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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1928-1933 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T2 2380-2384 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T3 3158-3163 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T4 3315-3320 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 4296-4302 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T6 6100-6103 Body_part denotes leg http://purl.org/sig/ont/fma/fma24979
T7 6114-6119 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T8 6910-6915 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T9 7577-7582 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1928-1933 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T2 2380-2384 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T3 3158-3163 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 3315-3320 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 6100-6103 Body_part denotes leg http://purl.obolibrary.org/obo/UBERON_0000978
T6 6114-6119 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T7 6910-6915 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 7577-7582 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 103-127 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 129-137 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 278-286 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 489-497 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 720-728 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 961-969 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1314-1322 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1550-1558 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1928-1940 Disease denotes heart attack http://purl.obolibrary.org/obo/MONDO_0005068
T12 2147-2155 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2643-2651 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 3575-3583 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 3885-3888 Disease denotes ARB http://purl.obolibrary.org/obo/MONDO_0012733
T16 3937-3945 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 4252-4260 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 4649-4657 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 5035-5043 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 5306-5314 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 6114-6127 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T22 6845-6853 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 6854-6863 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 7304-7309 Disease denotes wound http://purl.obolibrary.org/obo/MONDO_0021178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 507-510 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 801-806 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T3 865-866 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 881-886 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T5 997-998 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1136-1139 http://purl.obolibrary.org/obo/CLO_0001755 denotes ask
T7 1341-1342 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1397-1398 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1719-1721 http://purl.obolibrary.org/obo/CLO_0050475 denotes my
T10 1741-1742 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1780-1782 http://purl.obolibrary.org/obo/CLO_0050475 denotes my
T12 1926-1927 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1928-1933 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T14 1928-1933 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T15 1928-1933 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T16 1928-1933 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T17 2120-2121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2199-2200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2424-2425 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2885-2886 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3158-3163 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T22 3211-3217 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T23 3315-3320 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T24 3911-3921 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T25 4403-4404 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 5091-5092 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 5196-5197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 5611-5612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 6012-6013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 6100-6103 http://www.ebi.ac.uk/efo/EFO_0001411 denotes leg
T31 6114-6119 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T32 6114-6119 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T33 6114-6119 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T34 6114-6119 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T35 6346-6347 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 6553-6556 http://purl.obolibrary.org/obo/CLO_0001755 denotes ask
T37 6671-6676 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T38 6704-6705 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 6737-6738 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 6750-6754 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T41 6785-6788 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T42 6910-6915 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T43 6910-6915 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T44 7256-7257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 7302-7303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 7349-7354 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T47 7577-7582 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T48 7577-7582 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T49 7577-7582 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T50 7577-7582 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T51 7805-7806 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2432-2437 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 3743-3754 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T3 3759-3771 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T4 3872-3881 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T5 7330-7333 Chemical denotes ECG http://purl.obolibrary.org/obo/CHEBI_70255
T6 7403-7405 Chemical denotes GP http://purl.obolibrary.org/obo/CHEBI_70744
T7 7422-7424 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807

TEST0

Id Subject Object Predicate Lexical cue
32323572-112-117-9063 5956-5957 ["31067981"] denotes 2

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 811-819 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T2 4138-4147 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour
T3 7621-7630 http://purl.obolibrary.org/obo/GO_0051235 denotes retention

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-148 Sentence denotes Never before have so many healthcare professionals been in the daily news worldwide as now, during the coronavirus disease 2019 (COVID-19) pandemic.
T4 149-428 Sentence denotes Hospitals are intensifying their resources for patients in need of intensive care and respiratory support, converting wards into COVID-19 units and, at the same time, stopping or restricting non-life threatening diagnostic procedures and treatment, for instance elective surgery.
T5 429-592 Sentence denotes For the healthcare professionals working in cardiology, the COVID-19 pandemic has many consequences that might not be directly visible in day-to-day news coverage.
T6 593-850 Sentence denotes Still, we struggle with similar issues in many countries around the world and this editorial addresses some aspects related to COVID-19 with the goal of enlarging our feelings of unity and solidarity in this field and learning from each other’s experiences.
T7 851-970 Sentence denotes Cardiology is a broad medical field including both acute and chronic aspects of care that are all affected by COVID-19.
T8 971-1096 Sentence denotes For healthcare providers, a lot of flexibility is asked for because of changes in schedules, job assignments, workplace, etc.
T9 1097-1257 Sentence denotes But at the same time, cardiac patients ask for stability and security in care too; patients still need adequate diagnostics, treatment, education and follow-up.
T10 1259-1331 Sentence denotes Challenges to cardiac patients and families during the COVID-19 pandemic
T11 1332-1617 Sentence denotes Although a lot of patients can be managed well with support from a distance and are practising optimal self-care, many cardiac patients have problems and worries that are especially caused by the restrictions that the COVID-19 pandemic lays on society as well as the healthcare system.
T12 1618-1635 Sentence denotes Some of them are:
T13 1636-1700 Sentence denotes - Worrying about delayed or cancelled diagnostics and treatment.
T14 1701-1815 Sentence denotes For example, will my ICD be replaced in a timely manner or is it safe to delay my intervention or cardiac surgery.
T15 1816-1941 Sentence denotes Others worry about their diagnostic angiogram that is postponed and wonder if it is safe or if they will have a heart attack.
T16 1942-2156 Sentence denotes - Worrying about optimal care and readmission when out-patient follow-up visits are postponed or delayed, or when they are not admitted to hospital or discharged earlier than in a normal situation without COVID-19.
T17 2157-2483 Sentence denotes - Feeling extra vulnerable and anxious as a cardiac patient and being advised of the need for total social distancing since they are at risk of becoming very ill or might die if affected by the coronavirus, or on the other hand feeling frustrated by being considered a ‘risk group’, while not feeling different than yesterday.
T18 2484-2606 Sentence denotes - Being restricted in the ability to exercise in, for example, the rehabilitation centre at the hospital or the local gym.
T19 2607-2743 Sentence denotes - Being afraid to get infected with COVID-19 and not knowing how to handle daily issues (for instance, what to disinfect and how often).
T20 2744-2897 Sentence denotes - Becoming angry and frightened when others do not adhere to advice given by the government and healthcare authorities (for instance keeping a distance).
T21 2898-3088 Sentence denotes - Feeling anxious and stressed when met by healthcare professionals in protective clothing or when met by healthcare professionals with no protection because of lack of protective equipment.
T22 3089-3273 Sentence denotes - Worrying about deterioration while having acute severe symptoms of chest pain and shortness of breath and needing to be tested before receiving acute treatment or being hospitalised.
T23 3274-3412 Sentence denotes - Delaying seeking healthcare with acute chest pain and not knowing if their complaints are severe enough to burden the healthcare system.
T24 3413-3508 Sentence denotes - Worrying about if there will be enough resources to be treated with for example an acute PCI.
T25 3509-3617 Sentence denotes - Getting worried or feeling panic from browsing the Internet for COVID-19 information without any guidance.
T26 3618-3772 Sentence denotes - Having no realistic insight into the situation and feeling strong and immune, for instance feeling unrealistically safe on antibiotics and prednisolone.
T27 3773-3946 Sentence denotes - Wondering about whether they should increase, stop or decrease their medications for example ACE-inhibitor or ARB or do other self-care activities if infected by COVID-19.
T28 3948-3994 Sentence denotes Challenges to cardiac healthcare professionals
T29 3995-4148 Sentence denotes Healthcare professionals need to stay updated constantly and adapt their advice to patients and also change their own professional and private behaviour.
T30 4149-4310 Sentence denotes Some of our colleagues need to stay at home because of social distance restrictions on family members, COVID-19 symptoms, preventive quarantine or mental stress.
T31 4311-4402 Sentence denotes Some colleagues are afraid to go to work in case of endangering themselves or their family.
T32 4403-4746 Sentence denotes A substantial number of professionals working in the departments of cardiology and cardiothoracic surgery are preparing to alter (have already altered) their daily clinical work, some have experienced having their ward rebuilt to be suitable for COVID-19 patients, some wards have closed completely to relocate staff to other acute care units.
T33 4747-4851 Sentence denotes Staff are educated to take care of other patient groups than they usually treat (and have expertise in).
T34 4852-4920 Sentence denotes ICUs are reorganised and rebuilt to the maximum of respiratory beds.
T35 4921-5087 Sentence denotes Healthcare providers from medical, cardiology and cardiothoracic ICUs create large teams that can work across ICU COVID-19 units with similar equipment and protocols.
T36 5088-5341 Sentence denotes In a lot of cardiology out-patient clinics, obvious changes include moving to distance follow-up instead of a clinic visit and also extending the length of follow-up phone calls, since many patients want to talk about COVID-19 and what it means to them.
T37 5342-5500 Sentence denotes In some hospitals, the pacemaker control period is extended from bi- or tri-monthly to yearly, most angiograms and electrophysiology procedures are cancelled.
T38 5501-5660 Sentence denotes ICDs are monitored using tele-monitoring systems, preventing patients from coming to hospital after receiving a shock therapy and reassuring them by telephone.
T39 5661-5843 Sentence denotes It is amazing how quickly telecare and distance monitoring have become almost ‘the new normal’ and how flexible patient and healthcare professionals are in adopting these practices.1
T40 5844-6216 Sentence denotes However, specific challenges of distance follow-up have also become painfully clear and need creative solutions.2 For example, it is more difficult to estimate whether a newly referred patient or his or her family can recognise signs and symptoms, such as leg oedema in heart failure patients, or whether they are able to decide if it is necessary to come to the hospital.
T41 6217-6401 Sentence denotes In addition, in patients with visual or auditory impairments, it can be difficult to change medication by phone, especially when a patient does not have email or cannot read very well.
T42 6402-6594 Sentence denotes For patients who are very lonely and feel socially isolated, and/or elderly patients, extra telephone contact with the clinic can be very important to ask questions and help to solve problems.
T43 6595-6714 Sentence denotes Uptitration of medication can be complicated without appropriate laboratory tests or physical examination of a patient.
T44 6715-7040 Sentence denotes Every time one orders a laboratory test (at home or in an office) one has to balance the risk of exposing the patient to possible COVID-19 infection (or the healthcare professional in taking the blood) yet really needing the laboratory value to adapt medication, for example to make that last step in an uptitration schedule.
T45 7042-7073 Sentence denotes Valuable moments and creativity
T46 7074-7160 Sentence denotes Professionals and patients are constantly trying to find practical solutions, such as:
T47 7161-7320 Sentence denotes - Use of video conferencing with patients or their family or, if this is too difficult, use of a picture on the phone to show, for instance, a wound or oedema.
T48 7321-7426 Sentence denotes - Having ECG and laboratory tests done close to the patients (for instance at the GP because of fast AF).
T49 7427-7468 Sentence denotes - More contact by email and regular mail.
T50 7469-7510 Sentence denotes - Closer collaboration with primary care.
T51 7511-7635 Sentence denotes - Sending information about websites where people can see how the heart works, what happens in cases of fluid retention etc.
T52 7636-7773 Sentence denotes - Emphasis that patients and their family can contact the clinics and, when necessary, they can come to the hospital and will be treated.
T53 7774-7884 Sentence denotes Meanwhile, there appears to be a collaboration within and between disciplines and professions as never before.
T54 7885-8034 Sentence denotes All healthcare workers must adapt to this new situation, and this is not only accompanied by fear and stress, but also by solidarity and heroic work.
T55 8035-8121 Sentence denotes Similarly, in talking to patients and family members, valuable moments can also occur.
T56 8122-8250 Sentence denotes For example, talking about life and death seems to be easier for some patients and family members in this exceptional situation.
T57 8251-8392 Sentence denotes While patients feel much more vulnerable, healthcare workers in cardiology need to give flexible and secure patient care on an optimal level.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1928-1940 Phenotype denotes heart attack http://purl.obolibrary.org/obo/HP_0001658
T2 3158-3168 Phenotype denotes chest pain http://purl.obolibrary.org/obo/HP_0100749
T3 3173-3192 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T4 3315-3325 Phenotype denotes chest pain http://purl.obolibrary.org/obo/HP_0100749
T5 5613-5618 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T6 6104-6110 Phenotype denotes oedema http://purl.obolibrary.org/obo/HP_0000969
T7 6114-6127 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T8 7313-7319 Phenotype denotes oedema http://purl.obolibrary.org/obo/HP_0000969
T9 7615-7630 Phenotype denotes fluid retention http://purl.obolibrary.org/obo/HP_0000969

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
8 196-204 Species denotes patients Tax:9606
9 103-127 Disease denotes coronavirus disease 2019 MESH:C000657245
10 129-137 Disease denotes COVID-19 MESH:C000657245
11 278-286 Disease denotes COVID-19 MESH:C000657245
14 489-497 Disease denotes COVID-19 MESH:C000657245
15 720-728 Disease denotes COVID-19 MESH:C000657245
19 1127-1135 Species denotes patients Tax:9606
20 1180-1188 Species denotes patients Tax:9606
21 961-969 Disease denotes COVID-19 MESH:C000657245
24 1281-1289 Species denotes patients Tax:9606
25 1314-1322 Disease denotes COVID-19 MESH:C000657245
29 1350-1358 Species denotes patients Tax:9606
30 1459-1467 Species denotes patients Tax:9606
31 1550-1558 Disease denotes COVID-19 MESH:C000657245
34 1997-2004 Species denotes patient Tax:9606
35 2147-2155 Disease denotes COVID-19 MESH:C000657245
39 2209-2216 Species denotes patient Tax:9606
40 2351-2362 Species denotes coronavirus Tax:11118
41 2188-2195 Disease denotes anxious MESH:D001007
44 2629-2637 Disease denotes infected MESH:D007239
45 2643-2651 Disease denotes COVID-19 MESH:C000657245
47 2908-2915 Disease denotes anxious MESH:D001007
50 3158-3168 Disease denotes chest pain MESH:D002637
51 3173-3192 Disease denotes shortness of breath MESH:D004417
53 3315-3325 Disease denotes chest pain MESH:D002637
55 3575-3583 Disease denotes COVID-19 MESH:C000657245
57 3759-3771 Chemical denotes prednisolone MESH:D011239
61 3868-3871 Gene denotes ACE Gene:1636
62 3925-3933 Disease denotes infected MESH:D007239
63 3937-3945 Disease denotes COVID-19 MESH:C000657245
67 4078-4086 Species denotes patients Tax:9606
68 4252-4260 Disease denotes COVID-19 MESH:C000657245
69 4303-4309 Disease denotes stress MESH:D000079225
74 4658-4666 Species denotes patients Tax:9606
75 4788-4795 Species denotes patient Tax:9606
76 4649-4657 Disease denotes COVID-19 MESH:C000657245
77 5035-5043 Disease denotes COVID-19 MESH:C000657245
84 5115-5122 Species denotes patient Tax:9606
85 5278-5286 Species denotes patients Tax:9606
86 5562-5570 Species denotes patients Tax:9606
87 5773-5780 Species denotes patient Tax:9606
88 5306-5314 Disease denotes COVID-19 MESH:C000657245
89 5501-5505 Disease denotes ICDs
98 6029-6036 Species denotes patient Tax:9606
99 6128-6136 Species denotes patients Tax:9606
100 6233-6241 Species denotes patients Tax:9606
101 6348-6355 Species denotes patient Tax:9606
102 6406-6414 Species denotes patients Tax:9606
103 6478-6486 Species denotes patients Tax:9606
104 6100-6127 Disease denotes leg oedema in heart failure MESH:D006333
105 6247-6277 Disease denotes visual or auditory impairments MESH:D014786
110 6706-6713 Species denotes patient Tax:9606
111 6825-6832 Species denotes patient Tax:9606
112 6845-6853 Disease denotes COVID-19 MESH:C000657245
113 6854-6863 Disease denotes infection MESH:D007239
115 7092-7100 Species denotes patients Tax:9606
118 7194-7202 Species denotes patients Tax:9606
119 7313-7319 Disease denotes oedema MESH:D004487
122 7373-7381 Species denotes patients Tax:9606
123 7422-7424 Disease denotes AF MESH:D001281
125 7554-7560 Species denotes people Tax:9606
127 7652-7660 Species denotes patients Tax:9606
134 8060-8068 Species denotes patients Tax:9606
135 8192-8200 Species denotes patients Tax:9606
136 8257-8265 Species denotes patients Tax:9606
137 8359-8366 Species denotes patient Tax:9606
138 7987-7993 Disease denotes stress MESH:D000079225
139 8158-8163 Disease denotes death MESH:D003643

0_colil

Id Subject Object Predicate Lexical cue
32323572-31067981-9063 5956-5957 31067981 denotes 2

2_test

Id Subject Object Predicate Lexical cue
32323572-31067981-28906742 5956-5957 31067981 denotes 2

MyTest

Id Subject Object Predicate Lexical cue
32323572-31067981-28906742 5956-5958 31067981 denotes 2