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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 6-13 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T2 110-117 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T3 223-230 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T4 334-341 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T5 667-674 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T6 914-919 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T7 1414-1421 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T8 1535-1542 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T9 1669-1676 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T10 1777-1782 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T11 1864-1871 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577
T12 1882-1887 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 2033-2040 Body_part denotes abdomen http://purl.org/sig/ont/fma/fma9577

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 6-13 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T2 110-117 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T3 223-230 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T4 334-341 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T5 667-674 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T6 1243-1249 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T7 1295-1302 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T8 1414-1421 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T9 1535-1542 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T10 1669-1676 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T11 1777-1782 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 1864-1871 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T13 1882-1887 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 2033-2040 Body_part denotes abdomen http://purl.obolibrary.org/obo/UBERON_0000916
T15 2075-2082 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 46-54 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 64-72 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 246-254 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 290-294 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 301-310 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 682-690 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 936-940 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 952-956 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 962-971 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1002-1012 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T11 1140-1152 Disease denotes pancreatitis http://purl.obolibrary.org/obo/MONDO_0004982
T12 1154-1165 Disease denotes peritonitis http://purl.obolibrary.org/obo/MONDO_0004522
T13 1191-1198 Disease denotes colitis http://purl.obolibrary.org/obo/MONDO_0005292
T14 1250-1258 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T15 1368-1376 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1561-1565 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1572-1581 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 1804-1812 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 2194-2204 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 6-13 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T2 6-13 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T3 110-117 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T4 110-117 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T5 223-230 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T6 223-230 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T7 334-341 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T8 334-341 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T9 667-674 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T10 667-674 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T11 843-844 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T12 914-919 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T13 1167-1174 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonic
T14 1243-1249 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T15 1295-1302 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T16 1313-1325 http://purl.obolibrary.org/obo/UBERON_0000026 denotes appendagitis
T17 1313-1325 http://www.ebi.ac.uk/efo/EFO_0000799 denotes appendagitis
T18 1414-1421 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T19 1414-1421 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T20 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1535-1542 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T22 1535-1542 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T23 1669-1676 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T24 1669-1676 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T25 1687-1693 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T26 1864-1871 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T27 1864-1871 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T28 1882-1887 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T29 2011-2012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 2033-2040 http://purl.obolibrary.org/obo/UBERON_0000916 denotes abdomen
T31 2033-2040 http://www.ebi.ac.uk/efo/EFO_0000968 denotes abdomen
T32 2042-2050 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T33 2075-2082 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 446-457 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 501-513 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-63 Sentence denotes Acute abdomen is not always surgical amid the COVID‐19 pandemic
T2 64-117 Sentence denotes COVID‐19 related‐non‐surgical causes of acute abdomen
T3 120-126 Sentence denotes Editor
T4 128-262 Sentence denotes Lima et al.'s recently published paper discussed the role of imaging in the diagnosis of acute abdomen cases amid the COVID‐19 era 1 .
T5 263-410 Sentence denotes Saeed et al. reported that SARS‐CoV‐2 infection could lead to an acute abdomen‐like presentation in the absence of identifiable surgical causes 2 .
T6 411-529 Sentence denotes Both authors discussed the role of angiotensin‐converting‐enzyme‐2 (ACE2) receptor in the pathogenesis of this entity.
T7 530-601 Sentence denotes Our experience with similar cases makes us concur with both authors 3 .
T8 602-767 Sentence denotes Herein we will summarize the likely non‐surgical causes of acute abdomen in the COVID‐19 era and discuss important management points when dealing with such patients.
T9 768-842 Sentence denotes The causes can be divided into respiratory and non‐respiratory (Fig.  1 ).
T10 843-947 Sentence denotes A respiratory cause for such presentation is pain referring from lower lungs involved by the SARS‐CoV‐2.
T11 948-1109 Sentence denotes The SARS‐CoV2 infection seems to increase the risk of thrombosis 4 ; thus, the non‐respiratory causes can be further classified as thrombotic and non‐thrombotic.
T12 1110-1359 Sentence denotes Non‐thrombotic causes include pancreatitis, peritonitis, colonic distension, and colitis, while thrombotic etiologies are mesenteric vessel ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis, and omental infarcts (Fig.  1 ).
T13 1360-1630 Sentence denotes Fig. 1 COVID‐19‐related non‐surgical causes of acute abdomen With the causes mentioned above in mind, it is wise to keep a broad differential of non‐surgical causes of acute abdomen in the setting of SARS‐CoV‐2 infection, to avoid unnecessary surgical interventions 5 .
T14 1631-1767 Sentence denotes Any patients presenting with an acute abdomen should be tested and retested for SRAS‐CoV‐2, even in the absence of respiratory symptoms.
T15 1768-1826 Sentence denotes Elevated serum ferritin may support COVID‐19 diagnosis 3 .
T16 1827-1972 Sentence denotes Computed tomography (CT) scan of the abdomen and lower chest will be valuable in ruling some of the causes and identifying pulmonary involvement.
T17 1973-2083 Sentence denotes If unrevealing, we suggest performing a CT angiogram of the abdomen, focusing on mesenteric and renal vessels.
T18 2084-2276 Sentence denotes We believe in the role of multidisciplinary meetings (MDT), including radiologists, surgeons, internists, and infectious experts, to tailor an individualized, case‐by‐case management approach.
T19 2278-2299 Sentence denotes Author's contribution
T20 2300-2347 Sentence denotes MFHM and KA contributed equally to this letter.
T21 2348-2431 Sentence denotes KA and MFHM wrote the initial and the final version and approved it for submission.
T22 2433-2448 Sentence denotes Acknowledgement
T23 2449-2544 Sentence denotes We acknowledge the editor and the editorial team members for their prompt review of the letter.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 888-892 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T2 1140-1152 Phenotype denotes pancreatitis http://purl.obolibrary.org/obo/HP_0001733
T3 1154-1165 Phenotype denotes peritonitis http://purl.obolibrary.org/obo/HP_0002586
T4 1191-1198 Phenotype denotes colitis http://purl.obolibrary.org/obo/HP_0002583
T5 1768-1791 Phenotype denotes Elevated serum ferritin http://purl.obolibrary.org/obo/HP_0003281

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 46-54 Disease denotes COVID‐19 MESH:C000657245
8 446-477 Gene denotes angiotensin‐converting‐enzyme‐2 Gene:59272
9 479-483 Gene denotes ACE2 Gene:59272
10 758-766 Species denotes patients Tax:9606
11 246-254 Disease denotes COVID‐19 MESH:C000657245
12 295-310 Disease denotes CoV‐2 infection MESH:C000657245
13 682-690 Disease denotes COVID‐19 MESH:C000657245
25 936-946 Species denotes SARS‐CoV‐2 Tax:2697049
26 952-961 Species denotes SARS‐CoV2 Tax:2697049
27 888-892 Disease denotes pain MESH:D010146
28 962-971 Disease denotes infection MESH:D007239
29 1002-1012 Disease denotes thrombosis MESH:D013927
30 1140-1152 Disease denotes pancreatitis MESH:D010195
31 1154-1165 Disease denotes peritonitis MESH:D010534
32 1167-1174 Disease denotes colonic MESH:D003110
33 1191-1198 Disease denotes colitis MESH:D003092
34 1250-1325 Disease denotes ischemia (occlusive or non‐occlusive), renal vessels infarcts, appendagitis MESH:D065666
35 1331-1347 Disease denotes omental infarcts MESH:D015436
37 1368-1376 Disease denotes COVID‐19 MESH:C000657245
43 1635-1643 Species denotes patients Tax:9606
44 1716-1721 Species denotes CoV‐2 Tax:2697049
45 1561-1581 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
46 1746-1766 Disease denotes respiratory symptoms MESH:D012818
47 1804-1812 Disease denotes COVID‐19 MESH:C000657245