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PMC:7417788 / 7733-8655 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T160 165-171 UBERON:0007023 denotes adults
T161 184-189 SO:0002031 denotes scRNA
T162 330-336 UBERON:0007023 denotes adults
T163 371-382 NCBITaxon:1 denotes individuals
T164 399-405 UBERON:0007023 denotes adults
T165 411-419 SP_7 denotes COVID-19
T166 460-471 NCBITaxon:1 denotes individuals
T167 488-494 UBERON:0007023 denotes adults
T168 510-518 SP_7 denotes COVID-19
T169 603-607 SO:0000704;GO:0010467 denotes gene
T170 608-618 GO:0010467 denotes expression
T171 629-634 SO:0002031 denotes scRNA
T172 758-769 GO:0042995 denotes projections
T173 848-858 GO:0010467 denotes expression
T174 877-881 SO:0000704 denotes gene
T91068 165-171 UBERON:0007023 denotes adults
T93824 184-189 SO:0002031 denotes scRNA
T43880 330-336 UBERON:0007023 denotes adults
T88710 371-382 NCBITaxon:1 denotes individuals
T77600 399-405 UBERON:0007023 denotes adults
T75290 411-419 SP_7 denotes COVID-19
T20843 460-471 NCBITaxon:1 denotes individuals
T1753 488-494 UBERON:0007023 denotes adults
T77198 510-518 SP_7 denotes COVID-19
T82106 603-607 SO:0000704;GO:0010467 denotes gene
T85334 608-618 GO:0010467 denotes expression
T20103 629-634 SO:0002031 denotes scRNA
T2266 758-769 GO:0042995 denotes projections
T35696 848-858 GO:0010467 denotes expression
T94423 877-881 SO:0000704 denotes gene

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T78 563-567 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T79 603-607 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T80 648-659 Body_part denotes chromosomal http://purl.org/sig/ont/fma/fma67093
T81 877-881 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T82 896-900 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T83 910-914 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 411-419 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 510-518 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 754-757 Disease denotes SNE http://purl.obolibrary.org/obo/MONDO_0018859

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T119 106-107 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T120 254-255 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T121 563-567 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T122 603-607 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T123 877-881 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T124 896-905 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T125 910-914 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 98-103 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T37 603-618 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-922 Sentence denotes Figure 1 Schematic illustration of the collection and data processing of PBMC from young and aged group. (A) Flowchart overview of PBMC collection in young and aged adults followed by scRNA-seq, mass cytometry, scATAC-seq and scTCR/BCR-seq experiments. (B) Schematic illustration of experimental cohorts; cohort-1: young and aged adults, cohort-2: young and aged healthy individuals, young and aged adults with COVID-19 onset, cohort-3: young and aged healthy individuals, young and aged adults recovered from COVID-19, matched with analysis as indicated: single-cell proteomic data from CyTOF studies, gene expression data from scRNA-seq studies, chromosomal accessibility data from scATAC-seq, and TCR and BCR repertoire data from scTCR/BCR-seq. (C) t-SNE projections of PBMCs derived from scRNA-seq data in cohort-1. (D) Heatmaps showing scaled expression of discriminative gene sets for each cell type and cell subset.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
80 700-703 Gene denotes TCR Gene:6962
81 708-711 Gene denotes BCR Gene:613
82 232-235 Gene denotes BCR Gene:613
83 739-742 Gene denotes BCR Gene:613
84 411-419 Disease denotes COVID-19 MESH:C000657245
85 510-518 Disease denotes COVID-19 MESH:C000657245