PMC:7436876 / 128-2276
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T3 | 95-102 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T4 | 206-213 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T5 | 539-546 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T6 | 786-791 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T7 | 1286-1293 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T8 | 1407-1414 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T9 | 1541-1548 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T10 | 1649-1654 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T11 | 1736-1743 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
| T12 | 1754-1759 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T13 | 1905-1912 | Body_part | denotes | abdomen | http://purl.org/sig/ont/fma/fma9577 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T3 | 95-102 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T4 | 206-213 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T5 | 539-546 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T6 | 1115-1121 | Body_part | denotes | vessel | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T7 | 1167-1174 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T8 | 1286-1293 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T9 | 1407-1414 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T10 | 1541-1548 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T11 | 1649-1654 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T12 | 1736-1743 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T13 | 1754-1759 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T14 | 1905-1912 | Body_part | denotes | abdomen | http://purl.obolibrary.org/obo/UBERON_0000916 |
| T15 | 1947-1954 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T3 | 118-126 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T4 | 162-166 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T5 | 173-182 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T6 | 554-562 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T7 | 808-812 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T8 | 824-828 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T9 | 834-843 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T10 | 874-884 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
| T11 | 1012-1024 | Disease | denotes | pancreatitis | http://purl.obolibrary.org/obo/MONDO_0004982 |
| T12 | 1026-1037 | Disease | denotes | peritonitis | http://purl.obolibrary.org/obo/MONDO_0004522 |
| T13 | 1063-1070 | Disease | denotes | colitis | http://purl.obolibrary.org/obo/MONDO_0005292 |
| T14 | 1122-1130 | Disease | denotes | ischemia | http://purl.obolibrary.org/obo/MONDO_0005053 |
| T15 | 1240-1248 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T16 | 1433-1437 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T17 | 1444-1453 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T18 | 1676-1684 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T19 | 2066-2076 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 95-102 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T6 | 95-102 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T7 | 206-213 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T8 | 206-213 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T9 | 539-546 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T10 | 539-546 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T11 | 715-716 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T12 | 786-791 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T13 | 1039-1046 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonic |
| T14 | 1115-1121 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessel |
| T15 | 1167-1174 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
| T16 | 1185-1197 | http://purl.obolibrary.org/obo/UBERON_0000026 | denotes | appendagitis |
| T17 | 1185-1197 | http://www.ebi.ac.uk/efo/EFO_0000799 | denotes | appendagitis |
| T18 | 1286-1293 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T19 | 1286-1293 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T20 | 1354-1355 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T21 | 1407-1414 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T22 | 1407-1414 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T23 | 1541-1548 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T24 | 1541-1548 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T25 | 1559-1565 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T26 | 1736-1743 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T27 | 1736-1743 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T28 | 1754-1759 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T29 | 1883-1884 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T30 | 1905-1912 | http://purl.obolibrary.org/obo/UBERON_0000916 | denotes | abdomen |
| T31 | 1905-1912 | http://www.ebi.ac.uk/efo/EFO_0000968 | denotes | abdomen |
| T32 | 1914-1922 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focusing |
| T33 | 1947-1954 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 318-329 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 373-385 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 0-134 | Sentence | denotes | Lima et al.'s recently published paper discussed the role of imaging in the diagnosis of acute abdomen cases amid the COVID‐19 era 1 . |
| T5 | 135-282 | Sentence | denotes | Saeed et al. reported that SARS‐CoV‐2 infection could lead to an acute abdomen‐like presentation in the absence of identifiable surgical causes 2 . |
| T6 | 283-401 | Sentence | denotes | Both authors discussed the role of angiotensin‐converting‐enzyme‐2 (ACE2) receptor in the pathogenesis of this entity. |
| T7 | 402-473 | Sentence | denotes | Our experience with similar cases makes us concur with both authors 3 . |
| T8 | 474-639 | Sentence | denotes | Herein we will summarize the likely non‐surgical causes of acute abdomen in the COVID‐19 era and discuss important management points when dealing with such patients. |
| T9 | 640-714 | Sentence | denotes | The causes can be divided into respiratory and non‐respiratory (Fig. 1 ). |
| T10 | 715-819 | Sentence | denotes | A respiratory cause for such presentation is pain referring from lower lungs involved by the SARS‐CoV‐2. |
| T11 | 820-981 | Sentence | denotes | The SARS‐CoV2 infection seems to increase the risk of thrombosis 4 ; thus, the non‐respiratory causes can be further classified as thrombotic and non‐thrombotic. |
| T12 | 982-1231 | Sentence | denotes | Non‐thrombotic causes include pancreatitis, peritonitis, colonic distension, and colitis, while thrombotic etiologies are mesenteric vessel ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis, and omental infarcts (Fig. 1 ). |
| T13 | 1232-1502 | Sentence | denotes | Fig. 1 COVID‐19‐related non‐surgical causes of acute abdomen With the causes mentioned above in mind, it is wise to keep a broad differential of non‐surgical causes of acute abdomen in the setting of SARS‐CoV‐2 infection, to avoid unnecessary surgical interventions 5 . |
| T14 | 1503-1639 | Sentence | denotes | Any patients presenting with an acute abdomen should be tested and retested for SRAS‐CoV‐2, even in the absence of respiratory symptoms. |
| T15 | 1640-1698 | Sentence | denotes | Elevated serum ferritin may support COVID‐19 diagnosis 3 . |
| T16 | 1699-1844 | Sentence | denotes | Computed tomography (CT) scan of the abdomen and lower chest will be valuable in ruling some of the causes and identifying pulmonary involvement. |
| T17 | 1845-1955 | Sentence | denotes | If unrevealing, we suggest performing a CT angiogram of the abdomen, focusing on mesenteric and renal vessels. |
| T18 | 1956-2148 | Sentence | denotes | We believe in the role of multidisciplinary meetings (MDT), including radiologists, surgeons, internists, and infectious experts, to tailor an individualized, case‐by‐case management approach. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 760-764 | Phenotype | denotes | pain | http://purl.obolibrary.org/obo/HP_0012531 |
| T2 | 1012-1024 | Phenotype | denotes | pancreatitis | http://purl.obolibrary.org/obo/HP_0001733 |
| T3 | 1026-1037 | Phenotype | denotes | peritonitis | http://purl.obolibrary.org/obo/HP_0002586 |
| T4 | 1063-1070 | Phenotype | denotes | colitis | http://purl.obolibrary.org/obo/HP_0002583 |
| T5 | 1640-1663 | Phenotype | denotes | Elevated serum ferritin | http://purl.obolibrary.org/obo/HP_0003281 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 8 | 318-349 | Gene | denotes | angiotensin‐converting‐enzyme‐2 | Gene:59272 |
| 9 | 351-355 | Gene | denotes | ACE2 | Gene:59272 |
| 10 | 630-638 | Species | denotes | patients | Tax:9606 |
| 11 | 118-126 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 12 | 167-182 | Disease | denotes | CoV‐2 infection | MESH:C000657245 |
| 13 | 554-562 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 25 | 808-818 | Species | denotes | SARS‐CoV‐2 | Tax:2697049 |
| 26 | 824-833 | Species | denotes | SARS‐CoV2 | Tax:2697049 |
| 27 | 760-764 | Disease | denotes | pain | MESH:D010146 |
| 28 | 834-843 | Disease | denotes | infection | MESH:D007239 |
| 29 | 874-884 | Disease | denotes | thrombosis | MESH:D013927 |
| 30 | 1012-1024 | Disease | denotes | pancreatitis | MESH:D010195 |
| 31 | 1026-1037 | Disease | denotes | peritonitis | MESH:D010534 |
| 32 | 1039-1046 | Disease | denotes | colonic | MESH:D003110 |
| 33 | 1063-1070 | Disease | denotes | colitis | MESH:D003092 |
| 34 | 1122-1197 | Disease | denotes | ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis | MESH:D065666 |
| 35 | 1203-1219 | Disease | denotes | omental infarcts | MESH:D015436 |
| 37 | 1240-1248 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 43 | 1507-1515 | Species | denotes | patients | Tax:9606 |
| 44 | 1588-1593 | Species | denotes | CoV‐2 | Tax:2697049 |
| 45 | 1433-1453 | Disease | denotes | SARS‐CoV‐2 infection | MESH:C000657245 |
| 46 | 1618-1638 | Disease | denotes | respiratory symptoms | MESH:D012818 |
| 47 | 1676-1684 | Disease | denotes | COVID‐19 | MESH:C000657245 |