PMC:7417788 / 70145-70843
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1488 | 124-132 | CHEBI:28073;CHEBI:28073 | denotes | Chromium |
| T1489 | 211-212 | CL:0000236 | denotes | T |
| T1490 | 213-219 | CL:0000236 | denotes | B cell |
| T1491 | 312-316 | PR:000003906 | denotes | CDR3 |
| T1492 | 353-357 | SO:0000704 | denotes | gene |
| T1493 | 593-594 | CL:0000084 | denotes | T |
| T1494 | 596-603 | CL:0000236 | denotes | B cells |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T506 | 140-144 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T507 | 215-219 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T508 | 353-357 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T509 | 598-603 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T140 | 644-647 | Disease | denotes | SNE | http://purl.obolibrary.org/obo/MONDO_0018859 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1153 | 122-123 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1154 | 140-144 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T1155 | 213-219 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
| T1156 | 353-357 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T1157 | 503-504 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1158 | 596-603 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T1159 | 640-641 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T151 | 124-132 | Chemical | denotes | Chromium | http://purl.obolibrary.org/obo/CHEBI_28073 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T394 | 0-180 | Sentence | denotes | PCR amplification was done to enrich the full-length TCR/BCR V(D)J segments for the amplified cDNA from 5′ libraries with a Chromium Single-Cell V(D)J Enrichment kit (10 Genomics). |
| T395 | 181-358 | Sentence | denotes | The TCR/BCR sequences of each T/B cell were clustered using the CellRanger vdj pipeline (version 3.1.0, allowing identification of CDR3 sequence and the rearranged TCR/BCR gene. |
| T396 | 359-470 | Sentence | denotes | Analysis was performed using Loupe V(D)J Browser version 2.0.1 (https://support.10xgenomics.com, 10x Genomics). |
| T397 | 471-579 | Sentence | denotes | In summary, barcode information a containing clonotype frequency and TCR/BCR diversity metric were obtained. |
| T398 | 580-698 | Sentence | denotes | We projected T /B cells with dominant TCR/BCR clonotypes on a t-SNE plot using barcode information (Wen et al., 2020). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32780218-29891535-132718731 | 692-696 | 29891535 | denotes | 2020 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1483 | 53-56 | Gene | denotes | TCR | Gene:6962 |
| 1484 | 57-60 | Gene | denotes | BCR | Gene:613 |
| 1485 | 185-188 | Gene | denotes | TCR | Gene:6962 |
| 1486 | 189-192 | Gene | denotes | BCR | Gene:613 |
| 1487 | 345-348 | Gene | denotes | TCR | Gene:6962 |
| 1488 | 349-352 | Gene | denotes | BCR | Gene:613 |
| 1489 | 540-543 | Gene | denotes | TCR | Gene:6962 |
| 1490 | 544-547 | Gene | denotes | BCR | Gene:613 |
| 1491 | 618-621 | Gene | denotes | TCR | Gene:6962 |
| 1492 | 622-625 | Gene | denotes | BCR | Gene:613 |
| 1493 | 162-165 | Gene | denotes | kit | Gene:3815 |