) SASA (Å2)
T244 25347-25407 Sentence denotes RdRp/Remdesivir 2.30 ± 0.03 29.96 ± 0.02 34973.20 ± 91.56
T245 25408-25462 Sentence denotes RdRp/EGCG 2.45 ± 0.05 29.52 ± 0.06 35026.03 ± 63.52
T246 25463-25516 Sentence denotes RdRp/TF3 1.87 ± 0.02 29.60 ± 0.01 34080.16 ± 53.41
T247 25517-25571 Sentence denotes RdRp/TF2b 2.28 ± 0.01 29.86 ± 0.02 35462.92 ± 50.40
T248 25572-25627 Sentence denotes RdRp/TF2a 1.68 ± 0.02 29.75 ± 0.02 34312.55 ± 112.89
T249 25628-25688 Sentence denotes RdRp/Myricetin 2.47 ± 0.03 29.88 ± 0.01 35395.35 ± 104.67
T250 25689-25752 Sentence denotes RdRp/Quercetagetin 1.90 ± 0.03 29.84 ± 0.01 34618.65 ± 51.25
T251 25753-25813 Sentence denotes RdRp/Hesperidin 2.03 ± 0.04 29.74 ± 0.02 34554.08 ± 47.25
T252 25814-26098 Sentence denotes RdRp/TF1 1.88 ± 0.03 29.86 ± 0.01 34420.69 ± 56.90 Next, we investigated the structural stability of remdesivir and eight polyphenols by estimating the temporal RMSDs of heavy atoms relative to their respective initial coordinates (see Figure S2B in the Supplementary Information).
T253 26099-26252 Sentence denotes It is evident from Figure S2B that EGCG, myricetin, quercetagetin, TF1, TF3 displayed a rigid behavior in the bound form with an average RMSD of < 1.0 Å.
T254 26253-26415 Sentence denotes However, remdesivir, TF2a, TF2b and hesperidin showed higher fluctuations as compared to the abovementioned polyphenols, and an average RMSD of > 2.0 Å was noted.
T255 26416-26570 Sentence denotes To identify the regions which are flexible, the root-mean-square fluctuations (RMSFs) of Cα atoms of each residue are calculated and shown in Figure 3(B).
T256 26571-26742 Sentence denotes From this analysis, we can get a better insight into what extent the binding of remdesivir and natural polyphenols affects the residual flexibility of RdRp (mainly Nsp12).
T257 26743-26837 Sentence denotes Figure 3(B) indicates that RdRp/remdesivir and RdRp-polyphenols shared a similar RMSF pattern.
T258 26838-26953 Sentence denotes Notable dynamic fluctuations were located in the non-active site domain, including both N-terminals and C-terminal.
T259 26954-27087 Sentence denotes Regions around Asn150, Asp260, Arg305, Asn360, and Phe440 are found to be more flexible compared to the other area for all complexes.
T260 27088-27412 Sentence denotes The binding pocket residues, such as Asp452, Lys545, Lys551, Tyr455, Arg553, Ala554, Arg555, Thr556, Asp618, Tyr619, pro620, Lys621, Cys622, Asp623 Arg624, Asn691, Asp760, Asp761, Phe793, Met794, Ser795, Lys798, Trp800, Glu811, Phe812, and Ser814 exhibited considerably low fluctuations for all the RdRp-inhibitor complexes.
T261 27413-27556 Sentence denotes In the case of RdRp/TF3 and RdRp/TF2a, the binding site residues displayed lesser fluctuations compared to the other RdRp-polyphenol complexes.
T262 27557-27661 Sentence denotes This suggests that TF3 and TF2a are likely to be bound to RdRp more strongly than the other polyphenols.
T263 27662-27853 Sentence denotes Since the radius of gyration (RoG) helps us to understand the protein structural compactness, RoG of each complex was monitored and represented in Figure S3A in the Supplementary Information.
T264 27854-28094 Sentence denotes The average values of RoG are 29.96 Å, 29.52 Å, 29.60 Å, 29.86 Å, 29.75 Å, 29.88 Å, 29.84 Å, 29.74 Å and 29.86 Å for RdRp complexed with remdesivir, EGCG, TF3, TF2b, TF2a, myricetin, quercetagetin, hesperidin and TF1 respectively (Table 3).
T265 28095-28179 Sentence denotes This suggests that the structural compactness remained unchanged during simulations.
T266 28180-28374 Sentence denotes Finally, the solvent-accessible surface area (SASA) was also explored, and the time evolution of SASA for four RdRp-polyphenol complexes are shown in Figure S3B in the Supplementary Information.
T267 28375-28426 Sentence denotes The average values of SASA are reported in Table 3.
T268 28427-28538 Sentence denotes Binding of an inhibitor to the substrate changes SASA and sometimes could greatly affect the protein structure.
T269 28539-28663 Sentence denotes Here, a relatively higher SASA value was obtained for RdRp/TF2b (35462.9 Å2) compared to the other RdRp/inhibitor complexes.
T270 28664-28741 Sentence denotes On the other hand, the lowest SASA value was noted for RdRp/TF3 (34080.2 Å2).
T271 28742-28835 Sentence denotes Thus, it can be suggested that the binding of TF3 could potentially reduce protein expansion.
T272 28837-28843 Sentence denotes 3.2.2.
T273 28845-28873 Sentence denotes Binding free energy analysis
T274 28874-29107 Sentence denotes We predicted the binding free energy of all nine complexes by utilizing the MM-PBSA scheme, and four polyphenols, namely EGCG, TF3, TF2b, and TF2a, displayed a higher estimated affinity compared to remdesivir as depicted in Figure 4.
T275 29108-29207 Sentence denotes Various components of the binding free energy of EGCG, TF3, TF2b, and TF2a are reported in Table 4.
T276 29208-29350 Sentence denotes The remaining four polyphenols which showed lower estimated affinity compare to remdesivir are shown in Table S2 in Supplementary Information.
T277 29351-29576 Sentence denotes It can be noted from Figure 4 that the intermolecular van der Waals (ΔEvdW) and electrostatic (ΔEelec) terms are favorable for the ligand binding, whereas the desolvation of polar groups (ΔGpol) opposes the complex formation.
T278 29577-29658 Sentence denotes Non-polar solvation free energy (ΔGnp) is favorable to the binding for all cases.
T279 29659-29742 Sentence denotes A similar trend was observed in our earlier study (Sk, Roy, Jonniya, et al., 2020).
T280 29743-29752 Sentence denotes Figure 4.
T281 29754-30041 Sentence denotes Energy components (kcal/mol) for the binding of remdesivir and four polyphenols to RdRp receptor. ΔEvdW, van der Waals interaction; ΔEele, electrostatic interaction in the gas phase; ΔGpol, polar solvation energy; ΔGnp, non-polar solvation energy, and ΔGbind, estimated binding affinity.
T282 30042-30050 Sentence denotes Table 4.
T283 30052-30176 Sentence denotes Energetic components of the binding free energy of RdRp and natural polyphenols along with remdesivir complexes in kcal/mol.
T284 30177-30215 Sentence denotes Data are represented as average ± SEM.
T285 30216-30261 Sentence denotes Components Remdesivir EGCG TF3 TF2b TF2a
T286 30262-30342 Sentence denotes ΔEvdW −31.85 ± 0.15 −25.11 ± 0.18 −37.82 ± 0.21 −30.66 ± 0.23 −22.55 ± 0.19
T287 30343-30425 Sentence denotes ΔEelec −98.40 ± 0.70 −69.38 ± 0.73 −123.63 ± 0.88 −47.18 ± 0.64 −95.28 ± 1.27
T288 30426-30503 Sentence denotes ΔGpol 109.97 ± 0.57 71.62 ± 0.48 124.47 ± 0.58 55.01 ± 0.49 94.94 ± 1.10
T289 30504-30578 Sentence denotes ΔGnp −4.29 ± 0.01 −4.15 ± 0.01 −5.29 ± 0.01 −3.91 ± 0.01 −4.28 ± 0.02
T290 30579-30657 Sentence denotes aΔGsolv 105.68 ± 0.57 67.47 ± 0.48 119.18 ± 0.58 51.1 ± 0.49 90.66 ± 1.10
T291 30658-30738 Sentence denotes bΔGpol + elec 11.57 ± 0.90 2.24 ± 0.87 0.84 ± 1.05 7.83 ± 0.80 −0.34 ± 1.68
T292 30739-30822 Sentence denotes cΔEMM −130.25 ± 0.71 −94.49 ± 0.75 −161.45 ± 0.90 −77.84 ± 0.68 −117.83 ± 1.28
T293 30823-30907 Sentence denotes ΔGbindSim −24.57 ± 0.91 −27.02 ± 0.89 −42.27 ± 1.07 −26.74 ± 0.83 −27.17 ± 1.69
T294 30908-30933 Sentence denotes a ΔGsolv = ΔGnp + ΔGpol,
T295 30934-30967 Sentence denotes b ΔGpol + elec = ΔEelec + ΔGpol,
T296 30968-30993 Sentence denotes c ΔEMM = ΔEvdW + ΔEelec.
T297 30994-31163 Sentence denotes It is evident from Table 4 that for all complexes, ΔEvdW varies between −22.55 kcal/mol and −37.82 kcal/mol while ΔEelec ranges from −47.18 kcal/mol to −123.63 kcal/mol.
T298 31164-31610 Sentence denotes Furthermore, in the cases of RdRp/remdesivir, RdRp/EGCG, RdRp/TF3, and RdRp/TF2b, ΔEele is over-compensated by the desolvation energy (ΔGpol), indicating that the sum of these two components, ΔGpol + elec, is unfavorable to the binding and varies between 0.84 kcal/mol and 11.57 kcal/mol (see Table 4) and similar results are found for RdRp/myricetin, RdRp/quercetagetin, RdRp/hesperidin, and RdRp/TF1 (see Table S2 in Supplementary Information).
T299 31611-31729 Sentence denotes In contrast, in the case of RdRp/TF2a, ΔGpol + elec, is favorable to the complexation (ΔGpol + elec = −0.34 kcal/mol).
T300 31730-31882 Sentence denotes Overall, this suggests that the complex formation is mainly driven by the van der Waals interactions between polyphenols as well as remdesivir and RdRp.
T301 31883-31987 Sentence denotes Therefore, hydrophobic residues in the binding pocket played a crucial role in the complexation process.
T302 31988-32304 Sentence denotes The estimated binding free energy (ΔGbind) of remdesivir, EGCG, TF3, TF2b, and TF2a were −24.57, −27.02, −42.27, −26.74 and −27.17 kcal/mol, respectively (Table 4) and myricetin, quercetagetin, hesperidin and TF1 show lower binding affinity compared to that of remdesivir (Table S2 in the Supplementary Information).
T303 32305-32394 Sentence denotes This suggests that polyphenol TF3 binds most strongly to RdRp, followed by TF2a and EGCG.
T304 32395-32502 Sentence denotes The potency of the five inhibitors decreases in the following order: TF3 > TF2a > EGCG > TF2b > remdesivir.
T305 32503-32632 Sentence denotes TF3 binds most strongly to RdRp because both ΔEvdW and ΔEelec are more favorable to the binding compared to the other inhibitors.
T306 32633-32893 Sentence denotes Similarly, TF2a binds more strongly to RdRp compared to EGCG or TF2b because ΔGpol + elec is favorable for TF2a (ΔGpol + elec = −0.34 kcal/mol) while it is found to be unfavorable for EGCG (ΔGpol + elec = 2.24 kcal/mol) and TF2b (ΔGpol + elec = 7.83 kcal/mol).
T307 32895-32901 Sentence denotes 3.2.3.
T308 32903-32945 Sentence denotes Essential residues for polyphenols binding
T309 32946-33155 Sentence denotes Further, to gain a deeper insight into the best four RdRp/polyphenols and remdesivir interaction pattern, the total binding free energy was decomposed into polyphenols-residue pair based on the MM-GBSA scheme.
T310 33156-33346 Sentence denotes The approach of per-residue based contributions is useful to determine the binding mechanisms of an inhibitor at an atomistic level, and it also reveals the individual residue contributions.
T311 33347-33475 Sentence denotes The different energy contributions from the backbone and side-chain of each residue are shown in Figure 5 and listed in Table 5.
T312 33476-33485 Sentence denotes Figure 5.
T313 33487-33633 Sentence denotes Decomposition of the binding free energy into contributions from individual residues for RdRp complexed with remdesivir, EGCG, TF3, TF2b and TF2a.
T314 33634-33642 Sentence denotes Table 5.
T315 33644-33780 Sentence denotes Per-residue based decomposition of binding free energy for the complex of remdesivir, EGCG, TF3, TF2a and TF2b with the SARS-CoV-2 RdRp.
T316 33781-33844 Sentence denotes Residue TvdW Telec Tpol Tnp Tside_chain Tbackbone Ttotal
T317 33845-33860 Sentence denotes RdRp/Remdesivir
T318 33861-33916 Sentence denotes Asp761 1.05 −21.73 18.81 −0.14 −1.82 −0.19 −2.01
T319 33917-33970 Sentence denotes Lys798 −2.74 −4.28 5.74 −0.47 −1.76 0.01 −1.75
T320 33971-34025 Sentence denotes Pro620 −1.42 −1.15 1.16 −0.18 −1.26 −0.33 −1.59
T321 34026-34080 Sentence denotes Asp760 −0.57 −4.27 4.24 −0.12 −0.20 −0.52 −0.72
T322 34081-34134 Sentence denotes Arg553 −2.07 −3.71 5.61 −0.51 −0.76 0.08 −0.68
T323 34135-34144 Sentence denotes RdRp/EGCG
T324 34145-34198 Sentence denotes Asp452 1.65 −16.48 9.85 −0.08 −5.15 0.09 −5.06
T325 34199-34252 Sentence denotes Arg553 −3.83 −4.84 6.59 −0.59 −2.68 0.01 −2.67
T326 34253-34307 Sentence denotes Pro620 −1.64 −0.41 0.51 −0.33 −1.62 −0.25 −1.87
T327 34308-34361 Sentence denotes Asp618 0.49 −8.14 6.66 −0.09 −1.13 −0.05 −1.08
T328 34362-34416 Sentence denotes Lys621 −2.26 −5.12 6.92 −0.50 −0.87 −0.09 −0.96
T329 34417-34425 Sentence denotes RdRp/TF3
T330 34426-34481 Sentence denotes Asp761 2.52 −30.13 22.11 −0.25 −5.54 −0.21 −5.75
T331 34482-34538 Sentence denotes Arg836 −0.83 −14.95 12.29 −0.37 −3.85 −0.01 −3.86
T332 34539-34593 Sentence denotes Arg555 −5.80 −4.00 7.29 −0.70 −2.98 −0.23 −3.21
T333 34594-34648 Sentence denotes Thr556 −0.20 −3.96 2.44 −0.13 −0.21 −1.64 −1.85
T334 34649-34703 Sentence denotes Ile548 −1.03 −0.08 0.12 −0.13 −0.65 −0.47 −1.12
T335 34704-34757 Sentence denotes Ser814 −1.67 0.09 0.78 −0.08 −0.48 −0.40 −0.88
T336 34758-34812 Sentence denotes Val557 −0.65 −0.16 0.17 −0.24 −0.65 −0.23 −0.88
T337 34813-34822 Sentence denotes RdRp/TF2b
T338 34823-34877 Sentence denotes His816 −3.00 −0.81 1.69 −0.32 −1.63 −0.81 −2.44
T339 34878-34932 Sentence denotes Asp833 −1.29 −0.23 0.46 −0.18 −0.21 −1.03 −1.24
T340 34933-34987 Sentence denotes Tyr877 −0.92 −2.06 2.06 −0.27 −0.43 −0.76 −1.19
T341 34988-35040 Sentence denotes Glu811 0.22 −9.24 8.11 −0.13 −2.07 1.03 −1.04
T342 35041-35095 Sentence denotes His810 −1.88 −0.41 1.66 −0.34 −0.10 −0.85 −0.95
T343 35096-35150 Sentence denotes Tyr831 −1.51 −0.36 1.19 −0.13 −0.21 −0.60 −0.81
T344 35151-35205 Sentence denotes Asn815 −0.60 −0.27 0.09 −0.01 −0.25 −0.54 −0.79
T345 35206-35215 Sentence denotes RdRp/TF2a
T346 35216-35271 Sentence denotes Asp618 2.63 −20.71 13.40 −0.17 −4.84 −0.01 −4.85
T347 35272-35326 Sentence denotes Arg553 −3.80 −6.52 7.55 −0.69 −2.68 −0.78 −3.46
T348 35327-35381 Sentence denotes Lys551 −2.23 −0.80 2.23 −0.45 −0.84 −0.41 −1.25
T349 35382-35436 Sentence denotes Arg555 −1.33 −0.62 1.05 −0.27 −1.12 −0.05 −1.17
T350 35437-35719 Sentence denotes Glu167 0.42 −6.82 5.92 −0.12 −0.61 0.01 −0.60 As shown in Figure 5, it was observed that residues favoring the binding of the polyphenols with RdRp include Asp452, Arg553, Arg555, Val557, Asp618, Pro620, Lys621, Asp623, Arg624, Asp760, Asp761, and Glu811, Asp833, and Arg836.
T351 35720-35844 Sentence denotes Most of these residues are located in the binding site of RdRp and can form direct contacts with polyphenols and remdesivir.
T352 35845-36221 Sentence denotes Figure 5 shows that amino acids Pro620, Asp761 and Lys798 for RdRp/remdesivir; Asp452, Arg553, Pro620 and Lys621 for RdRp/EGCG; Ile548, Arg555, Thr556, Asp761 and Arg836 for RdRp/TF3; Glu811, His816, Asp833 and Tyr877 for RdRp/TF2b; Lys551, Arg553, Arg555 and Asp618 for RdRp/TF2a contributed more favorably towards the binding by contributing more than −1.0 kcal/mol in size.
T353 36222-36402 Sentence denotes To complement the energetic analysis, we performed MD trajectory-based hydrogen bond (h-bond) analysis for all five complexes, and the h-bonds with occupancy are listed in Table 6.
T354 36403-36511 Sentence denotes The h-bonds were determined by setting the acceptor-donor distance of ≤ 3.5 Å, and the angle cut off ≥ 1200.
T355 36512-36576 Sentence denotes Important h-bonds between RdRp-inhibitors are shown in Figure 6.
T356 36577-36700 Sentence denotes In the case of RdRp/remdesivir, key residues involved in the hydrogen bonding are Asp761, Asp760, and Ser759, respectively.
T357 36701-36858 Sentence denotes Asp760 is found to form two h-bonds with remdesivir (Asp760@OD2 - Lig@O7, Asp760@OD2 - Lig@O6) with an occupancy of more than 15% (see Table 6 and Figure 6).
T358 36859-36991 Sentence denotes In the case of RdRp/EGCG, both Asp618 and Asp760 form two h-bonds with the ligand with an occupancy in the range of 16.09 to 30.17%.
T359 36992-37239 Sentence denotes On the other hand, Asp761 form an h-bond with TF3 (Asp761@OD1 - Lig@O11) with an occupancy of 69.84%, while Arg836 forms two h-bonds with the ligand (Arg836@NH2 - Lig@O14, Arg836@NE - Lig@O14) with an occupancy of 52.66%, and 48.70%, respectively.
T360 37240-37392 Sentence denotes Glu811, Thr556 and Asp761 also formed h-bonds with the ligand during our simulations with an occupancy varying in the range of 44% to 58% (see Table 6).
T361 37393-37574 Sentence denotes In the case of RdRp/TF2b, Glu811 is found to form two strong h–bonds with the ligand (Glu811@OE1 – Lig@O7, Glu811@OE2 – Lig@O7) with an occupancy of 22.45% and 18.89%, respectively.
T362 37575-37744 Sentence denotes On the other hand, it can be observed from Table 6 that Pro832 and Tyr877 form strong h-bonds (Pro832@O -Lig@O8 and Lig@O10 -Tyr877@OH) with increased occupancy (> 24%).
T363 37745-37935 Sentence denotes Finally, in the case of RdRp/TF2a, Asp618 is found to form two strong h-bonds with the TF2a (Asp618@OD1 – Lig@O10, Asp618@OD1 – Lig@O11) with an occupancy of 38.68% and 38.38%, respectively.
T364 37936-38012 Sentence denotes Asp760 also forms a h-bond (Asp760@O – Lig@O11) with an occupancy of 20.83%.
T365 38013-38022 Sentence denotes Figure 6.
T366 38024-38086 Sentence denotes Five main hydrogen bond interactions between ligands and RdRp.
T367 38087-38095 Sentence denotes Table 6.
T368 38097-38310 Sentence denotes Main hydrogen bond interactions formed by RdRp with remdesivir and polyphenols along with the corresponding average distance and percentage of occupancy determined using the trajectories of production simulations.
T369 38311-38332 Sentence denotes Acceptor Donor Avg.
T370 38333-38360 Sentence denotes Distance (Å) Occupancy (%)
T371 38361-38376 Sentence denotes RdRp/Remdesivir
T372 38377-38408 Sentence denotes Asp760@OD2 Lig@O7 2.66 19.46
T373 38409-38440 Sentence denotes Asp761@OD1 Lig@O7 2.65 17.70
T374 38441-38472 Sentence denotes Asp761@OD2 Lig@O6 2.63 16.86
T375 38473-38504 Sentence denotes Asp760@OD2 Lig@O6 2.65 16.65
T376 38505-38535 Sentence denotes Lig@O6 Ser759@OG 2.80 11.63
T377 38536-38567 Sentence denotes Asp760@OD1 Lig@O7 2.66 10.59
T378 38568-38577 Sentence denotes RdRp/EGCG
T379 38578-38609 Sentence denotes Asp618@OD1 Lig@O5 2.61 30.13
T380 38610-38641 Sentence denotes Asp618@OD1 Lig@O6 2.61 29.28
T381 38642-38673 Sentence denotes Asp618@OD2 Lig@O5 2.61 18.25
T382 38674-38705 Sentence denotes Asp618@OD2 Lig@O6 2.61 17.38
T383 38706-38737 Sentence denotes Asp760@OD1 Lig@O5 2.63 16.09
T384 38738-38769 Sentence denotes Tyr455@OH Lig@O11 2.83 10.97
T385 38770-38778 Sentence denotes RdRp/TF3
T386 38779-38811 Sentence denotes Asp761@OD1 Lig@O11 2.61 69.84
T387 38812-38842 Sentence denotes Glu811@O Lig@O10 2.76 58.43
T388 38843-38872 Sentence denotes Thr556@O Lig@O3 2.72 56.95
T389 38873-38905 Sentence denotes Lig@O14 Arg836@NH2 2.83 52.66
T390 38906-38937 Sentence denotes Lig@O14 Arg836@NE 2.86 48.70
T391 38938-38970 Sentence denotes Asp761@OD2 Lig@O20 2.62 44.51
T392 38971-38980 Sentence denotes RdRp/TF2b
T393 38981-39010 Sentence denotes Pro832@O Lig@O8 2.77 26.31
T394 39011-39042 Sentence denotes Lig@O11 Tyr877@OH 2.75 24.39
T395 39043-39074 Sentence denotes Glu811@OE1 Lig@O7 2.65 22.45
T396 39075-39106 Sentence denotes Glu811@OE2 Lig@O7 2.65 18.89
T397 39107-39138 Sentence denotes Asp833@OD2 Lig@O8 2.65 12.01
T398 39139-39170 Sentence denotes Asn874@OD1 Lig@O11 2.68 8.58
T399 39171-39180 Sentence denotes RdRp/TF2a
T400 39181-39213 Sentence denotes Asp618@OD1 Lig@O10 2.59 38.68
T401 39214-39246 Sentence denotes Asp618@OD1 Lig@O11 2.62 38.38
T402 39247-39277 Sentence denotes Asp760@O Lig@O11 2.70 20.83
T403 39278-39310 Sentence denotes Asp618@OD2 Lig@O11 2.62 16.59
T404 39311-39343 Sentence denotes Asp618@OD2 Lig@O10 2.58 16.49
T405 39344-39599 Sentence denotes Asp618@OD1 Lig@O15 2.67 16.37 Finally, we supplemented the above results by analyzing the final conformation of each production simulation with the help of 2D LigPlot+ software, and different h-bonds and hydrophobic interactions were shown in Figure 7.
T406 39600-39722 Sentence denotes Hydrogen bonds are depicted in green dotted lines, while red semicircle residues are involved in hydrophobic interactions.
T407 39723-39888 Sentence denotes For the RdRp/remdesivir complex, Figure 7(A) displayed nine hydrophobic interactions with Lys545, Ala547, Ser549, Arg553, Val557, Asp684, Ser759, Ser814, and Arg836.
T408 39889-40002 Sentence denotes This large number of interactions account for the high stability and good binding affinity of remdesivir to RdRp.
T409 40003-40099 Sentence denotes EGCG formed hydrophobic interactions with Lys551, Ala554, Arg553, Arg624, Pro620, (Figure 7(B)).
T410 40100-40261 Sentence denotes In the case of TF3, eight hydrophobic interactions with His439, Ile548, Ser814, Phe812, Val557, Ser549, Tyr619 and Arg555 were formed as revealed by Figure 7(C).
T411 40262-40405 Sentence denotes Figure 7(D) shows that seven hydrophobic interactions with Asp833, His816, Pro832, Gln815, His872, His810 and Ser434 were formed for RdRp/TF2b.
T412 40406-40511 Sentence denotes Finally, Figure 7(E) shows that RdRp/TF2a formed hydrophobic interactions with Arg555, Ala554 and Lys551.
T413 40512-40678 Sentence denotes Overall, TF3 has a higher binding affinity toward RdRp compared to the other polyphenols due to a larger number of stable hydrogen bonds and hydrophobic interactions.
T414 40679-40688 Sentence denotes Figure 7.
T415 40690-40813 Sentence denotes The RdRp-ligands interaction profile for (A) RdRp/remdesivir, (B) RdRp/EGCG, (C) RdRp/TF3, (D) RdRp/TF2b and (E) RdRp/TF2a.
T416 40814-40875 Sentence denotes The polyphenols and remdesivir are shown in balls and sticks.
T417 40876-40997 Sentence denotes Hydrogen bonds are depicted in green dotted lines, and red semicircles residues are involved in hydrophobic interactions.
T418 40999-41003 Sentence denotes 3.3.
T419 41005-41100 Sentence denotes Prediction of the absorption, distribution, metabolism, excretion, and toxicity (ADMET) profile
T420 41101-41391 Sentence denotes In addition to testing the physiochemical efficiency of a given molecule to inhibit the target protein, other parameters such as absorption, distribution, metabolism, excretion, and toxicity (ADMET) of the inhibitor play a critical role on demonstrating the likelihood of success of a drug.
T421 41392-41640 Sentence denotes Utilization of in-silico ADMET profiling, in combination with in vivo and in vitro predictions in the initial stage of the screening process, can significantly fasten the drug discovery process by minimizing the number of potential safety problems.
T422 41641-41884 Sentence denotes Hence, we performed a detailed ADMET profiling to evaluate the drug likeliness of the four polyphenols: EGCG, TF2a, TF2b, TF3 that exhibited the highest score from the MD simulation and MM-PBSA study along with the positive control remdesivir.
T423 41885-42048 Sentence denotes Human colon adenocarcinoma-2 cell line (Caco2) permeability and human intestinal absorption (HIA) are key parameters to decide the total bioavailability of a drug.
T424 42049-42255 Sentence denotes All the five compounds (EGCG, TF2a, TF2b, TF3, and remdesivir) showed comparatively low Caco2 permeability potential (<8 × 10−6 cm/s) and could be absorbed via the human intestine (Larregieu & Benet, 2013).
T425 42256-42409 Sentence denotes EGCG, TF2a, TF2b, TF3, and remdesivir were predicted to be substrates of permeability glycoprotein (P-glycoprotein), which is an efflux membrane protein.
T426 42410-42592 Sentence denotes However, remdesivir was predicted as a P-glycoprotein I inhibitor, and EGCG and TF3 as a P-glycoprotein II inhibitor, whereas TF2a and TF2b as both P-glycoprotein I and II inhibitor.
T427 42593-42740 Sentence denotes Hence, above mentioned five compounds could regulate the physiological functions of P-glycoprotein (see Table S3 in the Supplementary Information).
T428 42741-42914 Sentence denotes The distribution of a drug is regulated by many parameters such as lipid-solubility, concentration in plasma and binding ability to plasma proteins, transport proteins, etc.
T429 42915-43094 Sentence denotes The volume of distribution at steady-state (VDss) suggests that EGCG, TF2a, TF2b, TF3, and remdesivir had a lower theoretical dose required for uniform distribution in the plasma.
T430 43095-43327 Sentence denotes Further, the degree of diffusion across the plasma membrane increases in the following order remdesivir < EGCG < TF2a < TF2b < TF3 (Table S4 in the Supplementary Information) as measured by the fraction that is in the unbound state.
T431 43328-43558 Sentence denotes The predictions through the distribution of the drugs via the central nervous system and blood-brain barrier suggest that these five compounds are poorly distributed to the brain and unable to penetrate the central nervous system.
T432 43559-43695 Sentence denotes However, the medium level of the lipophilicity of the drugs suggests that they would have no negative impact on nervous system exposure.
T433 43696-43766 Sentence denotes Cytochromes P450 (CYP) isozymes play crucial roles in drug metabolism.
T434 43767-43897 Sentence denotes It has been observed that TF2a, TF3, and remdesivir are a substrate of CYP3A4 and hence, can be efficiently metabolized by CYP3A4.
T435 43898-43988 Sentence denotes On the other hand, EGCG is a CYP3A4 inhibitor (Table S5 in the Supplementary Information).
T436 43989-44171 Sentence denotes On a separate note, EGCG is predominantly metabolized in the small intestine and liver by the conjugate formation of glucuronide, methyl sulfates in the urine and plasma (Chow et al.
T437 44172-44178 Sentence denotes 2005).
T438 44179-44356 Sentence denotes Among the five compounds, TF2b and TF3 were predicted as the substrate of renal organic cation transporter-2 (Renal OCT2), as shown in Table S6 in the Supplementary Information.
T439 44357-44481 Sentence denotes While EGCG, TF2a, and remdesivir are possibly cleared through other available routes such as bile, breath, faces, and sweat.
T440 44482-44580 Sentence denotes EGCG remains intact in the plasma and later excreted via bile and metabolized by colon microflora.
T441 44581-44661 Sentence denotes It is also expected that all the compounds are absorbable via oral prescription.
T442 44662-44768 Sentence denotes We have also analyzed the toxicity profiles for EGCG, TF2a, TF2b, TF3 as well as remdesivir (see Table 7).
T443 44769-44937 Sentence denotes The toxicity prediction from the AMES test (Salmonella typhimurium reverse mutation assay) exhibited that all the compounds could be considered as non-mutagenic agents.
T444 44938-45013 Sentence denotes High toxicity was observed for all the compounds in Tetrahymena pyriformis.
T445 45014-45124 Sentence denotes EGCG, TF2a, TF2b, TF3, and remdesivir were shown to inhibit the human ether-a-go-go-related gene II (hERG II).
T446 45125-45267 Sentence denotes However, Remdesivir has been shown to induce hepatotoxicity, whilst EGCG, TF2a, TF2b, TF3 are not likely to be associated with hepatotoxicity.
T447 45268-45449 Sentence denotes The maximum recommended tolerated dose (MRTD) in human prediction shows that remdesivir violate MRTD whereas natural polyphenol EGCG, TF2a, TF2b, TF3 do not fall into this category.
T448 45450-45604 Sentence denotes Remdesivir does not possess high acute toxicity whereas EGCG, TF2a, TF2b, and TF3 regarded as high acute toxic compound as it falls under minnow toxicity.
T449 45605-45692 Sentence denotes Additionally, none of the compounds predicted to be associated with skin sensitization.
T450 45693-45701 Sentence denotes Table 7.
T451 45703-45771 Sentence denotes Predicted toxicity profile of EGCG, TF3, TF2b, TF2a, and remdesivir.
T452 45772-45774 Sentence denotes S.
T453 45775-45778 Sentence denotes No.
T454 45780-45818 Sentence denotes Compounds name Toxicity prediction  
T455 45819-45853 Sentence denotes     Properties Predicted values
T456 45854-45880 Sentence denotes 1 EGCG AMES toxicity No
T457 45881-45940 Sentence denotes     Maximum tolerated dose (Human) 0.441 (log mg/kg/day)
T458 45941-45967 Sentence denotes     hERG I inhibitor No
T459 45968-45996 Sentence denotes     hERG II inhibitor Yes
T460 45997-46049 Sentence denotes     Oral rat acute toxicity (LD50) 2.522 (mol/kg)
T461 46050-46115 Sentence denotes     Oral rat chronic toxicity (LOAEL) 3.065 (log mg/kg_bw/day)
T462 46116-46140 Sentence denotes     Hepatotoxicity No
T463 46141-46167 Sentence denotes     Skin sensitivity No
T464 46168-46210 Sentence denotes     T. pyriformis toxicity 0.285 (µg/L)
T465 46211-46246 Sentence denotes     Minnow toxicity 7.713 log mM
T466 46247-46272 Sentence denotes 2 TF3 AMES toxicity No
T467 46273-46332 Sentence denotes     Maximum tolerated dose (Human) 0.438 (log mg/kg/day)
T468 46333-46359 Sentence denotes     hERG I inhibitor No
T469 46360-46388 Sentence denotes     hERG II inhibitor Yes
T470 46389-46441 Sentence denotes     Oral rat acute toxicity (LD50) 2.482 (mol/kg)
T471 46442-46507 Sentence denotes     Oral rat chronic toxicity (LOAEL) 7.443 (log mg/kg_bw/day)
T472 46508-46532 Sentence denotes     Hepatotoxicity No
T473 46533-46559 Sentence denotes     Skin sensitivity No
T474 46560-46602 Sentence denotes     T. pyriformis toxicity 0.285 (µg/L)
T475 46603-46638 Sentence denotes     Minnow toxicity 9.738 log mM
T476 46639-46665 Sentence denotes 3 TF2b AMES toxicity No
T477 46666-46725 Sentence denotes     Maximum tolerated dose (Human) 0.438 (log mg/kg/day)
T478 46726-46752 Sentence denotes     hERG I inhibitor No
T479 46753-46781 Sentence denotes     hERG II inhibitor Yes
T480 46782-46834 Sentence denotes     Oral rat acute toxicity (LD50) 2.482 (mol/kg)
T481 46835-46900 Sentence denotes     Oral rat chronic toxicity (LOAEL) 5.322 (log mg/kg_bw/day)
T482 46901-46925 Sentence denotes     Hepatotoxicity No
T483 46926-46952 Sentence denotes     Skin sensitivity No
T484 46953-46995 Sentence denotes     T. pyriformis toxicity 0.285 (µg/L)
T485 46996-47031 Sentence denotes     Minnow toxicity 8.685 log mM
T486 47032-47058 Sentence denotes 4 TF2a AMES toxicity No
T487 47059-47118 Sentence denotes     Maximum tolerated dose (Human) 0.439 (log mg/kg/day)
T488 47119-47145 Sentence denotes     hERG I inhibitor No
T489 47146-47174 Sentence denotes     hERG II inhibitor Yes
T490 47175-47227 Sentence denotes     Oral rat acute toxicity (LD50) 2.484 (mol/kg)
T491 47228-47293 Sentence denotes     Oral rat chronic toxicity (LOAEL) 5.035 (log mg/kg_bw/day)
T492 47294-47318 Sentence denotes     Hepatotoxicity No
T493 47319-47345 Sentence denotes     Skin sensitivity No
T494 47346-47388 Sentence denotes     T. pyriformis toxicity 0.285 (µg/L)
T495 47389-47424 Sentence denotes     Minnow toxicity 4.898 log mM
T496 47425-47457 Sentence denotes 5 Remdesivir AMES toxicity No
T497 47458-47516 Sentence denotes     Maximum tolerated dose (Human) 0.15 (log mg/kg/day)
T498 47517-47543 Sentence denotes     hERG I inhibitor No
T499 47544-47572 Sentence denotes     hERG II inhibitor Yes
T500 47573-47625 Sentence denotes     Oral rat acute toxicity (LD50) 2.043 (mol/kg)
T501 47626-47691 Sentence denotes     Oral rat chronic toxicity (LOAEL) 1.639 (log mg/kg_bw/day)
T502 47692-47717 Sentence denotes     Hepatotoxicity Yes
T503 47718-47744 Sentence denotes     Skin sensitivity No
T504 47745-47787 Sentence denotes     T. pyriformis toxicity 0.285 (µg/L)
T505 47788-47823 Sentence denotes     Minnow toxicity 0.291 log mM
T506 47825-47829 Sentence denotes 3.4.
T507 47831-47914 Sentence denotes Identification of target class for natural polyphenol via target prediction studies
T508 47915-48120 Sentence denotes The polyphenolic structural motif of dietary polyphenols allows them to serve as excellent hydrogen bond donors which in turn help them to strongly interact with various biomacromolecules such as proteins.
T509 48121-48251 Sentence denotes This interaction is a critical step in the regulatory role of polyphenols on various key proteins involved in cellular physiology.
T510 48252-48397 Sentence denotes The majority, if not all, of the beneficial effect of polyphenols, can be explained via the functional consequence of proteins it interacts with.
T511 48398-48497 Sentence denotes Molecular target studies help us to predict therapeutic protein targets for a given small molecule.
T512 48498-48603 Sentence denotes Herein, we analyzed the predicted interacting proteins/enzymes for EGCG, TF2a, TF2b, TF3, and remdesivir.
T513 48604-48791 Sentence denotes This study is particularly important in the current context as we think that these polyphenols could target RdRp, an important enzyme that catalyzes the RNA replication in the SARS-CoV-2.
T514 48792-48971 Sentence denotes Notably, the molecular target analysis suggests that all four polyphenols possess excellent properties of druggability, and they interact with a diverse class of proteins/enzymes.
T515 48972-49094 Sentence denotes The top 25 target classes of EGCG, TF2a, TF2b, TF3, and remdesivir are represented in the pie-chart, as shown in Figure 8.
T516 49095-49289 Sentence denotes The detailed output table with the target, common name, UniProt ID, ChEMBL ID, target class, probability, and known actives in 2D/3D are listed in Tables S7–S11 in the Supplementary Information.
T517 49290-49299 Sentence denotes Figure 8.
T518 49301-49436 Sentence denotes Molecular target predictions for (A) EGCG, (B) TF2a, (C) TF2b (D) TF3, and (E) remdesivir obtained from swiss target prediction report.
T519 49437-49511 Sentence denotes The frequency of the target classes (top 25) is depicted in the pie chart.
T520 49513-49515 Sentence denotes 4.
T521 49517-49528 Sentence denotes Conclusions
T522 49529-49840 Sentence denotes Keeping in mind that RdRp inhibitors play a crucial role to combat the SARS-CoV-2 infection, in this work, we performed a comprehensive molecular docking study with a library of hundred natural polyphenols with potential antiviral properties that may inhibit the SARS-CoV-2 RdRp and prevent the RNA replication.
T523 49841-49960 Sentence denotes We shortlisted eight natural polyphenols having binding energy −7.0 kcal/mol or less for molecular dynamics simulation.
T524 49961-50302 Sentence denotes Further, we performed 150 ns molecular dynamics simulation of RdRp/EGCG, RdRp/TF1, RdRp/TF2a, RdRp/TF2b, RdRp/TF3, RdRp/hesperidin, RdRp/myricetin, RdRp/quercetagetin, along with RdRp/remdesivir complex and computed the binding energies by the molecular mechanics-Poisson-Boltzmann surface area (MM-PBSA) scheme from last 50 ns trajectories.
T525 50303-50523 Sentence denotes Our study suggests that the complex formation of the SARS-CoV-2 RdRp and eight natural polyphenols is favoured by the intermolecular van der Waals and electrostatic interactions as well as nonpolar solvation free energy.
T526 50524-50611 Sentence denotes We have also investigated the hotspot residues controlling the receptor-ligand binding.
T527 50612-50803 Sentence denotes Finally, molecular dynamics simulation and MM-PBSA study reveals that EGCG, TF2a, TF2b, and TF3 possess a better binding affinity than the control drug remdesivir against the SARS-CoV-2 RdRp.
T528 50804-50944 Sentence denotes Further, we also looked at the ADME prediction, toxicity prediction, and target analysis to assess their druggability of the five compounds.
T529 50945-51119 Sentence denotes The obtained results strongly suggest that EGCG, TF2a, TF2b, and TF3 have a stable binding affinity towards RdRp of the SARS-CoV-2 with favourable pharmacokinetic properties.
T530 51120-51193 Sentence denotes These bioactive compounds exhibit broad ranges of therapeutic properties.
T531 51194-51308 Sentence denotes Therefore, we believe that these four natural polyphenols can act as potential inhibitors for the SARS-CoV-2 RdRp.
T532 51309-51434 Sentence denotes However, further in vitro and in vivo studies need to be carried out to validate their efficacy against SARS-CoV-2 infection.
T533 51436-51458 Sentence denotes Supplementary Material
T534 51459-51480 Sentence denotes Supplemental Material
T535 51481-51517 Sentence denotes Click here for additional data file.
T536 51519-51539 Sentence denotes Disclosure statement
T537 51540-51598 Sentence denotes The authors declare that there is no conflict of interest.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 3011-3016 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 3018-3027 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T3 3029-3048 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T4 3050-3060 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T5 3066-3077 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T6 4755-4764 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T7 22657-22666 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T8 23202-23211 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T9 45576-45581 Phenotype denotes falls http://purl.obolibrary.org/obo/HP_0002527

2_test

Id Subject Object Predicate Lexical cue
32720577-25810418-56195089 2915-2919 25810418 denotes 2015
32720577-32169481-56195090 2959-2963 32169481 denotes 2020
32720577-32399096-56195091 4226-4230 32399096 denotes 2020
32720577-25197083-56195092 4248-4252 25197083 denotes 2014
32720577-30324891-56195093 4817-4821 30324891 denotes 2019
32720577-28164720-56195094 4842-4846 28164720 denotes 2017
32720577-31507560-56195095 5226-5230 31507560 denotes 2019
32720577-24872930-56195096 6163-6167 24872930 denotes 2014
32720577-25053847-56195097 6460-6464 25053847 denotes 2014
32720577-16137775-56195098 6635-6639 16137775 denotes 2005
32720577-19537794-56195099 6913-6917 19537794 denotes 2009
32720577-20025206-56195100 6936-6940 20025206 denotes 2009
32720577-19399780-56195101 9175-9179 19399780 denotes 2009
32720577-30371825-56195102 9771-9775 30371825 denotes 2019
32720577-15264254-56195103 9929-9933 15264254 denotes 2004
32720577-7630882-56195104 13470-13474 7630882 denotes 1995
32720577-31656913-56195105 14426-14430 31656913 denotes 2019
32720577-26574453-56195106 14570-14574 26574453 denotes 2015
32720577-15116359-56195107 14600-14604 15116359 denotes 2004
32720577-12395429-56195108 14685-14689 12395429 denotes 2002
32720577-11457149-56195109 14753-14757 11457149 denotes 2001
32720577-15549884-56195110 14845-14849 15549884 denotes 2004
32720577-1515543-56195111 15430-15434 1515543 denotes 1992
32720577-26583988-56195112 16762-16766 26583988 denotes 2013
32720577-31017050-56195113 17104-17108 31017050 denotes 2020
32720577-17628098-56195114 17129-17133 17628098 denotes 2007
32720577-17503456-56195115 17153-17157 17503456 denotes 2007
32720577-21595427-56195116 17171-17175 21595427 denotes 2011
32720577-23614718-56195117 17177-17181 23614718 denotes 2013
32720577-11123888-56195121 17241-17245 11123888 denotes 2000
32720577-32149220-56195122 17259-17263 32149220 denotes 2020
32720577-16458552-56195123 17278-17282 16458552 denotes 2006
32720577-25860834-56195124 18605-18609 25860834 denotes 2015
32720577-24792161-56195125 19061-19065 24792161 denotes 2014
32720577-30298133-56195126 22493-22497 30298133 denotes 2018
32720577-30485282-56195127 22722-22726 30485282 denotes 2018
32720577-18089727-56195128 22895-22899 18089727 denotes 2008
32720577-17970592-56195129 23046-23050 17970592 denotes 2007
32720577-22578462-56195130 23162-23166 22578462 denotes 2012
32720577-25053847-56195131 23285-23289 25053847 denotes 2014
32720577-23344793-56195132 42249-42253 23344793 denotes 2013
32720577-15958649-56195133 44172-44176 15958649 denotes 2005