> top > docs > PMC:7417788 > spans > 72390-73294 > annotations

PMC:7417788 / 72390-73294 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1506 674-678 PR:000001006 denotes CD45

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T537 643-648 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T538 709-712 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T539 740-744 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T540 887-892 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1181 76-77 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1182 98-99 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1183 643-648 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1184 740-744 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1185 887-892 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53634 494-505 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T52481 709-712 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T405 0-45 Sentence denotes Mass cytometry processing and quality control
T406 46-269 Sentence denotes CyTOF data were acquired with a CyTOF2 system using a SuperSampler fluidics system (Victorian Airships) at an event rate of < 400 events per second and normalized with Helios normalizer software (Fluidigm version 6.7.1016).
T407 270-403 Sentence denotes Acquisitions from different days (three independent acquisitions were performed) were normalized using five-element beads (Fluidigm).
T408 404-506 Sentence denotes Barcoded samples were deconvoluted and cross-sample doublets were filtered using cytobank application.
T409 507-792 Sentence denotes CyTOF data was pre-processed with Cytobank (https://mtsinai.cytobank.org; Cytobank, 7.0) to sequentially remove calibration beads, dead cells, debris and barcodes for CD45+ PBMCs based on event length, DNA (191Ir and 193Ir) and live cell (195Pt) channels and then export the FCS files.
T410 793-904 Sentence denotes We analyzed 200,000 PBMCs in cohort-1 and 160,000 PBMC in cohort-2, with an average of 20,000 cells per sample.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1496 674-678 Gene denotes CD45 Gene:5788
1497 214-220 Gene denotes Helios Gene:22807