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PMC:7435837 / 4972-6183 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T39 81-88 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 116-131 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T41 126-131 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T42 144-149 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T43 217-230 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784
T44 238-251 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784
T45 268-275 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T46 293-300 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T47 324-329 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T48 338-343 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T49 481-489 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T50 571-574 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T51 1053-1061 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T52 1100-1104 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T53 1205-1210 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 144-149 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 578-586 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T58 15-20 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T59 116-131 http://purl.obolibrary.org/obo/CL_0000451 denotes dendritic cells
T60 133-135 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T61 144-149 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T62 144-149 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T63 203-206 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T64 212-215 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T65 252-257 http://purl.obolibrary.org/obo/CLO_0007225 denotes label
T66 285-292 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T67 322-329 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T68 336-343 http://purl.obolibrary.org/obo/CL_0000084 denotes T-cells
T69 371-377 http://purl.obolibrary.org/obo/CLO_0007225 denotes labels
T70 412-419 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T71 442-445 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 592-597 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T73 925-930 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 1009-1014 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T75 1038-1043 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T76 1100-1104 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T77 1151-1152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 1187-1194 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T79 1205-1210 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T40 48-55 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T41 81-88 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T42 217-230 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396
T43 238-251 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396
T44 252-257 Chemical denotes label http://purl.obolibrary.org/obo/CHEBI_35209
T45 268-275 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T46 293-300 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T47 397-404 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T48 481-489 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T49 690-698 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T50 718-721 Chemical denotes GNA http://purl.obolibrary.org/obo/CHEBI_48015
T51 796-805 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T52 798-805 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T53 1053-1061 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 26-42 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
88 262-267 Gene denotes spike Gene:43740568
89 75-80 Gene denotes spike Gene:43740568
90 15-20 Species denotes human Tax:9606
91 63-74 Species denotes coronavirus Tax:11118
92 571-576 Species denotes HIV-1 Tax:11676
93 578-586 Species denotes SARS-CoV Tax:694009
94 592-613 Species denotes human cytomegalovirus Tax:10359
95 723-740 Species denotes Galanthus nivalis Tax:4670
96 1114-1127 Species denotes coronaviruses Tax:11118
97 48-55 Chemical denotes glycans MESH:D011134
98 169-175 Chemical denotes glycan MESH:D011134
99 217-230 Chemical denotes glycopeptides MESH:D006020
100 238-251 Chemical denotes glycopeptides MESH:D006020
101 466-472 Chemical denotes glycan MESH:D011134
102 796-805 Chemical denotes N-glycans
103 913-919 Chemical denotes glycan MESH:D011134

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 0-231 Sentence denotes As part of the human host immune responses, the glycans of the coronavirus spike protein subunits are recognized by dendritic cells [11] in the blood which binds to the glycan and subsequently expresses CD4+ and CD8+ glycopeptides.
T43 232-335 Sentence denotes These glycopeptides label the spike protein and this labeled protein is then presented to T-cells [12].
T44 336-438 Sentence denotes T-cells subsequently recognize the labels, phagocytose these antigen-marked viruses, and degrade them.
T45 439-614 Sentence denotes It has been found that the glycan-binding proteins, also known as lectins [5], can impart broad-spectrum binding properties against HIV-1, SARS-CoV, and human cytomegalovirus.
T46 615-753 Sentence denotes The lectin which is capable of showing broad interaction via oligomannosyl antigens is known as lectin GNA (Galanthus nivalis agglutinin).
T47 754-883 Sentence denotes The N-oligomannosyl cores are embedded in N-glycans which are commonly expressed on the surface of numerous viral pathogens [13].
T48 884-1050 Sentence denotes Once the lectin binds to the glycan, the virus structure may undergo conformational changes that result in the fusion of the virus and host to facilitate virus entry.
T49 1051-1133 Sentence denotes S-proteins are specifically responsible for host cell entry by coronaviruses [14].
T50 1134-1211 Sentence denotes Figure 1 depicts a simplified entry mechanism of the viruses into host cells.

2_test

Id Subject Object Predicate Lexical cue
32731428-18799140-71421251 133-135 18799140 denotes 11
32731428-32328406-71421252 331-333 32328406 denotes 12
32731428-24188132-71421253 514-515 24188132 denotes 5
32731428-25774492-71421254 879-881 25774492 denotes 13
32731428-16258152-71421255 1129-1131 16258152 denotes 14