PMC:7417788 / 72390-73294
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1506 | 674-678 | PR:000001006 | denotes | CD45 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T537 | 643-648 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T538 | 709-712 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T539 | 740-744 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T540 | 887-892 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1181 | 76-77 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1182 | 98-99 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1183 | 643-648 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1184 | 740-744 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1185 | 887-892 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T53634 | 494-505 | Chemical | denotes | application | http://purl.obolibrary.org/obo/CHEBI_33232 |
| T52481 | 709-712 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T405 | 0-45 | Sentence | denotes | Mass cytometry processing and quality control |
| T406 | 46-269 | Sentence | denotes | CyTOF data were acquired with a CyTOF2 system using a SuperSampler fluidics system (Victorian Airships) at an event rate of < 400 events per second and normalized with Helios normalizer software (Fluidigm version 6.7.1016). |
| T407 | 270-403 | Sentence | denotes | Acquisitions from different days (three independent acquisitions were performed) were normalized using five-element beads (Fluidigm). |
| T408 | 404-506 | Sentence | denotes | Barcoded samples were deconvoluted and cross-sample doublets were filtered using cytobank application. |
| T409 | 507-792 | Sentence | denotes | CyTOF data was pre-processed with Cytobank (https://mtsinai.cytobank.org; Cytobank, 7.0) to sequentially remove calibration beads, dead cells, debris and barcodes for CD45+ PBMCs based on event length, DNA (191Ir and 193Ir) and live cell (195Pt) channels and then export the FCS files. |
| T410 | 793-904 | Sentence | denotes | We analyzed 200,000 PBMCs in cohort-1 and 160,000 PBMC in cohort-2, with an average of 20,000 cells per sample. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1496 | 674-678 | Gene | denotes | CD45 | Gene:5788 |
| 1497 | 214-220 | Gene | denotes | Helios | Gene:22807 |