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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7417788","sourcedb":"PMC","sourceid":"7417788","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7417788","text":"To generate a comprehensive immune cell atlas reflecting cellular and systemic adaptations resulting from age and/or COVID-19 infection, we integrated scRNA-seq, CyTOF, scATAC-seq and scTCR/BCR-seq of single-cell PBMC suspensions collected from 3 separate cohorts (Fig. 1A, 1B, and Table S1A–G).","tracks":[{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T137","span":{"begin":28,"end":34},"obj":"UBERON:0002405;CL:0000738"},{"id":"T138","span":{"begin":35,"end":39},"obj":"CL:0000738"},{"id":"T139","span":{"begin":117,"end":125},"obj":"SP_7"},{"id":"T65156","span":{"begin":28,"end":34},"obj":"UBERON:0002405;CL:0000738"},{"id":"T76705","span":{"begin":35,"end":39},"obj":"CL:0000738"},{"id":"T48224","span":{"begin":117,"end":125},"obj":"SP_7"}],"attributes":[{"subj":"T137","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T138","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T139","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T65156","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T76705","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T48224","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T71","span":{"begin":35,"end":39},"obj":"Body_part"},{"id":"T72","span":{"begin":208,"end":212},"obj":"Body_part"}],"attributes":[{"id":"A71","pred":"fma_id","subj":"T71","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A72","pred":"fma_id","subj":"T72","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T71","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T72","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T20","span":{"begin":117,"end":125},"obj":"Disease"},{"id":"T21","span":{"begin":126,"end":135},"obj":"Disease"}],"attributes":[{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T107","span":{"begin":12,"end":13},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T108","span":{"begin":35,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T109","span":{"begin":208,"end":212},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T107","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T108","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T35","span":{"begin":0,"end":295},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T35","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"105","span":{"begin":190,"end":193},"obj":"Gene"},{"id":"114","span":{"begin":117,"end":125},"obj":"Disease"},{"id":"115","span":{"begin":126,"end":135},"obj":"Disease"}],"attributes":[{"id":"A105","pred":"tao:has_database_id","subj":"105","obj":"Gene:613"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"MESH:C000657245"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"MESH:D007239"},{"subj":"105","pred":"source","obj":"LitCovid-PubTator"},{"subj":"114","pred":"source","obj":"LitCovid-PubTator"},{"subj":"115","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PMC-OGER-BB","color":"#93ecab","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec9394"},{"id":"LitCovid-PD-MONDO","color":"#93aeec"},{"id":"LitCovid-PD-CLO","color":"#c8ec93"},{"id":"LitCovid-sentences","color":"#ec93e2"},{"id":"LitCovid-PubTator","color":"#93ecdc"}]}]}}