PMC:7417788 / 18174-18439 JSONTXT

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T424","span":{"begin":35,"end":40},"obj":"SO:0000704"},{"id":"T425","span":{"begin":47,"end":57},"obj":"GO:0010467"},{"id":"T426","span":{"begin":88,"end":94},"obj":"UBERON:0002405;CL:0000738"},{"id":"T427","span":{"begin":95,"end":100},"obj":"CL:0000738"},{"id":"T428","span":{"begin":124,"end":133},"obj":"MOP:0000568"},{"id":"T429","span":{"begin":148,"end":153},"obj":"PR:000006348"},{"id":"T430","span":{"begin":155,"end":160},"obj":"PR:000002313"},{"id":"T431","span":{"begin":201,"end":206},"obj":"PR:000006746"},{"id":"T432","span":{"begin":208,"end":215},"obj":"PR:000014403"},{"id":"T433","span":{"begin":217,"end":222},"obj":"PR:000005779"},{"id":"T434","span":{"begin":224,"end":229},"obj":"PR:000013374"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T187","span":{"begin":95,"end":100},"obj":"Body_part"},{"id":"T188","span":{"begin":238,"end":242},"obj":"Body_part"}],"attributes":[{"id":"A187","pred":"fma_id","subj":"T187","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A188","pred":"fma_id","subj":"T188","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T381","span":{"begin":23,"end":24},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T382","span":{"begin":35,"end":40},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T383","span":{"begin":95,"end":100},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T384","span":{"begin":238,"end":242},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T87","span":{"begin":0,"end":265},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T5","span":{"begin":124,"end":140},"obj":"Phenotype"}],"attributes":[{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0025464"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"447","span":{"begin":148,"end":153},"obj":"Gene"},{"id":"448","span":{"begin":155,"end":160},"obj":"Gene"},{"id":"449","span":{"begin":162,"end":166},"obj":"Gene"},{"id":"450","span":{"begin":201,"end":206},"obj":"Gene"},{"id":"451","span":{"begin":208,"end":215},"obj":"Gene"},{"id":"452","span":{"begin":217,"end":222},"obj":"Gene"},{"id":"453","span":{"begin":224,"end":229},"obj":"Gene"},{"id":"461","span":{"begin":134,"end":140},"obj":"Disease"}],"attributes":[{"id":"A447","pred":"tao:has_database_id","subj":"447","obj":"Gene:54541"},{"id":"A448","pred":"tao:has_database_id","subj":"448","obj":"Gene:837"},{"id":"A449","pred":"tao:has_database_id","subj":"449","obj":"Gene:706"},{"id":"A450","pred":"tao:has_database_id","subj":"450","obj":"Gene:1844"},{"id":"A451","pred":"tao:has_database_id","subj":"451","obj":"Gene:6281"},{"id":"A452","pred":"tao:has_database_id","subj":"452","obj":"Gene:9377"},{"id":"A453","pred":"tao:has_database_id","subj":"453","obj":"Gene:5694"},{"id":"A461","pred":"tao:has_database_id","subj":"461","obj":"MESH:D000079225"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Specifically, we found a set of 60 genes whose expression was increased in all kinds of immune cells, indicative of general oxidative stress (e.g., DDIT4, CASP4, TSPO) and an inflammatory state (e.g., DUSP2, S100A10, COX5A, PSMB6) across cell populations (Fig. 3A)."}