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PMC:7417788 / 70845-72388 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1495 55-65 GO:0010467 denotes expression
T1496 69-75 UBERON:0002405 denotes immune
T1497 232-242 GO:0010467 denotes expressing
T1498 270-280 GO:0010467 denotes expressing
T1499 356-366 GO:0010467 denotes expression
T1500 896-906 GO:0010467 denotes expressing
T1501 935-945 GO:0010467 denotes expressing
T1502 989-999 GO:0010467 denotes expression
T1503 1054-1064 GO:0010467 denotes expression
T1504 1189-1193 SO:0000704 denotes gene
T1505 1443-1453 GO:0010467 denotes expression

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T510 17-21 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T511 22-26 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T512 120-124 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T513 125-129 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T514 243-248 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T515 281-286 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T516 421-425 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T517 907-919 Body_part denotes cells in set http://purl.org/sig/ont/fma/fma71954
T518 907-912 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T519 946-958 Body_part denotes cells in set http://purl.org/sig/ont/fma/fma71954
T520 946-951 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T521 1003-1007 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T522 1013-1021 Body_part denotes cell set http://purl.org/sig/ont/fma/fma71954
T523 1013-1017 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T524 1068-1072 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T525 1078-1086 Body_part denotes cell set http://purl.org/sig/ont/fma/fma71954
T526 1078-1082 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T527 1119-1131 Body_part denotes cells in set http://purl.org/sig/ont/fma/fma71954
T528 1119-1124 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T529 1164-1176 Body_part denotes cells in set http://purl.org/sig/ont/fma/fma71954
T530 1164-1169 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T531 1189-1193 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T532 1295-1305 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T533 1310-1319 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T534 1359-1363 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T535 1482-1486 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T536 1533-1537 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1160 17-21 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1161 22-26 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1162 120-124 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1163 125-129 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1164 243-248 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1165 281-286 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1166 421-425 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1167 767-772 http://purl.obolibrary.org/obo/CLO_0007029 denotes j}^{m
T1168 767-772 http://purl.obolibrary.org/obo/CLO_0050993 denotes j}^{m
T1169 907-912 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1170 946-951 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1171 1003-1007 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1172 1013-1017 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1173 1068-1072 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1174 1078-1082 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1175 1119-1124 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1176 1164-1169 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1177 1189-1193 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T1178 1359-1369 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T1179 1482-1491 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T1180 1533-1542 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4789 84-91 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T88562 175-181 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T154 263-269 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T28709 349-355 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T14279 928-934 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T157 982-988 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T73358 1239-1246 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T54318 1400-1406 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T160 1468-1474 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T399 0-38 Sentence denotes Determination of cell-cell interaction
T400 39-161 Sentence denotes We employed the expression of immune-related ligands and receptors to assess the cell-cell interactions (Ma et al., 2020).
T401 162-432 Sentence denotes The possible ligand-receptor interactions between one set of receptor-expressing cells and then next ligand-expressing cells were determined as the average of the product of receptor and ligand expression (respectively from set one and two) across all single-cell pairs:
T402 433-1181 Sentence denotes \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$I = \mathop \sum \limits_{i}^{n} I_{i} \times \mathop \sum \limits_{j}^{m} r_{j} \left(\frac{1}{m*n}\right)$$\end{document}I=∑inIi×∑jmrj1m∗nwhere I refers to the interaction score between receptor expressing cells in set one and ligand-expressing cells in set two, Ii stands for the ligand expression of cell i in cell set one, rj represents the receptor expression of cell j in cell set two, n stands for the number of cells in set one and m denotes the number of cells in set two.
T403 1182-1320 Sentence denotes In the gene list, there were 168 pairs of well-annotated ligands and receptors, among which were co-stimulators, chemokines and cytokines.
T404 1321-1543 Sentence denotes The possible interactions between two cell types were orchestrated by receptor-ligand pairs by the product of the average expression levels of the ligand in one cell type and the respective receptor in the other cell type.

2_test

Id Subject Object Predicate Lexical cue
32780218-29706550-132718732 155-159 29706550 denotes 2020