PMC:7417788 / 74655-75329
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1509 | 64-72 | CHEBI:28073;CHEBI:28073 | denotes | Chromium |
| T1510 | 337-339 | SO:0000028 | denotes | bp |
| T1511 | 416-421 | SO:0000150 | denotes | reads |
| T1512 | 496-504 | CHEBI:28073;CHEBI:28073 | denotes | Chromium |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T549 | 27-32 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T550 | 80-84 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T551 | 426-430 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T552 | 664-668 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1205 | 27-32 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1206 | 80-84 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T1207 | 422-430 | http://purl.obolibrary.org/obo/CLO_0008190 | denotes | per cell |
| T1208 | 569-579 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | instrument |
| T1209 | 664-668 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T92477 | 64-72 | Chemical | denotes | Chromium | http://purl.obolibrary.org/obo/CHEBI_28073 |
| T39474 | 496-504 | Chemical | denotes | Chromium | http://purl.obolibrary.org/obo/CHEBI_28073 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T424 | 0-139 | Sentence | denotes | scATAC-seq targeting 4,000 cells per sample was performed using Chromium Single Cell ATAC Library and Gel Bead kit (10x Genomics, 1000110). |
| T425 | 140-208 | Sentence | denotes | Each sample library was uniquely barcoded and quantified by RT-qPCR. |
| T426 | 209-442 | Sentence | denotes | Libraries were then pooled and loaded on an Illumina Novaseq 6000 sequencer (3.5 pmol/L loading concentration, 50 + 8 + 16 + 49 bp read configuration) and sequenced to either 90% saturation or 30,000 unique reads per cell on average. |
| T427 | 443-674 | Sentence | denotes | All protocols to generate scATAC-seq data on the 10x Chromium platform, including sample preparation, library preparation and instrument and sequencing settings, are available here: https://support.10xgenomics.com/single-cell-atac. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1502 | 111-114 | Gene | denotes | kit | Gene:3815 |
| 1503 | 496-504 | Chemical | denotes | Chromium | MESH:D002857 |