PMC:7417788 / 67017-67263 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7417788","sourcedb":"PMC","sourceid":"7417788","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7417788","text":"To analyze the scRNA-seq data, we log normalized data (1 + counts per 10,000) with the ‘‘sc.pp.normalize_total’’ function before clustering, reduction and performing 2-dimensional t-SNE algorithm clustering with the first 50 principal components.","tracks":[{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T1445","span":{"begin":15,"end":20},"obj":"SO:0002031"}],"attributes":[{"subj":"T1445","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T139","span":{"begin":182,"end":185},"obj":"Disease"}],"attributes":[{"id":"A139","pred":"mondo_id","subj":"T139","obj":"http://purl.obolibrary.org/obo/MONDO_0018859"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T373","span":{"begin":0,"end":246},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T373","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PMC-OGER-BB","color":"#9493ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#abec93"},{"id":"LitCovid-sentences","color":"#ec93c5"}]}]}}