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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 104-111 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T4 215-222 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T5 548-555 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T6 795-800 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T7 1295-1302 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T8 1416-1423 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T9 1550-1557 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T10 1658-1663 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T11 1745-1752 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T12 1763-1768 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 1914-1921 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 104-111 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T4 215-222 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T5 548-555 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T6 1124-1130 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T7 1176-1183 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T8 1295-1302 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T9 1416-1423 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T10 1550-1557 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T11 1658-1663 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 1745-1752 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T13 1763-1768 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 1914-1921 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T15 1956-1963 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 127-135 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 171-175 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 182-191 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 563-571 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 817-821 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 833-837 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 843-852 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 883-893 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T11 1021-1033 Disease denotes pancreatitis http://purl.obolibrary.org/obo/MONDO_0004982
T12 1035-1046 Disease denotes peritonitis http://purl.obolibrary.org/obo/MONDO_0004522
T13 1072-1079 Disease denotes colitis http://purl.obolibrary.org/obo/MONDO_0005292
T14 1131-1139 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T15 1249-1257 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1442-1446 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1453-1462 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 1685-1693 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 2075-2085 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T5 104-111 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T6 104-111 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T7 215-222 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T8 215-222 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T9 548-555 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T10 548-555 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T11 724-725 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T12 795-800 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T13 1048-1055 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonic
T14 1124-1130 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T15 1176-1183 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T16 1194-1206 http://purl.obolibrary.org/obo/UBERON_0000026 denotes appendagitis
T17 1194-1206 http://www.ebi.ac.uk/efo/EFO_0000799 denotes appendagitis
T18 1295-1302 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T19 1295-1302 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T20 1363-1364 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1416-1423 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T22 1416-1423 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T23 1550-1557 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T24 1550-1557 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T25 1568-1574 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T26 1745-1752 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T27 1745-1752 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T28 1763-1768 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T29 1892-1893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1914-1921 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T31 1914-1921 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T32 1923-1931 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T33 1956-1963 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 327-338 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 382-394 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 1-7 Sentence denotes Editor
T4 9-143 Sentence denotes Lima et al.'s recently published paper discussed the role of imaging in the diagnosis of acute abdomen cases amid the COVID‐19 era 1 .
T5 144-291 Sentence denotes Saeed et al. reported that SARS‐CoV‐2 infection could lead to an acute abdomen‐like presentation in the absence of identifiable surgical causes 2 .
T6 292-410 Sentence denotes Both authors discussed the role of angiotensin‐converting‐enzyme‐2 (ACE2) receptor in the pathogenesis of this entity.
T7 411-482 Sentence denotes Our experience with similar cases makes us concur with both authors 3 .
T8 483-648 Sentence denotes Herein we will summarize the likely non‐surgical causes of acute abdomen in the COVID‐19 era and discuss important management points when dealing with such patients.
T9 649-723 Sentence denotes The causes can be divided into respiratory and non‐respiratory (Fig.  1 ).
T10 724-828 Sentence denotes A respiratory cause for such presentation is pain referring from lower lungs involved by the SARS‐CoV‐2.
T11 829-990 Sentence denotes The SARS‐CoV2 infection seems to increase the risk of thrombosis 4 ; thus, the non‐respiratory causes can be further classified as thrombotic and non‐thrombotic.
T12 991-1240 Sentence denotes Non‐thrombotic causes include pancreatitis, peritonitis, colonic distension, and colitis, while thrombotic etiologies are mesenteric vessel ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis, and omental infarcts (Fig.  1 ).
T13 1241-1511 Sentence denotes Fig. 1 COVID‐19‐related non‐surgical causes of acute abdomen With the causes mentioned above in mind, it is wise to keep a broad differential of non‐surgical causes of acute abdomen in the setting of SARS‐CoV‐2 infection, to avoid unnecessary surgical interventions 5 .
T14 1512-1648 Sentence denotes Any patients presenting with an acute abdomen should be tested and retested for SRAS‐CoV‐2, even in the absence of respiratory symptoms.
T15 1649-1707 Sentence denotes Elevated serum ferritin may support COVID‐19 diagnosis 3 .
T16 1708-1853 Sentence denotes Computed tomography (CT) scan of the abdomen and lower chest will be valuable in ruling some of the causes and identifying pulmonary involvement.
T17 1854-1964 Sentence denotes If unrevealing, we suggest performing a CT angiogram of the abdomen, focusing on mesenteric and renal vessels.
T18 1965-2157 Sentence denotes We believe in the role of multidisciplinary meetings (MDT), including radiologists, surgeons, internists, and infectious experts, to tailor an individualized, case‐by‐case management approach.
T19 2159-2180 Sentence denotes Author's contribution
T20 2181-2228 Sentence denotes MFHM and KA contributed equally to this letter.
T21 2229-2312 Sentence denotes KA and MFHM wrote the initial and the final version and approved it for submission.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 769-773 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T2 1021-1033 Phenotype denotes pancreatitis http://purl.obolibrary.org/obo/HP_0001733
T3 1035-1046 Phenotype denotes peritonitis http://purl.obolibrary.org/obo/HP_0002586
T4 1072-1079 Phenotype denotes colitis http://purl.obolibrary.org/obo/HP_0002583
T5 1649-1672 Phenotype denotes Elevated serum ferritin http://purl.obolibrary.org/obo/HP_0003281

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
8 327-358 Gene denotes angiotensin‐converting‐enzyme‐2 Gene:59272
9 360-364 Gene denotes ACE2 Gene:59272
10 639-647 Species denotes patients Tax:9606
11 127-135 Disease denotes COVID‐19 MESH:C000657245
12 176-191 Disease denotes CoV‐2 infection MESH:C000657245
13 563-571 Disease denotes COVID‐19 MESH:C000657245
25 817-827 Species denotes SARS‐CoV‐2 Tax:2697049
26 833-842 Species denotes SARS‐CoV2 Tax:2697049
27 769-773 Disease denotes pain MESH:D010146
28 843-852 Disease denotes infection MESH:D007239
29 883-893 Disease denotes thrombosis MESH:D013927
30 1021-1033 Disease denotes pancreatitis MESH:D010195
31 1035-1046 Disease denotes peritonitis MESH:D010534
32 1048-1055 Disease denotes colonic MESH:D003110
33 1072-1079 Disease denotes colitis MESH:D003092
34 1131-1206 Disease denotes ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis MESH:D065666
35 1212-1228 Disease denotes omental infarcts MESH:D015436
37 1249-1257 Disease denotes COVID‐19 MESH:C000657245
43 1516-1524 Species denotes patients Tax:9606
44 1597-1602 Species denotes CoV‐2 Tax:2697049
45 1442-1462 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
46 1627-1647 Disease denotes respiratory symptoms MESH:D012818
47 1685-1693 Disease denotes COVID‐19 MESH:C000657245